Strain Fitness in Pseudomonas sp. DMC3 around GFF3045

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3043 and GFF3044 are separated by 210 nucleotidesGFF3044 and GFF3045 are separated by 57 nucleotidesGFF3045 and GFF3046 are separated by 1 nucleotidesGFF3046 and GFF3047 are separated by 138 nucleotides GFF3043 - Flavin reductase, at 447,214 to 447,699 GFF3043 GFF3044 - hypothetical protein, at 447,910 to 448,299 GFF3044 GFF3045 - HTH-type transcriptional repressor NanR, at 448,357 to 449,121 GFF3045 GFF3046 - NADH pyrophosphatase, at 449,123 to 449,686 GFF3046 GFF3047 - hypothetical protein, at 449,825 to 450,121 GFF3047 Position (kb) 448 449 450Strain fitness (log2 ratio) -2 -1 0 1at 447.373 kb on + strand, within GFF3043at 447.373 kb on + strand, within GFF3043at 447.373 kb on + strand, within GFF3043at 447.373 kb on + strand, within GFF3043at 447.373 kb on + strand, within GFF3043at 447.373 kb on + strand, within GFF3043at 447.373 kb on + strand, within GFF3043at 447.374 kb on - strand, within GFF3043at 447.374 kb on - strand, within GFF3043at 447.374 kb on - strand, within GFF3043at 447.457 kb on + strand, within GFF3043at 447.577 kb on + strand, within GFF3043at 447.658 kb on + strandat 447.658 kb on + strandat 447.659 kb on - strandat 447.659 kb on - strandat 447.821 kb on + strandat 447.822 kb on - strandat 447.851 kb on + strandat 447.852 kb on - strandat 447.925 kb on + strandat 447.970 kb on + strand, within GFF3044at 447.970 kb on + strand, within GFF3044at 447.970 kb on + strand, within GFF3044at 447.971 kb on - strand, within GFF3044at 447.971 kb on - strand, within GFF3044at 447.971 kb on - strand, within GFF3044at 447.971 kb on - strand, within GFF3044at 448.216 kb on + strand, within GFF3044at 448.217 kb on - strand, within GFF3044at 448.598 kb on + strand, within GFF3045at 448.633 kb on + strand, within GFF3045at 448.634 kb on - strand, within GFF3045at 448.792 kb on + strand, within GFF3045at 448.792 kb on + strand, within GFF3045at 448.793 kb on - strand, within GFF3045at 448.867 kb on + strand, within GFF3045at 448.868 kb on - strand, within GFF3045at 449.235 kb on - strand, within GFF3046at 449.285 kb on + strand, within GFF3046at 449.285 kb on + strand, within GFF3046at 449.285 kb on + strand, within GFF3046at 449.285 kb on + strand, within GFF3046at 449.285 kb on + strand, within GFF3046at 449.285 kb on + strand, within GFF3046at 449.468 kb on + strand, within GFF3046at 449.469 kb on - strand, within GFF3046at 449.469 kb on - strand, within GFF3046at 449.469 kb on - strand, within GFF3046at 449.469 kb on - strand, within GFF3046at 449.511 kb on - strand, within GFF3046at 449.531 kb on + strand, within GFF3046at 449.531 kb on + strand, within GFF3046at 449.531 kb on + strand, within GFF3046at 449.531 kb on + strand, within GFF3046at 449.531 kb on + strand, within GFF3046at 449.532 kb on - strand, within GFF3046at 449.573 kb on + strand, within GFF3046at 449.573 kb on + strand, within GFF3046at 449.573 kb on + strand, within GFF3046at 449.574 kb on - strand, within GFF3046at 449.574 kb on - strand, within GFF3046at 449.574 kb on - strand, within GFF3046at 449.574 kb on - strand, within GFF3046at 449.609 kb on - strand, within GFF3046at 449.633 kb on + strandat 449.634 kb on - strandat 449.642 kb on + strandat 449.642 kb on + strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.643 kb on - strandat 449.826 kb on + strandat 449.826 kb on + strandat 449.826 kb on + strandat 449.937 kb on + strand, within GFF3047at 449.937 kb on + strand, within GFF3047at 450.063 kb on + strand, within GFF3047at 450.063 kb on + strand, within GFF3047at 450.064 kb on - strand, within GFF3047at 450.064 kb on - strand, within GFF3047at 450.064 kb on - strand, within GFF3047at 450.064 kb on - strand, within GFF3047at 450.072 kb on + strand, within GFF3047at 450.072 kb on + strand, within GFF3047at 450.089 kb on + strand, within GFF3047at 450.089 kb on + strand, within GFF3047at 450.090 kb on - strand, within GFF3047at 450.091 kb on + strand, within GFF3047at 450.111 kb on + strandat 450.121 kb on + strandat 450.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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447,373 + GFF3043 0.33 +0.5
447,373 + GFF3043 0.33 -0.8
447,373 + GFF3043 0.33 -0.1
447,373 + GFF3043 0.33 +0.6
447,373 + GFF3043 0.33 -0.0
447,373 + GFF3043 0.33 -0.8
447,373 + GFF3043 0.33 -0.1
447,374 - GFF3043 0.33 +0.3
447,374 - GFF3043 0.33 +1.0
447,374 - GFF3043 0.33 +0.5
447,457 + GFF3043 0.50 +0.4
447,577 + GFF3043 0.75 -0.5
447,658 + -1.8
447,658 + +0.6
447,659 - +0.1
447,659 - -1.6
447,821 + -0.7
447,822 - -0.5
447,851 + +0.4
447,852 - +0.7
447,925 + +0.5
447,970 + GFF3044 0.15 +0.1
447,970 + GFF3044 0.15 +0.4
447,970 + GFF3044 0.15 +0.9
447,971 - GFF3044 0.16 +0.6
447,971 - GFF3044 0.16 +0.7
447,971 - GFF3044 0.16 -1.2
447,971 - GFF3044 0.16 +0.0
448,216 + GFF3044 0.78 -0.8
448,217 - GFF3044 0.79 -0.1
448,598 + GFF3045 0.32 -2.2
448,633 + GFF3045 0.36 -1.9
448,634 - GFF3045 0.36 +0.2
448,792 + GFF3045 0.57 -0.3
448,792 + GFF3045 0.57 -1.2
448,793 - GFF3045 0.57 -0.0
448,867 + GFF3045 0.67 -0.3
448,868 - GFF3045 0.67 -1.5
449,235 - GFF3046 0.20 +0.0
449,285 + GFF3046 0.29 -0.0
449,285 + GFF3046 0.29 +1.0
449,285 + GFF3046 0.29 -0.3
449,285 + GFF3046 0.29 -0.3
449,285 + GFF3046 0.29 +1.3
449,285 + GFF3046 0.29 -0.1
449,468 + GFF3046 0.61 +0.3
449,469 - GFF3046 0.61 +0.6
449,469 - GFF3046 0.61 +0.3
449,469 - GFF3046 0.61 +0.6
449,469 - GFF3046 0.61 +0.3
449,511 - GFF3046 0.69 +0.1
449,531 + GFF3046 0.72 -1.1
449,531 + GFF3046 0.72 -0.0
449,531 + GFF3046 0.72 -0.4
449,531 + GFF3046 0.72 -1.0
449,531 + GFF3046 0.72 +0.6
449,532 - GFF3046 0.73 -1.0
449,573 + GFF3046 0.80 -0.9
449,573 + GFF3046 0.80 +0.3
449,573 + GFF3046 0.80 +0.8
449,574 - GFF3046 0.80 +0.2
449,574 - GFF3046 0.80 -0.5
449,574 - GFF3046 0.80 +0.3
449,574 - GFF3046 0.80 +0.2
449,609 - GFF3046 0.86 -0.8
449,633 + -0.3
449,634 - +0.0
449,642 + +1.2
449,642 + -0.1
449,643 - -1.9
449,643 - -0.7
449,643 - -0.6
449,643 - -1.1
449,643 - +0.1
449,643 - +0.4
449,643 - -2.0
449,643 - -1.0
449,643 - -0.4
449,643 - +0.6
449,643 - +0.7
449,643 - -0.5
449,643 - -0.4
449,826 + -0.4
449,826 + -0.6
449,826 + +0.4
449,937 + GFF3047 0.38 -0.3
449,937 + GFF3047 0.38 +0.3
450,063 + GFF3047 0.80 -0.4
450,063 + GFF3047 0.80 +0.5
450,064 - GFF3047 0.80 -0.4
450,064 - GFF3047 0.80 +0.3
450,064 - GFF3047 0.80 -0.7
450,064 - GFF3047 0.80 -0.2
450,072 + GFF3047 0.83 -0.7
450,072 + GFF3047 0.83 +0.3
450,089 + GFF3047 0.89 -1.2
450,089 + GFF3047 0.89 -0.2
450,090 - GFF3047 0.89 -0.1
450,091 + GFF3047 0.90 -0.3
450,111 + +0.3
450,121 + +0.1
450,121 + +0.2

Or see this region's nucleotide sequence