Strain Fitness in Pseudomonas sp. DMC3 around GFF2719

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2718 and GFF2719 are separated by 18 nucleotidesGFF2719 and GFF2720 are separated by 12 nucleotides GFF2718 - Acetyl-coenzyme A synthetase, at 40,335 to 41,999 GFF2718 GFF2719 - putative oxidoreductase, at 42,018 to 42,779 GFF2719 GFF2720 - Acetyl-CoA acetyltransferase, at 42,792 to 43,985 GFF2720 Position (kb) 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 41.061 kb on + strand, within GFF2718at 41.061 kb on + strand, within GFF2718at 41.071 kb on - strand, within GFF2718at 41.071 kb on - strand, within GFF2718at 41.071 kb on - strand, within GFF2718at 41.111 kb on + strand, within GFF2718at 41.118 kb on + strand, within GFF2718at 41.118 kb on + strand, within GFF2718at 41.118 kb on + strand, within GFF2718at 41.119 kb on - strand, within GFF2718at 41.119 kb on - strand, within GFF2718at 41.119 kb on - strand, within GFF2718at 41.119 kb on - strand, within GFF2718at 41.166 kb on + strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.167 kb on - strand, within GFF2718at 41.347 kb on - strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.466 kb on + strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.467 kb on - strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.580 kb on + strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.581 kb on - strand, within GFF2718at 41.583 kb on + strand, within GFF2718at 41.583 kb on + strand, within GFF2718at 41.583 kb on + strand, within GFF2718at 41.583 kb on + strand, within GFF2718at 41.584 kb on - strand, within GFF2718at 41.584 kb on - strand, within GFF2718at 41.584 kb on - strand, within GFF2718at 41.587 kb on + strand, within GFF2718at 41.588 kb on - strand, within GFF2718at 41.588 kb on - strand, within GFF2718at 41.621 kb on + strand, within GFF2718at 41.660 kb on + strand, within GFF2718at 41.661 kb on - strand, within GFF2718at 41.661 kb on - strand, within GFF2718at 41.845 kb on + strandat 41.845 kb on + strandat 41.845 kb on + strandat 41.846 kb on - strandat 41.846 kb on - strandat 41.846 kb on - strandat 41.846 kb on - strandat 41.846 kb on - strandat 41.846 kb on - strandat 41.937 kb on - strandat 42.436 kb on + strand, within GFF2719at 42.437 kb on - strand, within GFF2719at 42.688 kb on - strand, within GFF2719at 42.777 kb on + strandat 42.777 kb on + strandat 42.777 kb on + strandat 42.777 kb on + strandat 42.778 kb on - strandat 42.778 kb on - strandat 42.787 kb on + strandat 42.788 kb on - strandat 42.788 kb on - strandat 42.788 kb on - strandat 42.788 kb on - strandat 42.788 kb on - strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.797 kb on + strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.798 kb on - strandat 42.971 kb on - strand, within GFF2720at 43.257 kb on + strand, within GFF2720at 43.438 kb on + strand, within GFF2720at 43.438 kb on + strand, within GFF2720

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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41,061 + GFF2718 0.44 -0.9
41,061 + GFF2718 0.44 -0.4
41,071 - GFF2718 0.44 -0.1
41,071 - GFF2718 0.44 -0.9
41,071 - GFF2718 0.44 +0.5
41,111 + GFF2718 0.47 -0.7
41,118 + GFF2718 0.47 -2.3
41,118 + GFF2718 0.47 -0.6
41,118 + GFF2718 0.47 +0.1
41,119 - GFF2718 0.47 -0.8
41,119 - GFF2718 0.47 -0.3
41,119 - GFF2718 0.47 -0.1
41,119 - GFF2718 0.47 +0.3
41,166 + GFF2718 0.50 +0.7
41,167 - GFF2718 0.50 +1.1
41,167 - GFF2718 0.50 +0.0
41,167 - GFF2718 0.50 +0.4
41,167 - GFF2718 0.50 -0.1
41,167 - GFF2718 0.50 +1.6
41,167 - GFF2718 0.50 -0.5
41,167 - GFF2718 0.50 +0.9
41,167 - GFF2718 0.50 +0.1
41,347 - GFF2718 0.61 +0.0
41,466 + GFF2718 0.68 +1.0
41,466 + GFF2718 0.68 +0.9
41,466 + GFF2718 0.68 -1.2
41,466 + GFF2718 0.68 +0.9
41,466 + GFF2718 0.68 +0.0
41,466 + GFF2718 0.68 +0.9
41,466 + GFF2718 0.68 +0.2
41,466 + GFF2718 0.68 +1.3
41,467 - GFF2718 0.68 -0.2
41,467 - GFF2718 0.68 -0.1
41,467 - GFF2718 0.68 +0.1
41,467 - GFF2718 0.68 -0.3
41,467 - GFF2718 0.68 +0.3
41,467 - GFF2718 0.68 +0.3
41,467 - GFF2718 0.68 +2.0
41,580 + GFF2718 0.75 -0.9
41,580 + GFF2718 0.75 -0.1
41,580 + GFF2718 0.75 +0.5
41,580 + GFF2718 0.75 +1.1
41,580 + GFF2718 0.75 +0.7
41,580 + GFF2718 0.75 +1.6
41,580 + GFF2718 0.75 +0.3
41,580 + GFF2718 0.75 -0.9
41,580 + GFF2718 0.75 +0.1
41,580 + GFF2718 0.75 -0.1
41,580 + GFF2718 0.75 +0.3
41,580 + GFF2718 0.75 +1.0
41,581 - GFF2718 0.75 -1.2
41,581 - GFF2718 0.75 +1.0
41,581 - GFF2718 0.75 +0.3
41,581 - GFF2718 0.75 -0.2
41,581 - GFF2718 0.75 -1.7
41,581 - GFF2718 0.75 +0.9
41,581 - GFF2718 0.75 +0.4
41,583 + GFF2718 0.75 +0.4
41,583 + GFF2718 0.75 +0.3
41,583 + GFF2718 0.75 -0.7
41,583 + GFF2718 0.75 +0.6
41,584 - GFF2718 0.75 +0.4
41,584 - GFF2718 0.75 +0.0
41,584 - GFF2718 0.75 -0.6
41,587 + GFF2718 0.75 -0.8
41,588 - GFF2718 0.75 +0.8
41,588 - GFF2718 0.75 +0.3
41,621 + GFF2718 0.77 -0.1
41,660 + GFF2718 0.80 +1.0
41,661 - GFF2718 0.80 -1.1
41,661 - GFF2718 0.80 -0.3
41,845 + -1.6
41,845 + -1.2
41,845 + +0.9
41,846 - +0.4
41,846 - +0.7
41,846 - -2.2
41,846 - -0.3
41,846 - -0.2
41,846 - +0.5
41,937 - +0.2
42,436 + GFF2719 0.55 -1.6
42,437 - GFF2719 0.55 -1.5
42,688 - GFF2719 0.88 -0.8
42,777 + -0.1
42,777 + +0.0
42,777 + +0.6
42,777 + +1.1
42,778 - -0.4
42,778 - -0.3
42,787 + +0.8
42,788 - -1.3
42,788 - +0.2
42,788 - +1.3
42,788 - +1.0
42,788 - +0.2
42,797 + -0.8
42,797 + -0.4
42,797 + +0.6
42,797 + +1.7
42,797 + +0.9
42,797 + -0.3
42,797 + +0.7
42,797 + +0.4
42,798 - +0.3
42,798 - -0.1
42,798 - +0.4
42,798 - +0.4
42,798 - +0.7
42,798 - -1.0
42,798 - +0.4
42,798 - -0.4
42,798 - +0.5
42,798 - +0.0
42,798 - -0.1
42,971 - GFF2720 0.15 +0.1
43,257 + GFF2720 0.39 +0.4
43,438 + GFF2720 0.54 -0.0
43,438 + GFF2720 0.54 -0.4

Or see this region's nucleotide sequence