Strain Fitness in Pseudomonas sp. DMC3 around GFF3171

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3169 and GFF3170 are separated by 54 nucleotidesGFF3170 and GFF3171 are separated by 54 nucleotidesGFF3171 and GFF3172 overlap by 6 nucleotidesGFF3172 and GFF3173 are separated by 111 nucleotides GFF3169 - hypothetical protein, at 130,759 to 131,715 GFF3169 GFF3170 - hypothetical protein, at 131,770 to 132,531 GFF3170 GFF3171 - D-inositol-3-phosphate glycosyltransferase, at 132,586 to 133,680 GFF3171 GFF3172 - hypothetical protein, at 133,675 to 134,280 GFF3172 GFF3173 - hypothetical protein, at 134,392 to 135,564 GFF3173 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 131.725 kb on + strandat 131.726 kb on - strandat 131.726 kb on - strandat 131.728 kb on - strandat 131.766 kb on - strandat 131.796 kb on + strandat 131.796 kb on + strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.797 kb on - strandat 131.808 kb on + strandat 131.850 kb on + strand, within GFF3170at 131.850 kb on + strand, within GFF3170at 131.864 kb on - strand, within GFF3170at 132.034 kb on + strand, within GFF3170at 132.034 kb on + strand, within GFF3170at 132.034 kb on + strand, within GFF3170at 132.034 kb on + strand, within GFF3170at 132.034 kb on + strand, within GFF3170at 132.034 kb on + strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.035 kb on - strand, within GFF3170at 132.036 kb on + strand, within GFF3170at 132.036 kb on + strand, within GFF3170at 132.036 kb on + strand, within GFF3170at 132.037 kb on - strand, within GFF3170at 132.068 kb on - strand, within GFF3170at 132.145 kb on + strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.146 kb on - strand, within GFF3170at 132.147 kb on + strand, within GFF3170at 132.147 kb on + strand, within GFF3170at 132.147 kb on + strand, within GFF3170at 132.147 kb on + strand, within GFF3170at 132.148 kb on - strand, within GFF3170at 132.148 kb on - strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.175 kb on + strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.176 kb on - strand, within GFF3170at 132.220 kb on + strand, within GFF3170at 132.377 kb on + strand, within GFF3170at 132.378 kb on - strand, within GFF3170at 132.431 kb on - strand, within GFF3170at 132.586 kb on - strandat 132.592 kb on - strandat 132.600 kb on + strandat 132.601 kb on - strandat 132.601 kb on - strandat 132.640 kb on - strandat 132.640 kb on - strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.657 kb on - strandat 132.657 kb on - strandat 132.657 kb on - strandat 132.657 kb on - strandat 132.657 kb on - strandat 132.933 kb on - strand, within GFF3171at 133.175 kb on + strand, within GFF3171at 133.385 kb on - strand, within GFF3171at 133.613 kb on - strandat 133.743 kb on + strand, within GFF3172at 133.745 kb on + strand, within GFF3172at 133.745 kb on + strand, within GFF3172at 133.745 kb on + strand, within GFF3172at 133.745 kb on + strand, within GFF3172at 133.886 kb on + strand, within GFF3172at 133.886 kb on + strand, within GFF3172at 133.886 kb on + strand, within GFF3172at 133.886 kb on + strand, within GFF3172at 133.887 kb on - strand, within GFF3172at 133.887 kb on - strand, within GFF3172at 134.003 kb on + strand, within GFF3172at 134.004 kb on - strand, within GFF3172at 134.004 kb on - strand, within GFF3172at 134.004 kb on - strand, within GFF3172at 134.004 kb on - strand, within GFF3172at 134.283 kb on + strandat 134.283 kb on + strandat 134.283 kb on + strandat 134.314 kb on + strandat 134.314 kb on + strandat 134.314 kb on + strandat 134.314 kb on + strandat 134.315 kb on - strandat 134.315 kb on - strandat 134.315 kb on - strandat 134.315 kb on - strandat 134.417 kb on + strandat 134.417 kb on + strandat 134.418 kb on - strandat 134.418 kb on - strandat 134.418 kb on - strandat 134.418 kb on - strandat 134.418 kb on - strandat 134.447 kb on + strandat 134.566 kb on + strand, within GFF3173at 134.567 kb on - strand, within GFF3173at 134.585 kb on - strand, within GFF3173at 134.585 kb on - strand, within GFF3173at 134.677 kb on + strand, within GFF3173at 134.677 kb on + strand, within GFF3173at 134.678 kb on - strand, within GFF3173at 134.678 kb on - strand, within GFF3173at 134.678 kb on - strand, within GFF3173

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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131,725 + +1.2
131,726 - -1.2
131,726 - -0.4
131,728 - -2.6
131,766 - -0.4
131,796 + -0.7
131,796 + -1.3
131,797 - -0.9
131,797 - +0.0
131,797 - -0.6
131,797 - +0.7
131,797 - -2.5
131,797 - -0.4
131,797 - +0.2
131,797 - -1.4
131,808 + -0.6
131,850 + GFF3170 0.10 +0.1
131,850 + GFF3170 0.10 -0.9
131,864 - GFF3170 0.12 +0.0
132,034 + GFF3170 0.35 +0.0
132,034 + GFF3170 0.35 -0.4
132,034 + GFF3170 0.35 -0.9
132,034 + GFF3170 0.35 -1.0
132,034 + GFF3170 0.35 -0.5
132,034 + GFF3170 0.35 +0.4
132,035 - GFF3170 0.35 -2.1
132,035 - GFF3170 0.35 -0.6
132,035 - GFF3170 0.35 +1.0
132,035 - GFF3170 0.35 +0.1
132,035 - GFF3170 0.35 -0.3
132,035 - GFF3170 0.35 -0.6
132,035 - GFF3170 0.35 -0.9
132,035 - GFF3170 0.35 +1.1
132,035 - GFF3170 0.35 +0.8
132,035 - GFF3170 0.35 -0.9
132,035 - GFF3170 0.35 +0.3
132,035 - GFF3170 0.35 -0.6
132,036 + GFF3170 0.35 +0.4
132,036 + GFF3170 0.35 -0.0
132,036 + GFF3170 0.35 -1.1
132,037 - GFF3170 0.35 -0.2
132,068 - GFF3170 0.39 -1.1
132,145 + GFF3170 0.49 -0.3
132,146 - GFF3170 0.49 -0.5
132,146 - GFF3170 0.49 +1.7
132,146 - GFF3170 0.49 -0.3
132,146 - GFF3170 0.49 -0.1
132,146 - GFF3170 0.49 +0.8
132,146 - GFF3170 0.49 +0.1
132,146 - GFF3170 0.49 -0.3
132,147 + GFF3170 0.49 -1.4
132,147 + GFF3170 0.49 +0.3
132,147 + GFF3170 0.49 -1.3
132,147 + GFF3170 0.49 +0.4
132,148 - GFF3170 0.50 -0.9
132,148 - GFF3170 0.50 +0.5
132,175 + GFF3170 0.53 +0.2
132,175 + GFF3170 0.53 +0.3
132,175 + GFF3170 0.53 +0.7
132,175 + GFF3170 0.53 +0.3
132,175 + GFF3170 0.53 +1.4
132,175 + GFF3170 0.53 -1.0
132,175 + GFF3170 0.53 -0.5
132,175 + GFF3170 0.53 -0.2
132,175 + GFF3170 0.53 +0.3
132,176 - GFF3170 0.53 +0.0
132,176 - GFF3170 0.53 +0.1
132,176 - GFF3170 0.53 -0.5
132,176 - GFF3170 0.53 -0.1
132,176 - GFF3170 0.53 -0.5
132,176 - GFF3170 0.53 +0.3
132,176 - GFF3170 0.53 +0.6
132,176 - GFF3170 0.53 +1.0
132,176 - GFF3170 0.53 -0.6
132,176 - GFF3170 0.53 -1.1
132,176 - GFF3170 0.53 -0.7
132,220 + GFF3170 0.59 -0.0
132,377 + GFF3170 0.80 +0.8
132,378 - GFF3170 0.80 +0.0
132,431 - GFF3170 0.87 -0.6
132,586 - -1.5
132,592 - -0.1
132,600 + -0.1
132,601 - -2.5
132,601 - -0.9
132,640 - -0.9
132,640 - -1.0
132,656 + +0.1
132,656 + +0.7
132,656 + -0.2
132,657 - -0.8
132,657 - -1.0
132,657 - -0.3
132,657 - -1.2
132,657 - -2.6
132,933 - GFF3171 0.32 -1.4
133,175 + GFF3171 0.54 -0.3
133,385 - GFF3171 0.73 +0.0
133,613 - -0.8
133,743 + GFF3172 0.11 -0.2
133,745 + GFF3172 0.12 +0.1
133,745 + GFF3172 0.12 +2.1
133,745 + GFF3172 0.12 -1.3
133,745 + GFF3172 0.12 -0.6
133,886 + GFF3172 0.35 -0.2
133,886 + GFF3172 0.35 +0.7
133,886 + GFF3172 0.35 +0.8
133,886 + GFF3172 0.35 -0.4
133,887 - GFF3172 0.35 +0.4
133,887 - GFF3172 0.35 +0.3
134,003 + GFF3172 0.54 +0.5
134,004 - GFF3172 0.54 -0.1
134,004 - GFF3172 0.54 -0.6
134,004 - GFF3172 0.54 +1.0
134,004 - GFF3172 0.54 -0.3
134,283 + -1.3
134,283 + +0.5
134,283 + +0.7
134,314 + +0.1
134,314 + -1.4
134,314 + -0.7
134,314 + +0.1
134,315 - +0.1
134,315 - +0.1
134,315 - +0.1
134,315 - +0.3
134,417 + +0.7
134,417 + -0.2
134,418 - +0.8
134,418 - -2.1
134,418 - -0.0
134,418 - +1.0
134,418 - +0.6
134,447 + +0.5
134,566 + GFF3173 0.15 -1.1
134,567 - GFF3173 0.15 +0.1
134,585 - GFF3173 0.16 +0.0
134,585 - GFF3173 0.16 -0.2
134,677 + GFF3173 0.24 +1.3
134,677 + GFF3173 0.24 -0.7
134,678 - GFF3173 0.24 +0.0
134,678 - GFF3173 0.24 -0.5
134,678 - GFF3173 0.24 +0.0

Or see this region's nucleotide sequence