Strain Fitness in Pseudomonas sp. DMC3 around GFF3092

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3091 and GFF3092 are separated by 184 nucleotidesGFF3092 and GFF3093 are separated by 334 nucleotides GFF3091 - hypothetical protein, at 32,860 to 33,672 GFF3091 GFF3092 - NADP-dependent malic enzyme, at 33,857 to 35,125 GFF3092 GFF3093 - Penicillin-binding protein 1A, at 35,460 to 37,907 GFF3093 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -2 -1 0 1at 33.064 kb on - strand, within GFF3091at 33.197 kb on - strand, within GFF3091at 33.220 kb on + strand, within GFF3091at 33.220 kb on + strand, within GFF3091at 33.220 kb on + strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.221 kb on - strand, within GFF3091at 33.416 kb on + strand, within GFF3091at 33.488 kb on + strand, within GFF3091at 33.489 kb on - strand, within GFF3091at 33.489 kb on - strand, within GFF3091at 33.663 kb on - strandat 33.751 kb on - strandat 33.944 kb on - strandat 33.982 kb on - strandat 34.031 kb on + strand, within GFF3092at 34.031 kb on + strand, within GFF3092at 34.031 kb on + strand, within GFF3092at 34.032 kb on - strand, within GFF3092at 34.032 kb on - strand, within GFF3092at 34.032 kb on - strand, within GFF3092at 34.032 kb on - strand, within GFF3092at 34.032 kb on - strand, within GFF3092at 34.170 kb on + strand, within GFF3092at 34.170 kb on + strand, within GFF3092at 34.170 kb on + strand, within GFF3092at 34.170 kb on + strand, within GFF3092at 34.171 kb on - strand, within GFF3092at 34.233 kb on - strand, within GFF3092at 34.556 kb on + strand, within GFF3092at 34.556 kb on + strand, within GFF3092at 34.556 kb on + strand, within GFF3092at 34.623 kb on + strand, within GFF3092at 34.624 kb on - strand, within GFF3092at 34.624 kb on - strand, within GFF3092at 34.809 kb on + strand, within GFF3092at 34.809 kb on + strand, within GFF3092at 34.810 kb on - strand, within GFF3092at 34.810 kb on - strand, within GFF3092at 34.810 kb on - strand, within GFF3092at 34.935 kb on + strand, within GFF3092at 34.935 kb on + strand, within GFF3092at 34.935 kb on + strand, within GFF3092at 34.935 kb on + strand, within GFF3092at 34.935 kb on + strand, within GFF3092at 34.935 kb on + strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.936 kb on - strand, within GFF3092at 34.979 kb on + strand, within GFF3092at 34.980 kb on - strand, within GFF3092at 34.980 kb on - strand, within GFF3092at 34.980 kb on - strand, within GFF3092at 34.980 kb on - strand, within GFF3092at 34.980 kb on - strand, within GFF3092at 35.087 kb on + strandat 35.088 kb on - strandat 35.088 kb on - strandat 35.124 kb on - strandat 35.133 kb on + strandat 35.134 kb on - strandat 35.134 kb on - strandat 35.134 kb on - strandat 35.185 kb on + strandat 35.196 kb on + strandat 35.196 kb on + strandat 35.197 kb on - strandat 35.197 kb on - strandat 35.197 kb on - strandat 35.197 kb on - strandat 35.197 kb on - strandat 35.204 kb on - strandat 35.204 kb on - strandat 35.204 kb on - strandat 35.204 kb on - strandat 35.204 kb on - strandat 35.204 kb on - strandat 35.263 kb on - strandat 35.306 kb on - strandat 35.363 kb on + strandat 35.363 kb on + strandat 35.363 kb on + strandat 35.364 kb on - strandat 35.411 kb on - strandat 35.411 kb on - strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.695 kb on + strandat 35.696 kb on - strandat 35.696 kb on - strandat 35.696 kb on - strandat 35.696 kb on - strandat 35.696 kb on - strandat 35.696 kb on - strandat 35.775 kb on + strand, within GFF3093at 35.776 kb on - strand, within GFF3093at 35.788 kb on + strand, within GFF3093at 35.788 kb on + strand, within GFF3093at 35.789 kb on - strand, within GFF3093at 35.789 kb on - strand, within GFF3093at 35.789 kb on - strand, within GFF3093at 35.801 kb on - strand, within GFF3093at 35.854 kb on - strand, within GFF3093at 35.854 kb on - strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.932 kb on + strand, within GFF3093at 35.933 kb on - strand, within GFF3093at 35.933 kb on - strand, within GFF3093at 35.933 kb on - strand, within GFF3093at 35.933 kb on - strand, within GFF3093at 35.933 kb on - strand, within GFF3093at 35.933 kb on - strand, within GFF3093at 35.939 kb on + strand, within GFF3093at 35.939 kb on + strand, within GFF3093at 35.939 kb on + strand, within GFF3093at 35.939 kb on + strand, within GFF3093at 35.939 kb on + strand, within GFF3093at 35.939 kb on + strand, within GFF3093at 35.940 kb on - strand, within GFF3093at 35.940 kb on - strand, within GFF3093at 35.940 kb on - strand, within GFF3093at 35.940 kb on - strand, within GFF3093at 35.940 kb on - strand, within GFF3093at 35.940 kb on - strand, within GFF3093at 35.940 kb on - strand, within GFF3093

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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33,064 - GFF3091 0.25 -0.3
33,197 - GFF3091 0.41 -0.5
33,220 + GFF3091 0.44 -0.1
33,220 + GFF3091 0.44 +1.1
33,220 + GFF3091 0.44 +0.1
33,221 - GFF3091 0.44 +0.7
33,221 - GFF3091 0.44 -1.1
33,221 - GFF3091 0.44 -0.7
33,221 - GFF3091 0.44 +0.2
33,221 - GFF3091 0.44 +0.0
33,221 - GFF3091 0.44 -0.5
33,221 - GFF3091 0.44 -1.5
33,416 + GFF3091 0.68 -0.6
33,488 + GFF3091 0.77 -2.2
33,489 - GFF3091 0.77 +0.9
33,489 - GFF3091 0.77 -0.5
33,663 - -0.9
33,751 - +0.3
33,944 - -0.2
33,982 - -0.6
34,031 + GFF3092 0.14 -1.1
34,031 + GFF3092 0.14 -0.9
34,031 + GFF3092 0.14 -1.0
34,032 - GFF3092 0.14 -0.8
34,032 - GFF3092 0.14 -0.7
34,032 - GFF3092 0.14 -1.1
34,032 - GFF3092 0.14 -0.8
34,032 - GFF3092 0.14 -1.4
34,170 + GFF3092 0.25 -0.5
34,170 + GFF3092 0.25 -1.4
34,170 + GFF3092 0.25 -1.5
34,170 + GFF3092 0.25 -0.9
34,171 - GFF3092 0.25 +1.3
34,233 - GFF3092 0.30 -0.3
34,556 + GFF3092 0.55 +0.3
34,556 + GFF3092 0.55 +0.4
34,556 + GFF3092 0.55 -2.5
34,623 + GFF3092 0.60 -0.9
34,624 - GFF3092 0.60 -0.4
34,624 - GFF3092 0.60 -0.7
34,809 + GFF3092 0.75 -1.0
34,809 + GFF3092 0.75 -0.9
34,810 - GFF3092 0.75 -0.3
34,810 - GFF3092 0.75 -0.9
34,810 - GFF3092 0.75 -0.2
34,935 + GFF3092 0.85 +1.0
34,935 + GFF3092 0.85 -0.6
34,935 + GFF3092 0.85 -0.1
34,935 + GFF3092 0.85 +0.7
34,935 + GFF3092 0.85 -0.4
34,935 + GFF3092 0.85 -1.5
34,936 - GFF3092 0.85 -0.8
34,936 - GFF3092 0.85 -0.6
34,936 - GFF3092 0.85 -1.0
34,936 - GFF3092 0.85 -0.4
34,936 - GFF3092 0.85 -1.3
34,936 - GFF3092 0.85 -2.5
34,936 - GFF3092 0.85 -0.3
34,936 - GFF3092 0.85 -1.5
34,979 + GFF3092 0.88 +0.1
34,980 - GFF3092 0.88 -1.6
34,980 - GFF3092 0.88 -0.7
34,980 - GFF3092 0.88 -1.4
34,980 - GFF3092 0.88 -0.5
34,980 - GFF3092 0.88 -2.6
35,087 + +0.1
35,088 - -1.1
35,088 - -0.4
35,124 - -0.5
35,133 + +0.3
35,134 - +0.4
35,134 - -0.3
35,134 - +0.1
35,185 + +0.6
35,196 + +0.7
35,196 + -0.2
35,197 - -0.3
35,197 - +0.5
35,197 - -0.4
35,197 - -0.1
35,197 - -0.3
35,204 - -0.2
35,204 - +0.3
35,204 - -0.2
35,204 - +0.4
35,204 - -0.5
35,204 - -0.9
35,263 - -0.2
35,306 - -0.5
35,363 + -0.2
35,363 + -0.5
35,363 + +0.9
35,364 - -0.4
35,411 - -0.1
35,411 - -0.2
35,695 + +0.3
35,695 + -1.2
35,695 + -0.1
35,695 + +1.0
35,695 + +0.4
35,695 + +0.9
35,695 + -0.1
35,696 - +0.1
35,696 - -1.0
35,696 - +0.0
35,696 - -0.1
35,696 - +0.1
35,696 - +0.5
35,775 + GFF3093 0.13 -1.1
35,776 - GFF3093 0.13 +0.2
35,788 + GFF3093 0.13 -0.3
35,788 + GFF3093 0.13 +0.9
35,789 - GFF3093 0.13 +0.5
35,789 - GFF3093 0.13 -0.3
35,789 - GFF3093 0.13 -0.5
35,801 - GFF3093 0.14 -0.7
35,854 - GFF3093 0.16 +0.3
35,854 - GFF3093 0.16 +0.3
35,932 + GFF3093 0.19 +0.2
35,932 + GFF3093 0.19 +0.8
35,932 + GFF3093 0.19 -0.2
35,932 + GFF3093 0.19 +0.3
35,932 + GFF3093 0.19 -0.5
35,932 + GFF3093 0.19 +0.6
35,932 + GFF3093 0.19 -1.0
35,932 + GFF3093 0.19 -1.6
35,932 + GFF3093 0.19 -0.2
35,932 + GFF3093 0.19 -0.2
35,932 + GFF3093 0.19 +0.0
35,932 + GFF3093 0.19 +0.1
35,932 + GFF3093 0.19 +0.2
35,932 + GFF3093 0.19 -0.5
35,932 + GFF3093 0.19 +1.4
35,932 + GFF3093 0.19 -0.5
35,932 + GFF3093 0.19 -1.6
35,932 + GFF3093 0.19 -0.4
35,932 + GFF3093 0.19 -0.2
35,933 - GFF3093 0.19 +0.4
35,933 - GFF3093 0.19 -0.5
35,933 - GFF3093 0.19 -0.8
35,933 - GFF3093 0.19 +0.2
35,933 - GFF3093 0.19 -0.4
35,933 - GFF3093 0.19 +1.4
35,939 + GFF3093 0.20 +1.6
35,939 + GFF3093 0.20 +0.1
35,939 + GFF3093 0.20 -0.0
35,939 + GFF3093 0.20 +0.3
35,939 + GFF3093 0.20 -0.6
35,939 + GFF3093 0.20 +0.5
35,940 - GFF3093 0.20 -0.6
35,940 - GFF3093 0.20 -0.5
35,940 - GFF3093 0.20 -1.3
35,940 - GFF3093 0.20 -1.0
35,940 - GFF3093 0.20 -0.8
35,940 - GFF3093 0.20 -1.4
35,940 - GFF3093 0.20 -0.3

Or see this region's nucleotide sequence