Strain Fitness in Pseudomonas sp. DMC3 around GFF2575

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2574 and GFF2575 are separated by 782 nucleotidesGFF2575 and GFF2576 overlap by 4 nucleotides GFF2574 - Recombination-associated protein RdgC, at 366,030 to 366,950 GFF2574 GFF2575 - hypothetical protein, at 367,733 to 368,902 GFF2575 GFF2576 - hypothetical protein, at 368,899 to 370,710 GFF2576 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 366.827 kb on - strand, within GFF2574at 366.827 kb on - strand, within GFF2574at 366.827 kb on - strand, within GFF2574at 366.827 kb on - strand, within GFF2574at 366.827 kb on - strand, within GFF2574at 366.926 kb on - strandat 366.968 kb on + strandat 366.968 kb on + strandat 366.969 kb on - strandat 366.970 kb on + strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.971 kb on - strandat 366.985 kb on + strandat 366.985 kb on + strandat 366.985 kb on + strandat 366.985 kb on + strandat 366.986 kb on - strandat 367.020 kb on + strandat 367.020 kb on + strandat 367.021 kb on - strandat 367.363 kb on - strandat 367.375 kb on + strandat 367.375 kb on + strandat 367.375 kb on + strandat 367.375 kb on + strandat 367.376 kb on - strandat 367.376 kb on - strandat 367.376 kb on - strandat 367.480 kb on - strandat 367.779 kb on + strandat 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.980 kb on + strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 367.981 kb on - strand, within GFF2575at 368.104 kb on + strand, within GFF2575at 368.104 kb on + strand, within GFF2575at 368.104 kb on + strand, within GFF2575at 368.104 kb on + strand, within GFF2575at 368.104 kb on + strand, within GFF2575at 368.104 kb on + strand, within GFF2575at 368.105 kb on - strand, within GFF2575at 368.105 kb on - strand, within GFF2575at 368.105 kb on - strand, within GFF2575at 368.105 kb on - strand, within GFF2575at 368.107 kb on - strand, within GFF2575at 368.107 kb on - strand, within GFF2575at 368.169 kb on + strand, within GFF2575at 368.187 kb on + strand, within GFF2575at 368.187 kb on + strand, within GFF2575at 368.187 kb on + strand, within GFF2575at 368.187 kb on + strand, within GFF2575at 368.187 kb on + strand, within GFF2575at 368.188 kb on - strand, within GFF2575at 368.188 kb on - strand, within GFF2575at 368.188 kb on - strand, within GFF2575at 368.188 kb on - strand, within GFF2575at 368.227 kb on + strand, within GFF2575at 368.243 kb on + strand, within GFF2575at 368.243 kb on + strand, within GFF2575at 368.243 kb on + strand, within GFF2575at 368.243 kb on + strand, within GFF2575at 368.244 kb on - strand, within GFF2575at 368.244 kb on - strand, within GFF2575at 368.244 kb on - strand, within GFF2575at 368.244 kb on - strand, within GFF2575at 368.334 kb on + strand, within GFF2575at 368.335 kb on - strand, within GFF2575at 368.335 kb on - strand, within GFF2575at 368.335 kb on - strand, within GFF2575at 368.640 kb on + strand, within GFF2575at 368.932 kb on + strandat 369.131 kb on + strand, within GFF2576at 369.131 kb on + strand, within GFF2576at 369.131 kb on + strand, within GFF2576at 369.132 kb on - strand, within GFF2576at 369.132 kb on - strand, within GFF2576at 369.132 kb on - strand, within GFF2576at 369.173 kb on + strand, within GFF2576at 369.173 kb on + strand, within GFF2576at 369.174 kb on - strand, within GFF2576at 369.174 kb on - strand, within GFF2576at 369.243 kb on + strand, within GFF2576at 369.244 kb on - strand, within GFF2576at 369.244 kb on - strand, within GFF2576at 369.244 kb on - strand, within GFF2576at 369.244 kb on - strand, within GFF2576at 369.244 kb on - strand, within GFF2576at 369.245 kb on + strand, within GFF2576at 369.245 kb on + strand, within GFF2576at 369.245 kb on + strand, within GFF2576at 369.245 kb on + strand, within GFF2576at 369.245 kb on + strand, within GFF2576at 369.245 kb on + strand, within GFF2576at 369.246 kb on - strand, within GFF2576at 369.246 kb on - strand, within GFF2576at 369.329 kb on + strand, within GFF2576at 369.329 kb on + strand, within GFF2576at 369.330 kb on - strand, within GFF2576at 369.359 kb on + strand, within GFF2576at 369.359 kb on + strand, within GFF2576at 369.359 kb on + strand, within GFF2576at 369.359 kb on + strand, within GFF2576at 369.359 kb on + strand, within GFF2576at 369.360 kb on - strand, within GFF2576at 369.360 kb on - strand, within GFF2576at 369.360 kb on - strand, within GFF2576at 369.829 kb on - strand, within GFF2576

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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366,827 - GFF2574 0.87 +0.5
366,827 - GFF2574 0.87 -0.1
366,827 - GFF2574 0.87 +0.5
366,827 - GFF2574 0.87 -0.5
366,827 - GFF2574 0.87 -1.3
366,926 - -0.3
366,968 + -1.9
366,968 + +1.0
366,969 - +0.9
366,970 + -0.9
366,971 - +1.0
366,971 - +0.1
366,971 - -0.9
366,971 - +0.1
366,971 - +0.8
366,971 - -1.2
366,971 - -0.8
366,971 - -0.2
366,985 + +0.2
366,985 + +0.2
366,985 + -0.9
366,985 + -0.1
366,986 - -1.4
367,020 + +0.2
367,020 + +0.4
367,021 - +0.2
367,363 - -0.9
367,375 + -0.5
367,375 + -0.4
367,375 + -1.5
367,375 + -0.0
367,376 - +0.2
367,376 - +0.0
367,376 - +0.5
367,480 - -0.8
367,779 + -0.1
367,980 + GFF2575 0.21 +0.9
367,980 + GFF2575 0.21 -1.1
367,980 + GFF2575 0.21 +1.5
367,980 + GFF2575 0.21 +0.0
367,980 + GFF2575 0.21 -0.7
367,980 + GFF2575 0.21 -1.1
367,980 + GFF2575 0.21 -0.4
367,980 + GFF2575 0.21 -1.2
367,981 - GFF2575 0.21 -0.7
367,981 - GFF2575 0.21 +0.0
367,981 - GFF2575 0.21 +0.3
367,981 - GFF2575 0.21 -0.3
367,981 - GFF2575 0.21 -1.2
367,981 - GFF2575 0.21 -0.2
367,981 - GFF2575 0.21 -0.2
367,981 - GFF2575 0.21 +1.1
367,981 - GFF2575 0.21 +0.6
367,981 - GFF2575 0.21 +1.2
368,104 + GFF2575 0.32 -0.0
368,104 + GFF2575 0.32 -0.5
368,104 + GFF2575 0.32 -1.6
368,104 + GFF2575 0.32 +0.4
368,104 + GFF2575 0.32 +0.3
368,104 + GFF2575 0.32 -0.2
368,105 - GFF2575 0.32 -0.4
368,105 - GFF2575 0.32 +0.8
368,105 - GFF2575 0.32 -0.5
368,105 - GFF2575 0.32 -0.7
368,107 - GFF2575 0.32 -0.3
368,107 - GFF2575 0.32 -0.3
368,169 + GFF2575 0.37 -0.7
368,187 + GFF2575 0.39 +0.0
368,187 + GFF2575 0.39 +0.8
368,187 + GFF2575 0.39 +0.4
368,187 + GFF2575 0.39 -1.1
368,187 + GFF2575 0.39 +1.5
368,188 - GFF2575 0.39 -0.2
368,188 - GFF2575 0.39 -0.8
368,188 - GFF2575 0.39 +1.3
368,188 - GFF2575 0.39 -0.4
368,227 + GFF2575 0.42 -0.2
368,243 + GFF2575 0.44 +2.0
368,243 + GFF2575 0.44 -1.5
368,243 + GFF2575 0.44 +0.4
368,243 + GFF2575 0.44 +1.0
368,244 - GFF2575 0.44 -0.5
368,244 - GFF2575 0.44 -0.4
368,244 - GFF2575 0.44 +0.6
368,244 - GFF2575 0.44 +0.2
368,334 + GFF2575 0.51 +0.5
368,335 - GFF2575 0.51 +0.0
368,335 - GFF2575 0.51 -1.6
368,335 - GFF2575 0.51 -0.1
368,640 + GFF2575 0.78 +0.3
368,932 + -2.1
369,131 + GFF2576 0.13 -0.3
369,131 + GFF2576 0.13 +2.3
369,131 + GFF2576 0.13 -1.2
369,132 - GFF2576 0.13 -0.1
369,132 - GFF2576 0.13 +0.5
369,132 - GFF2576 0.13 -0.9
369,173 + GFF2576 0.15 +1.0
369,173 + GFF2576 0.15 -0.5
369,174 - GFF2576 0.15 -0.5
369,174 - GFF2576 0.15 -0.2
369,243 + GFF2576 0.19 -0.5
369,244 - GFF2576 0.19 -0.0
369,244 - GFF2576 0.19 -0.2
369,244 - GFF2576 0.19 -0.6
369,244 - GFF2576 0.19 +0.9
369,244 - GFF2576 0.19 -1.1
369,245 + GFF2576 0.19 +0.2
369,245 + GFF2576 0.19 +0.2
369,245 + GFF2576 0.19 -0.4
369,245 + GFF2576 0.19 +0.1
369,245 + GFF2576 0.19 +0.3
369,245 + GFF2576 0.19 -0.8
369,246 - GFF2576 0.19 -0.2
369,246 - GFF2576 0.19 -0.1
369,329 + GFF2576 0.24 -1.3
369,329 + GFF2576 0.24 +0.1
369,330 - GFF2576 0.24 -0.0
369,359 + GFF2576 0.25 +1.5
369,359 + GFF2576 0.25 +0.5
369,359 + GFF2576 0.25 -0.6
369,359 + GFF2576 0.25 -0.8
369,359 + GFF2576 0.25 +0.7
369,360 - GFF2576 0.25 -0.0
369,360 - GFF2576 0.25 -0.4
369,360 - GFF2576 0.25 +0.7
369,829 - GFF2576 0.51 +0.6

Or see this region's nucleotide sequence