Strain Fitness in Pseudomonas sp. DMC3 around GFF3102

Experiment: D-Glucose and D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and D,L-Lactate (C)
46,085	+		GFF3101	0.83	+1.7
46,086	-		GFF3101	0.83	-0.4
46,109	+		GFF3101	0.84	+0.1
46,109	+		GFF3101	0.84	-0.5
46,109	+		GFF3101	0.84	+1.0
46,109	+		GFF3101	0.84	+1.7
46,109	+		GFF3101	0.84	+0.3
46,109	+		GFF3101	0.84	+0.7
46,109	+		GFF3101	0.84	+1.2
46,109	+		GFF3101	0.84	-0.2
46,110	-		GFF3101	0.84	-0.0
46,110	-		GFF3101	0.84	+0.8
46,110	-		GFF3101	0.84	+0.8
46,110	-		GFF3101	0.84	+0.1
46,110	-		GFF3101	0.84	+0.7
46,110	-		GFF3101	0.84	+1.7
46,110	-		GFF3101	0.84	+2.0
46,187	+		GFF3101	0.89	+0.2
46,187	+		GFF3101	0.89	-0.3
46,187	+		GFF3101	0.89	-0.4
46,187	+		GFF3101	0.89	+0.0
46,188	-		GFF3101	0.89	+0.4
46,220	+				-0.2
46,221	-				+0.2
46,233	-				+0.1
46,464	+				+0.0
46,464	+				+0.5
46,465	-				-0.0
46,597	+				+0.6
46,597	+				+0.4
46,597	+				+1.0
46,598	-				-0.6
46,598	-				-2.3
46,598	-				+0.2
46,598	-				-0.9
46,634	-				-2.8
46,727	+				-2.3
46,727	+				-3.1
46,727	+				-4.9
46,728	-				-3.4
46,728	-				-1.1
46,728	-				-2.5
46,750	+				-0.9
46,770	+				-3.5
46,770	+				-0.3
46,770	+				-1.5
46,771	-				-3.2
46,771	-				-2.4
46,771	-				-2.0
46,771	-				-1.8
46,778	-				-1.6
46,799	-				-0.9
46,952	-				-2.2
46,964	+				-1.8
46,964	+				-3.8
46,964	+				-1.9
46,965	-				-3.4
47,145	-				-3.9
47,145	-				-2.5
47,145	-				-2.5
47,243	+		GFF3102	0.12	-2.4
47,243	+		GFF3102	0.12	-2.9
47,244	-		GFF3102	0.12	-2.6
47,244	-		GFF3102	0.12	-0.9
47,276	+		GFF3102	0.13	-0.5
47,276	+		GFF3102	0.13	-3.0
47,276	+		GFF3102	0.13	-2.2
47,276	+		GFF3102	0.13	-2.2
47,276	+		GFF3102	0.13	-1.3
47,276	+		GFF3102	0.13	-2.5
47,276	+		GFF3102	0.13	-2.6
47,277	-		GFF3102	0.13	-3.3
47,277	-		GFF3102	0.13	-1.6
47,277	-		GFF3102	0.13	-1.5
47,277	-		GFF3102	0.13	-2.4
47,277	-		GFF3102	0.13	-2.9
47,277	-		GFF3102	0.13	-1.3
47,277	-		GFF3102	0.13	-3.0
47,277	-		GFF3102	0.13	-2.8
47,279	-		GFF3102	0.13	-1.8
47,279	-		GFF3102	0.13	-1.9
47,684	+		GFF3102	0.22	-3.6
47,684	+		GFF3102	0.22	-3.5
47,685	-		GFF3102	0.22	-1.8
47,685	-		GFF3102	0.22	-1.6
47,687	-		GFF3102	0.22	-2.5
47,690	+		GFF3102	0.22	-3.4
47,691	-		GFF3102	0.22	-3.3
47,691	-		GFF3102	0.22	-0.9
47,691	-		GFF3102	0.22	-0.8
47,704	+		GFF3102	0.22	-2.8
47,705	-		GFF3102	0.22	-3.2
47,776	+		GFF3102	0.24	-2.2
47,855	+		GFF3102	0.26	-1.7
47,856	-		GFF3102	0.26	-1.9
47,981	+		GFF3102	0.29	-1.2
47,982	-		GFF3102	0.29	-2.8
47,982	-		GFF3102	0.29	-3.0
48,080	+		GFF3102	0.31	-3.6
48,081	-		GFF3102	0.31	-2.4
48,081	-		GFF3102	0.31	-1.9
48,081	-		GFF3102	0.31	-1.8
48,092	+		GFF3102	0.31	-3.6
48,092	+		GFF3102	0.31	-3.8
48,093	-		GFF3102	0.31	-3.8
48,093	-		GFF3102	0.31	-3.2
48,093	-		GFF3102	0.31	-0.9
48,207	+		GFF3102	0.34	-2.5
48,207	+		GFF3102	0.34	-0.6
48,207	+		GFF3102	0.34	-1.5
48,218	+		GFF3102	0.34	-2.0
48,455	+		GFF3102	0.39	-1.8
48,455	+		GFF3102	0.39	-1.8
48,456	-		GFF3102	0.39	-2.1
48,560	-		GFF3102	0.42	-3.6
48,728	+		GFF3102	0.45	-0.6
48,728	+		GFF3102	0.45	-4.0
48,743	+		GFF3102	0.46	-3.0
48,744	-		GFF3102	0.46	-2.3
48,750	+		GFF3102	0.46	-1.1
48,750	+		GFF3102	0.46	-3.6
48,750	+		GFF3102	0.46	-2.1
48,751	-		GFF3102	0.46	-3.8
48,794	+		GFF3102	0.47	-2.8
48,795	-		GFF3102	0.47	-0.9
48,862	+		GFF3102	0.48	-2.5
48,863	-		GFF3102	0.48	-0.6
48,863	-		GFF3102	0.48	-2.5
49,092	-		GFF3102	0.54	-1.1
49,160	+		GFF3102	0.55	-2.3
49,160	+		GFF3102	0.55	-2.2
49,161	-		GFF3102	0.55	-1.5
49,161	-		GFF3102	0.55	-3.2
49,161	-		GFF3102	0.55	-2.1
49,294	+		GFF3102	0.58	-3.3
49,458	+		GFF3102	0.62	-2.2
49,458	+		GFF3102	0.62	-1.1
49,470	-		GFF3102	0.62	-2.5
49,627	+		GFF3102	0.66	-2.0
49,627	+		GFF3102	0.66	-2.5
49,628	-		GFF3102	0.66	-2.5
49,628	-		GFF3102	0.66	-3.8
49,631	+		GFF3102	0.66	-2.4
49,631	+		GFF3102	0.66	-0.9
49,632	-		GFF3102	0.66	-0.9
49,632	-		GFF3102	0.66	-2.8
49,632	-		GFF3102	0.66	-1.9
49,710	+		GFF3102	0.67	-0.5
49,711	-		GFF3102	0.67	-3.2
49,757	+		GFF3102	0.68	-0.3
49,757	+		GFF3102	0.68	-2.8
49,757	+		GFF3102	0.68	-3.0
49,758	-		GFF3102	0.69	-1.1
49,758	-		GFF3102	0.69	-3.3
49,826	+		GFF3102	0.70	-1.8
49,826	+		GFF3102	0.70	-3.4
49,827	-		GFF3102	0.70	-2.4
49,827	-		GFF3102	0.70	-3.4
50,018	+		GFF3102	0.74	-3.2
50,093	+		GFF3102	0.76	-3.3
50,093	+		GFF3102	0.76	-3.5
50,094	-		GFF3102	0.76	-1.5
50,094	-		GFF3102	0.76	-0.3
50,094	-		GFF3102	0.76	-0.5
50,132	+		GFF3102	0.77	-1.5
50,132	+		GFF3102	0.77	-3.3
50,132	+		GFF3102	0.77	-1.9
50,132	+		GFF3102	0.77	-3.6
50,132	+		GFF3102	0.77	-1.1
50,133	-		GFF3102	0.77	-2.6
50,133	-		GFF3102	0.77	-3.5
50,420	-		GFF3102	0.83	-0.6
50,576	+		GFF3102	0.87	-2.4
50,576	+		GFF3102	0.87	-2.6
50,576	+		GFF3102	0.87	-2.9
50,577	-		GFF3102	0.87	-1.6
50,577	-		GFF3102	0.87	-1.3
50,577	-		GFF3102	0.87	-2.9
50,577	-		GFF3102	0.87	-5.0
50,601	-		GFF3102	0.87	-4.2
50,662	+		GFF3102	0.89	-2.4
50,663	-		GFF3102	0.89	-0.6
50,702	+		GFF3102	0.90	-1.6
50,764	+				-2.2
50,765	-				-2.2
50,816	+				-1.6
50,817	-				-1.6
50,817	-				-1.8
50,817	-				-3.2
50,894	+				-1.2
50,895	-				-2.4
51,075	-				-1.6
51,075	-				-4.1
51,159	-				-3.3
51,186	+				-4.2
51,186	+				-4.7
51,187	-				-0.6
51,187	-				-1.1
51,187	-				-3.7
51,572	+		GFF3103	0.27	-2.5
51,573	-		GFF3103	0.27	-1.1
51,573	-		GFF3103	0.27	-1.1
51,894	-		GFF3103	0.50	-3.9
51,894	-		GFF3103	0.50	-2.9
51,929	+		GFF3103	0.52	-2.8
51,929	+		GFF3103	0.52	-3.2
51,930	-		GFF3103	0.52	-3.0
51,930	-		GFF3103	0.52	-2.8
51,930	-		GFF3103	0.52	-2.8
51,930	-		GFF3103	0.52	-2.5
51,971	+		GFF3103	0.55	-2.1
51,971	+		GFF3103	0.55	-4.3
51,972	-		GFF3103	0.55	-3.5