Strain Fitness in Pseudomonas sp. DMC3 around GFF2736

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2734 and GFF2735 are separated by 81 nucleotidesGFF2735 and GFF2736 overlap by 1 nucleotidesGFF2736 and GFF2737 are separated by 67 nucleotides GFF2734 - HTH-type transcriptional activator RhaS, at 60,008 to 60,904 GFF2734 GFF2735 - putative RNA polymerase sigma factor FecI, at 60,986 to 61,495 GFF2735 GFF2736 - Protein FecR, at 61,495 to 62,445 GFF2736 GFF2737 - Ferrichrome receptor FcuA, at 62,513 to 64,915 GFF2737 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 60.707 kb on + strand, within GFF2734at 60.707 kb on + strand, within GFF2734at 60.707 kb on + strand, within GFF2734at 60.708 kb on - strand, within GFF2734at 60.962 kb on + strandat 60.962 kb on + strandat 60.963 kb on - strandat 60.997 kb on + strandat 60.997 kb on + strandat 60.997 kb on + strandat 60.997 kb on + strandat 60.997 kb on + strandat 60.998 kb on - strandat 60.998 kb on - strandat 60.998 kb on - strandat 60.998 kb on - strandat 60.998 kb on - strandat 61.032 kb on - strandat 61.242 kb on - strand, within GFF2735at 61.338 kb on + strand, within GFF2735at 61.338 kb on + strand, within GFF2735at 61.339 kb on - strand, within GFF2735at 61.339 kb on - strand, within GFF2735at 61.339 kb on - strand, within GFF2735at 61.443 kb on + strand, within GFF2735at 61.444 kb on - strand, within GFF2735at 61.451 kb on + strandat 61.451 kb on + strandat 61.452 kb on - strandat 61.452 kb on - strandat 61.452 kb on - strandat 61.466 kb on + strandat 61.467 kb on - strandat 61.467 kb on - strandat 61.987 kb on - strand, within GFF2736at 62.002 kb on + strand, within GFF2736at 62.120 kb on + strand, within GFF2736at 62.524 kb on - strandat 62.589 kb on + strandat 62.633 kb on + strandat 62.634 kb on - strandat 62.634 kb on - strandat 62.764 kb on - strand, within GFF2737at 62.831 kb on + strand, within GFF2737at 62.831 kb on + strand, within GFF2737at 62.832 kb on - strand, within GFF2737at 62.832 kb on - strand, within GFF2737at 62.832 kb on - strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.833 kb on + strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.834 kb on - strand, within GFF2737at 62.839 kb on - strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.865 kb on + strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.866 kb on - strand, within GFF2737at 62.919 kb on + strand, within GFF2737at 62.920 kb on - strand, within GFF2737at 62.920 kb on - strand, within GFF2737at 62.920 kb on - strand, within GFF2737at 63.008 kb on + strand, within GFF2737at 63.008 kb on + strand, within GFF2737at 63.008 kb on + strand, within GFF2737at 63.008 kb on + strand, within GFF2737at 63.008 kb on + strand, within GFF2737at 63.009 kb on - strand, within GFF2737at 63.009 kb on - strand, within GFF2737at 63.009 kb on - strand, within GFF2737at 63.064 kb on + strand, within GFF2737at 63.158 kb on + strand, within GFF2737at 63.159 kb on - strand, within GFF2737at 63.159 kb on - strand, within GFF2737at 63.159 kb on - strand, within GFF2737at 63.159 kb on - strand, within GFF2737at 63.168 kb on + strand, within GFF2737at 63.168 kb on + strand, within GFF2737at 63.169 kb on - strand, within GFF2737at 63.169 kb on - strand, within GFF2737at 63.170 kb on + strand, within GFF2737at 63.170 kb on + strand, within GFF2737at 63.170 kb on + strand, within GFF2737at 63.171 kb on - strand, within GFF2737at 63.188 kb on + strand, within GFF2737at 63.188 kb on + strand, within GFF2737at 63.188 kb on + strand, within GFF2737at 63.189 kb on - strand, within GFF2737at 63.189 kb on - strand, within GFF2737at 63.189 kb on - strand, within GFF2737at 63.189 kb on - strand, within GFF2737at 63.189 kb on - strand, within GFF2737at 63.189 kb on - strand, within GFF2737at 63.276 kb on + strand, within GFF2737at 63.276 kb on + strand, within GFF2737at 63.277 kb on - strand, within GFF2737at 63.277 kb on - strand, within GFF2737at 63.344 kb on + strand, within GFF2737at 63.345 kb on - strand, within GFF2737at 63.345 kb on - strand, within GFF2737at 63.345 kb on - strand, within GFF2737at 63.345 kb on - strand, within GFF2737

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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60,707 + GFF2734 0.78 -0.3
60,707 + GFF2734 0.78 +0.7
60,707 + GFF2734 0.78 +0.6
60,708 - GFF2734 0.78 -1.6
60,962 + -0.1
60,962 + +0.0
60,963 - +1.1
60,997 + +0.2
60,997 + -0.2
60,997 + +0.0
60,997 + +0.2
60,997 + -0.3
60,998 - -0.7
60,998 - -1.0
60,998 - +0.2
60,998 - +0.3
60,998 - +0.8
61,032 - -0.0
61,242 - GFF2735 0.50 -1.9
61,338 + GFF2735 0.69 +0.9
61,338 + GFF2735 0.69 +0.3
61,339 - GFF2735 0.69 -0.2
61,339 - GFF2735 0.69 +0.1
61,339 - GFF2735 0.69 +1.4
61,443 + GFF2735 0.90 -0.4
61,444 - GFF2735 0.90 +0.4
61,451 + +0.3
61,451 + -0.3
61,452 - -0.8
61,452 - -0.7
61,452 - -0.3
61,466 + -0.4
61,467 - +1.8
61,467 - -0.7
61,987 - GFF2736 0.52 -1.3
62,002 + GFF2736 0.53 +0.0
62,120 + GFF2736 0.66 -1.1
62,524 - -0.1
62,589 + -0.6
62,633 + -0.1
62,634 - -0.3
62,634 - +0.8
62,764 - GFF2737 0.10 -0.4
62,831 + GFF2737 0.13 +0.3
62,831 + GFF2737 0.13 -0.3
62,832 - GFF2737 0.13 +1.0
62,832 - GFF2737 0.13 +0.3
62,832 - GFF2737 0.13 +0.4
62,833 + GFF2737 0.13 -0.7
62,833 + GFF2737 0.13 -1.7
62,833 + GFF2737 0.13 -0.1
62,833 + GFF2737 0.13 -0.0
62,833 + GFF2737 0.13 +1.0
62,833 + GFF2737 0.13 +0.1
62,833 + GFF2737 0.13 -1.6
62,833 + GFF2737 0.13 -0.7
62,833 + GFF2737 0.13 +0.6
62,833 + GFF2737 0.13 +0.3
62,833 + GFF2737 0.13 -2.1
62,834 - GFF2737 0.13 +1.1
62,834 - GFF2737 0.13 -0.0
62,834 - GFF2737 0.13 -0.9
62,834 - GFF2737 0.13 -0.7
62,834 - GFF2737 0.13 +0.5
62,834 - GFF2737 0.13 +0.0
62,834 - GFF2737 0.13 +1.0
62,834 - GFF2737 0.13 +0.1
62,834 - GFF2737 0.13 -1.4
62,834 - GFF2737 0.13 +0.9
62,834 - GFF2737 0.13 +0.1
62,834 - GFF2737 0.13 -1.6
62,834 - GFF2737 0.13 -0.9
62,834 - GFF2737 0.13 +0.1
62,839 - GFF2737 0.14 -0.4
62,865 + GFF2737 0.15 +0.6
62,865 + GFF2737 0.15 -0.7
62,865 + GFF2737 0.15 +0.1
62,865 + GFF2737 0.15 +0.3
62,865 + GFF2737 0.15 -0.1
62,865 + GFF2737 0.15 -0.7
62,865 + GFF2737 0.15 -1.2
62,865 + GFF2737 0.15 +0.5
62,865 + GFF2737 0.15 -0.3
62,865 + GFF2737 0.15 +0.4
62,865 + GFF2737 0.15 -0.1
62,866 - GFF2737 0.15 -0.0
62,866 - GFF2737 0.15 +0.8
62,866 - GFF2737 0.15 -1.0
62,866 - GFF2737 0.15 +0.7
62,866 - GFF2737 0.15 -0.4
62,866 - GFF2737 0.15 +0.3
62,866 - GFF2737 0.15 -0.8
62,866 - GFF2737 0.15 +1.1
62,866 - GFF2737 0.15 -0.6
62,866 - GFF2737 0.15 -0.3
62,919 + GFF2737 0.17 -0.1
62,920 - GFF2737 0.17 -0.9
62,920 - GFF2737 0.17 +0.8
62,920 - GFF2737 0.17 -0.2
63,008 + GFF2737 0.21 -0.7
63,008 + GFF2737 0.21 -1.9
63,008 + GFF2737 0.21 +0.3
63,008 + GFF2737 0.21 -0.9
63,008 + GFF2737 0.21 -0.5
63,009 - GFF2737 0.21 +0.1
63,009 - GFF2737 0.21 -0.4
63,009 - GFF2737 0.21 -2.1
63,064 + GFF2737 0.23 +0.7
63,158 + GFF2737 0.27 -0.9
63,159 - GFF2737 0.27 +1.0
63,159 - GFF2737 0.27 -0.3
63,159 - GFF2737 0.27 -0.7
63,159 - GFF2737 0.27 -0.2
63,168 + GFF2737 0.27 +0.0
63,168 + GFF2737 0.27 -1.2
63,169 - GFF2737 0.27 +0.7
63,169 - GFF2737 0.27 +0.3
63,170 + GFF2737 0.27 -0.3
63,170 + GFF2737 0.27 -0.3
63,170 + GFF2737 0.27 -0.3
63,171 - GFF2737 0.27 -1.9
63,188 + GFF2737 0.28 -0.7
63,188 + GFF2737 0.28 +0.1
63,188 + GFF2737 0.28 +1.3
63,189 - GFF2737 0.28 -0.7
63,189 - GFF2737 0.28 -0.9
63,189 - GFF2737 0.28 -0.8
63,189 - GFF2737 0.28 -0.2
63,189 - GFF2737 0.28 +0.7
63,189 - GFF2737 0.28 -0.3
63,276 + GFF2737 0.32 +0.0
63,276 + GFF2737 0.32 +1.7
63,277 - GFF2737 0.32 -0.8
63,277 - GFF2737 0.32 -1.6
63,344 + GFF2737 0.35 +0.1
63,345 - GFF2737 0.35 +0.4
63,345 - GFF2737 0.35 +1.3
63,345 - GFF2737 0.35 +1.3
63,345 - GFF2737 0.35 +1.3

Or see this region's nucleotide sequence