Strain Fitness in Pseudomonas sp. DMC3 around GFF266

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF264 and GFF265 are separated by 22 nucleotidesGFF265 and GFF266 are separated by 143 nucleotidesGFF266 and GFF267 are separated by 120 nucleotidesGFF267 and GFF268 are separated by 41 nucleotides GFF264 - Phosphoenolpyruvate-dependent phosphotransferase system, at 295,037 to 297,316 GFF264 GFF265 - RNA pyrophosphohydrolase, at 297,339 to 297,818 GFF265 GFF266 - putative phosphatase, at 297,962 to 298,618 GFF266 GFF267 - hypothetical protein, at 298,739 to 299,152 GFF267 GFF268 - L-threonine dehydratase biosynthetic IlvA, at 299,194 to 300,708 GFF268 Position (kb) 297 298 299Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 296.997 kb on + strand, within GFF264at 297.024 kb on + strand, within GFF264at 297.195 kb on + strandat 297.245 kb on - strandat 297.281 kb on - strandat 297.281 kb on - strandat 297.307 kb on + strandat 297.307 kb on + strandat 297.308 kb on - strandat 297.352 kb on - strandat 297.388 kb on + strand, within GFF265at 297.389 kb on - strand, within GFF265at 297.389 kb on - strand, within GFF265at 297.433 kb on + strand, within GFF265at 297.433 kb on + strand, within GFF265at 297.433 kb on + strand, within GFF265at 297.433 kb on + strand, within GFF265at 297.434 kb on - strand, within GFF265at 297.434 kb on - strand, within GFF265at 297.434 kb on - strand, within GFF265at 297.434 kb on - strand, within GFF265at 297.608 kb on + strand, within GFF265at 297.618 kb on + strand, within GFF265at 297.618 kb on + strand, within GFF265at 297.619 kb on - strand, within GFF265at 297.667 kb on + strand, within GFF265at 297.737 kb on + strand, within GFF265at 297.751 kb on - strand, within GFF265at 297.889 kb on + strandat 297.889 kb on + strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.894 kb on + strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.954 kb on + strandat 297.975 kb on + strandat 298.031 kb on + strand, within GFF266at 298.032 kb on - strand, within GFF266at 298.032 kb on - strand, within GFF266at 298.067 kb on + strand, within GFF266at 298.068 kb on - strand, within GFF266at 298.068 kb on - strand, within GFF266at 298.091 kb on + strand, within GFF266at 298.100 kb on + strand, within GFF266at 298.130 kb on + strand, within GFF266at 298.131 kb on - strand, within GFF266at 298.131 kb on - strand, within GFF266at 298.192 kb on + strand, within GFF266at 298.199 kb on + strand, within GFF266at 298.199 kb on + strand, within GFF266at 298.200 kb on - strand, within GFF266at 298.200 kb on - strand, within GFF266at 298.386 kb on - strand, within GFF266at 298.484 kb on + strand, within GFF266at 298.484 kb on + strand, within GFF266at 298.484 kb on + strand, within GFF266at 298.484 kb on + strand, within GFF266at 298.484 kb on + strand, within GFF266at 298.484 kb on + strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.485 kb on - strand, within GFF266at 298.490 kb on + strand, within GFF266at 298.490 kb on + strand, within GFF266at 298.490 kb on + strand, within GFF266at 298.491 kb on - strand, within GFF266at 298.491 kb on - strand, within GFF266at 298.668 kb on + strandat 298.669 kb on - strandat 298.669 kb on - strandat 298.669 kb on - strandat 298.669 kb on - strandat 298.669 kb on - strandat 298.669 kb on - strandat 298.669 kb on - strandat 298.687 kb on - strandat 298.687 kb on - strandat 298.896 kb on + strand, within GFF267at 298.897 kb on - strand, within GFF267at 299.035 kb on + strand, within GFF267at 299.187 kb on + strandat 299.187 kb on + strandat 299.213 kb on + strandat 299.213 kb on + strandat 299.213 kb on + strandat 299.214 kb on - strandat 299.214 kb on - strandat 299.214 kb on - strandat 299.214 kb on - strandat 299.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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296,997 + GFF264 0.86 -3.3
297,024 + GFF264 0.87 -2.4
297,195 + -3.1
297,245 - -2.8
297,281 - -1.1
297,281 - -2.3
297,307 + -3.0
297,307 + -0.8
297,308 - -3.2
297,352 - -0.5
297,388 + GFF265 0.10 -2.6
297,389 - GFF265 0.10 +0.8
297,389 - GFF265 0.10 +1.5
297,433 + GFF265 0.20 -2.8
297,433 + GFF265 0.20 +0.0
297,433 + GFF265 0.20 -2.4
297,433 + GFF265 0.20 -2.2
297,434 - GFF265 0.20 -0.6
297,434 - GFF265 0.20 -0.1
297,434 - GFF265 0.20 -0.9
297,434 - GFF265 0.20 -0.8
297,608 + GFF265 0.56 -0.8
297,618 + GFF265 0.58 -1.4
297,618 + GFF265 0.58 -1.6
297,619 - GFF265 0.58 -0.4
297,667 + GFF265 0.68 +0.8
297,737 + GFF265 0.83 -1.0
297,751 - GFF265 0.86 +0.7
297,889 + +1.4
297,889 + +0.2
297,890 - +0.3
297,890 - +0.3
297,890 - -0.6
297,890 - +1.7
297,890 - -0.5
297,894 + -0.9
297,895 - +0.9
297,895 - +0.1
297,895 - +0.2
297,895 - +0.9
297,895 - +0.6
297,895 - -0.2
297,895 - +1.8
297,954 + +1.4
297,975 + -2.6
298,031 + GFF266 0.11 -0.8
298,032 - GFF266 0.11 -2.5
298,032 - GFF266 0.11 -0.6
298,067 + GFF266 0.16 -1.8
298,068 - GFF266 0.16 -1.3
298,068 - GFF266 0.16 -0.6
298,091 + GFF266 0.20 -1.3
298,100 + GFF266 0.21 -1.6
298,130 + GFF266 0.26 -0.7
298,131 - GFF266 0.26 -0.6
298,131 - GFF266 0.26 -0.8
298,192 + GFF266 0.35 -1.8
298,199 + GFF266 0.36 -0.8
298,199 + GFF266 0.36 -1.9
298,200 - GFF266 0.36 -2.0
298,200 - GFF266 0.36 -1.8
298,386 - GFF266 0.65 -1.8
298,484 + GFF266 0.79 -1.6
298,484 + GFF266 0.79 -0.8
298,484 + GFF266 0.79 -1.8
298,484 + GFF266 0.79 +0.6
298,484 + GFF266 0.79 -1.9
298,484 + GFF266 0.79 -2.4
298,485 - GFF266 0.80 -0.8
298,485 - GFF266 0.80 -1.6
298,485 - GFF266 0.80 -1.7
298,485 - GFF266 0.80 -0.8
298,485 - GFF266 0.80 -0.8
298,485 - GFF266 0.80 -2.8
298,485 - GFF266 0.80 -0.8
298,485 - GFF266 0.80 -1.4
298,485 - GFF266 0.80 -1.3
298,490 + GFF266 0.80 -2.9
298,490 + GFF266 0.80 -1.2
298,490 + GFF266 0.80 -1.2
298,491 - GFF266 0.81 -1.3
298,491 - GFF266 0.81 -1.8
298,668 + +0.8
298,669 - +0.2
298,669 - +0.0
298,669 - +0.1
298,669 - +0.4
298,669 - +0.1
298,669 - -1.6
298,669 - -1.5
298,687 - -1.2
298,687 - -0.6
298,896 + GFF267 0.38 -0.1
298,897 - GFF267 0.38 -0.8
299,035 + GFF267 0.71 -0.6
299,187 + -0.7
299,187 + +0.2
299,213 + +0.3
299,213 + +1.1
299,213 + -0.1
299,214 - -0.6
299,214 - +0.4
299,214 - -1.0
299,214 - +0.7
299,240 + -0.4

Or see this region's nucleotide sequence