Strain Fitness in Pseudomonas sp. DMC3 around GFF2795

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2793 and GFF2794 are separated by 25 nucleotidesGFF2794 and GFF2795 are separated by 96 nucleotidesGFF2795 and GFF2796 overlap by 179 nucleotidesGFF2796 and GFF2797 are separated by 212 nucleotides GFF2793 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 124,175 to 126,385 GFF2793 GFF2794 - hypothetical protein, at 126,411 to 126,743 GFF2794 GFF2795 - hypothetical protein, at 126,840 to 127,484 GFF2795 GFF2796 - HTH-type transcriptional repressor NemR, at 127,306 to 127,890 GFF2796 GFF2797 - hypothetical protein, at 128,103 to 128,780 GFF2797 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1at 125.906 kb on + strand, within GFF2793at 125.906 kb on + strand, within GFF2793at 126.227 kb on + strandat 126.305 kb on + strandat 126.305 kb on + strandat 126.305 kb on + strandat 126.305 kb on + strandat 126.305 kb on + strandat 126.306 kb on - strandat 126.321 kb on + strandat 126.343 kb on + strandat 126.352 kb on + strandat 126.439 kb on - strandat 126.511 kb on + strand, within GFF2794at 126.663 kb on + strand, within GFF2794at 126.686 kb on + strand, within GFF2794at 126.686 kb on + strand, within GFF2794at 126.686 kb on + strand, within GFF2794at 126.687 kb on - strand, within GFF2794at 126.693 kb on + strand, within GFF2794at 126.694 kb on - strand, within GFF2794at 126.722 kb on + strandat 127.285 kb on + strand, within GFF2795at 127.286 kb on - strand, within GFF2795at 127.406 kb on + strandat 127.406 kb on + strandat 127.406 kb on + strandat 127.407 kb on - strandat 127.407 kb on - strandat 127.407 kb on - strandat 127.628 kb on + strand, within GFF2796at 127.628 kb on + strand, within GFF2796at 127.629 kb on - strand, within GFF2796at 127.694 kb on + strand, within GFF2796at 127.707 kb on - strand, within GFF2796at 127.707 kb on - strand, within GFF2796at 127.730 kb on + strand, within GFF2796at 127.730 kb on + strand, within GFF2796at 127.731 kb on - strand, within GFF2796at 127.731 kb on - strand, within GFF2796at 127.731 kb on - strand, within GFF2796at 127.752 kb on - strand, within GFF2796at 127.758 kb on - strand, within GFF2796at 127.758 kb on - strand, within GFF2796at 127.912 kb on + strandat 127.913 kb on - strandat 127.923 kb on + strandat 127.924 kb on - strandat 128.011 kb on + strandat 128.011 kb on + strandat 128.011 kb on + strandat 128.011 kb on + strandat 128.011 kb on + strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.196 kb on + strand, within GFF2797at 128.196 kb on + strand, within GFF2797at 128.196 kb on + strand, within GFF2797at 128.197 kb on - strand, within GFF2797at 128.197 kb on - strand, within GFF2797at 128.197 kb on - strand, within GFF2797at 128.197 kb on - strand, within GFF2797at 128.397 kb on + strand, within GFF2797at 128.397 kb on + strand, within GFF2797at 128.397 kb on + strand, within GFF2797at 128.397 kb on + strand, within GFF2797

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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125,906 + GFF2793 0.78 -0.3
125,906 + GFF2793 0.78 +0.5
126,227 + +0.1
126,305 + -0.3
126,305 + +1.3
126,305 + +0.6
126,305 + -0.5
126,305 + +0.1
126,306 - -0.2
126,321 + -0.3
126,343 + +0.2
126,352 + -1.3
126,439 - -0.7
126,511 + GFF2794 0.30 -0.7
126,663 + GFF2794 0.76 -0.5
126,686 + GFF2794 0.83 -0.9
126,686 + GFF2794 0.83 +0.3
126,686 + GFF2794 0.83 +0.7
126,687 - GFF2794 0.83 +0.3
126,693 + GFF2794 0.85 +0.5
126,694 - GFF2794 0.85 -0.1
126,722 + +0.3
127,285 + GFF2795 0.69 -0.7
127,286 - GFF2795 0.69 -1.2
127,406 + -0.7
127,406 + -0.7
127,406 + +0.7
127,407 - +0.4
127,407 - -1.0
127,407 - +0.3
127,628 + GFF2796 0.55 -0.0
127,628 + GFF2796 0.55 -1.7
127,629 - GFF2796 0.55 +0.5
127,694 + GFF2796 0.66 -1.2
127,707 - GFF2796 0.69 +0.3
127,707 - GFF2796 0.69 -0.6
127,730 + GFF2796 0.72 -0.9
127,730 + GFF2796 0.72 +0.0
127,731 - GFF2796 0.73 -0.3
127,731 - GFF2796 0.73 -2.2
127,731 - GFF2796 0.73 -1.3
127,752 - GFF2796 0.76 +1.3
127,758 - GFF2796 0.77 +0.3
127,758 - GFF2796 0.77 -0.7
127,912 + -1.7
127,913 - -0.6
127,923 + -0.1
127,924 - +0.1
128,011 + -0.2
128,011 + +0.1
128,011 + -0.3
128,011 + -0.6
128,011 + +1.3
128,012 - -1.2
128,012 - +0.4
128,012 - -0.3
128,012 - -2.8
128,196 + GFF2797 0.14 +1.4
128,196 + GFF2797 0.14 -1.0
128,196 + GFF2797 0.14 -0.1
128,197 - GFF2797 0.14 -0.1
128,197 - GFF2797 0.14 -1.9
128,197 - GFF2797 0.14 +0.3
128,197 - GFF2797 0.14 +1.3
128,397 + GFF2797 0.43 +0.1
128,397 + GFF2797 0.43 -0.9
128,397 + GFF2797 0.43 +0.1
128,397 + GFF2797 0.43 +0.6

Or see this region's nucleotide sequence