Strain Fitness in Pseudomonas sp. DMC3 around GFF2538

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2536 and GFF2537 are separated by 237 nucleotidesGFF2537 and GFF2538 are separated by 8 nucleotidesGFF2538 and GFF2539 overlap by 1 nucleotides GFF2536 - hypothetical protein, at 326,407 to 328,032 GFF2536 GFF2537 - hypothetical protein, at 328,270 to 328,983 GFF2537 GFF2538 - Phosphoribosylglycinamide formyltransferase, at 328,992 to 329,642 GFF2538 GFF2539 - Phosphoribosylformylglycinamidine cyclo-ligase, at 329,642 to 330,700 GFF2539 Position (kb) 328 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1at 328.112 kb on - strandat 328.196 kb on + strandat 328.212 kb on - strandat 328.225 kb on + strandat 328.226 kb on - strandat 328.226 kb on - strandat 328.265 kb on - strandat 328.265 kb on - strandat 328.325 kb on + strandat 328.326 kb on - strandat 328.326 kb on - strandat 328.370 kb on + strand, within GFF2537at 328.371 kb on - strand, within GFF2537at 328.505 kb on + strand, within GFF2537at 328.505 kb on + strand, within GFF2537at 328.505 kb on + strand, within GFF2537at 328.506 kb on - strand, within GFF2537at 328.506 kb on - strand, within GFF2537at 328.506 kb on - strand, within GFF2537at 328.506 kb on - strand, within GFF2537at 328.506 kb on - strand, within GFF2537at 328.538 kb on + strand, within GFF2537at 328.539 kb on - strand, within GFF2537at 328.590 kb on - strand, within GFF2537at 328.590 kb on - strand, within GFF2537at 328.590 kb on - strand, within GFF2537at 328.590 kb on - strand, within GFF2537at 328.730 kb on + strand, within GFF2537at 328.731 kb on - strand, within GFF2537at 328.898 kb on + strand, within GFF2537at 328.898 kb on + strand, within GFF2537at 328.898 kb on + strand, within GFF2537at 328.898 kb on + strand, within GFF2537at 328.899 kb on - strand, within GFF2537at 328.899 kb on - strand, within GFF2537at 328.899 kb on - strand, within GFF2537at 328.899 kb on - strand, within GFF2537at 328.983 kb on + strandat 328.983 kb on + strandat 328.983 kb on + strandat 328.983 kb on + strandat 328.983 kb on + strandat 328.984 kb on - strandat 328.984 kb on - strandat 328.984 kb on - strandat 328.984 kb on - strandat 328.984 kb on - strandat 328.986 kb on + strandat 328.986 kb on + strandat 328.986 kb on + strandat 328.986 kb on + strandat 328.986 kb on + strandat 328.987 kb on - strandat 328.987 kb on - strandat 328.987 kb on - strandat 328.987 kb on - strandat 328.987 kb on - strandat 328.987 kb on - strandat 328.987 kb on - strandat 328.994 kb on - strandat 328.994 kb on - strandat 328.994 kb on - strandat 329.026 kb on - strandat 329.088 kb on + strand, within GFF2538at 329.089 kb on - strand, within GFF2538at 329.089 kb on - strand, within GFF2538at 329.102 kb on - strand, within GFF2538at 329.173 kb on - strand, within GFF2538at 329.181 kb on + strand, within GFF2538at 329.277 kb on + strand, within GFF2538at 329.278 kb on - strand, within GFF2538at 329.278 kb on - strand, within GFF2538at 329.287 kb on + strand, within GFF2538at 329.287 kb on + strand, within GFF2538at 329.287 kb on + strand, within GFF2538at 329.288 kb on - strand, within GFF2538at 329.288 kb on - strand, within GFF2538at 329.288 kb on - strand, within GFF2538at 329.379 kb on + strand, within GFF2538at 329.510 kb on - strand, within GFF2538at 329.594 kb on + strandat 329.774 kb on + strand, within GFF2539at 329.775 kb on - strand, within GFF2539at 329.775 kb on - strand, within GFF2539at 329.775 kb on - strand, within GFF2539at 329.807 kb on + strand, within GFF2539at 330.015 kb on + strand, within GFF2539at 330.015 kb on + strand, within GFF2539at 330.015 kb on + strand, within GFF2539at 330.016 kb on - strand, within GFF2539at 330.016 kb on - strand, within GFF2539at 330.016 kb on - strand, within GFF2539at 330.016 kb on - strand, within GFF2539at 330.240 kb on + strand, within GFF2539at 330.240 kb on + strand, within GFF2539at 330.241 kb on - strand, within GFF2539at 330.241 kb on - strand, within GFF2539at 330.255 kb on + strand, within GFF2539at 330.255 kb on + strand, within GFF2539at 330.255 kb on + strand, within GFF2539at 330.255 kb on + strand, within GFF2539at 330.255 kb on + strand, within GFF2539at 330.255 kb on + strand, within GFF2539at 330.256 kb on - strand, within GFF2539at 330.256 kb on - strand, within GFF2539at 330.256 kb on - strand, within GFF2539at 330.256 kb on - strand, within GFF2539at 330.375 kb on + strand, within GFF2539at 330.375 kb on + strand, within GFF2539at 330.376 kb on - strand, within GFF2539at 330.378 kb on + strand, within GFF2539at 330.538 kb on - strand, within GFF2539

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
328,112 - -0.2
328,196 + -0.3
328,212 - -1.3
328,225 + +0.4
328,226 - +0.1
328,226 - -1.1
328,265 - +0.4
328,265 - +0.5
328,325 + -1.1
328,326 - -0.5
328,326 - -0.6
328,370 + GFF2537 0.14 -1.1
328,371 - GFF2537 0.14 +0.5
328,505 + GFF2537 0.33 -0.8
328,505 + GFF2537 0.33 +0.1
328,505 + GFF2537 0.33 +0.2
328,506 - GFF2537 0.33 -2.1
328,506 - GFF2537 0.33 -0.8
328,506 - GFF2537 0.33 -1.1
328,506 - GFF2537 0.33 -1.5
328,506 - GFF2537 0.33 +0.9
328,538 + GFF2537 0.38 -0.3
328,539 - GFF2537 0.38 +0.0
328,590 - GFF2537 0.45 -0.1
328,590 - GFF2537 0.45 +0.5
328,590 - GFF2537 0.45 -1.4
328,590 - GFF2537 0.45 -0.8
328,730 + GFF2537 0.64 +0.7
328,731 - GFF2537 0.65 -0.4
328,898 + GFF2537 0.88 -0.6
328,898 + GFF2537 0.88 -0.2
328,898 + GFF2537 0.88 -0.3
328,898 + GFF2537 0.88 -1.9
328,899 - GFF2537 0.88 -1.2
328,899 - GFF2537 0.88 -0.6
328,899 - GFF2537 0.88 -0.6
328,899 - GFF2537 0.88 -0.1
328,983 + -1.4
328,983 + -0.1
328,983 + +0.4
328,983 + -0.2
328,983 + -0.1
328,984 - -0.2
328,984 - -0.2
328,984 - -2.0
328,984 - -0.5
328,984 - -0.2
328,986 + -1.3
328,986 + -0.4
328,986 + -0.2
328,986 + -0.3
328,986 + -1.1
328,987 - -0.1
328,987 - +0.3
328,987 - -1.4
328,987 - -0.4
328,987 - -0.3
328,987 - +0.3
328,987 - +0.3
328,994 - -0.6
328,994 - +0.0
328,994 - +0.2
329,026 - -1.0
329,088 + GFF2538 0.15 +0.2
329,089 - GFF2538 0.15 -3.2
329,089 - GFF2538 0.15 -1.9
329,102 - GFF2538 0.17 -1.2
329,173 - GFF2538 0.28 -2.2
329,181 + GFF2538 0.29 -2.7
329,277 + GFF2538 0.44 -0.8
329,278 - GFF2538 0.44 -0.8
329,278 - GFF2538 0.44 -2.2
329,287 + GFF2538 0.45 -0.8
329,287 + GFF2538 0.45 -0.5
329,287 + GFF2538 0.45 -2.8
329,288 - GFF2538 0.45 -1.8
329,288 - GFF2538 0.45 -0.4
329,288 - GFF2538 0.45 -1.6
329,379 + GFF2538 0.59 -1.4
329,510 - GFF2538 0.80 -0.3
329,594 + -0.6
329,774 + GFF2539 0.12 -1.1
329,775 - GFF2539 0.13 -0.5
329,775 - GFF2539 0.13 -0.8
329,775 - GFF2539 0.13 -1.8
329,807 + GFF2539 0.16 -0.1
330,015 + GFF2539 0.35 -2.6
330,015 + GFF2539 0.35 -1.8
330,015 + GFF2539 0.35 -1.1
330,016 - GFF2539 0.35 -2.1
330,016 - GFF2539 0.35 -1.6
330,016 - GFF2539 0.35 -3.4
330,016 - GFF2539 0.35 -0.8
330,240 + GFF2539 0.56 -2.6
330,240 + GFF2539 0.56 -1.8
330,241 - GFF2539 0.57 -1.9
330,241 - GFF2539 0.57 -1.9
330,255 + GFF2539 0.58 -1.6
330,255 + GFF2539 0.58 -1.6
330,255 + GFF2539 0.58 -2.8
330,255 + GFF2539 0.58 -1.9
330,255 + GFF2539 0.58 -0.6
330,255 + GFF2539 0.58 -1.3
330,256 - GFF2539 0.58 -2.1
330,256 - GFF2539 0.58 +0.5
330,256 - GFF2539 0.58 -1.3
330,256 - GFF2539 0.58 -1.8
330,375 + GFF2539 0.69 -2.6
330,375 + GFF2539 0.69 -2.7
330,376 - GFF2539 0.69 -1.9
330,378 + GFF2539 0.69 -1.1
330,538 - GFF2539 0.85 -1.6

Or see this region's nucleotide sequence