Strain Fitness in Pseudomonas sp. DMC3 around GFF246

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF245 and GFF246 are separated by 256 nucleotidesGFF246 and GFF247 are separated by 157 nucleotides GFF245 - Inner membrane transport protein YdhC, at 271,747 to 272,979 GFF245 GFF246 - Dihydroxy-acid dehydratase, at 273,236 to 275,077 GFF246 GFF247 - hypothetical protein, at 275,235 to 276,290 GFF247 Position (kb) 273 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 272.358 kb on - strand, within GFF245at 272.358 kb on - strand, within GFF245at 272.481 kb on - strand, within GFF245at 272.522 kb on - strand, within GFF245at 272.522 kb on - strand, within GFF245at 272.533 kb on + strand, within GFF245at 272.574 kb on + strand, within GFF245at 272.574 kb on + strand, within GFF245at 272.575 kb on - strand, within GFF245at 272.641 kb on + strand, within GFF245at 272.642 kb on - strand, within GFF245at 272.642 kb on - strand, within GFF245at 272.705 kb on + strand, within GFF245at 272.705 kb on + strand, within GFF245at 272.805 kb on + strand, within GFF245at 272.897 kb on + strandat 273.059 kb on - strandat 273.059 kb on - strandat 273.059 kb on - strandat 273.098 kb on + strandat 273.099 kb on - strandat 273.206 kb on + strandat 273.209 kb on + strandat 273.209 kb on + strandat 273.210 kb on - strandat 273.210 kb on - strandat 273.210 kb on - strandat 273.210 kb on - strandat 273.210 kb on - strandat 273.245 kb on + strandat 273.509 kb on + strand, within GFF246at 273.551 kb on + strand, within GFF246at 273.551 kb on + strand, within GFF246at 273.552 kb on - strand, within GFF246at 273.736 kb on - strand, within GFF246at 273.965 kb on + strand, within GFF246at 273.966 kb on - strand, within GFF246at 273.968 kb on + strand, within GFF246at 273.969 kb on - strand, within GFF246at 274.177 kb on + strand, within GFF246at 274.177 kb on + strand, within GFF246at 274.177 kb on + strand, within GFF246at 274.178 kb on - strand, within GFF246at 274.178 kb on - strand, within GFF246at 274.178 kb on - strand, within GFF246at 274.190 kb on + strand, within GFF246at 274.190 kb on + strand, within GFF246at 274.190 kb on + strand, within GFF246at 274.191 kb on - strand, within GFF246at 274.191 kb on - strand, within GFF246at 274.475 kb on + strand, within GFF246at 274.506 kb on - strand, within GFF246at 274.668 kb on - strand, within GFF246at 274.721 kb on + strand, within GFF246at 274.721 kb on + strand, within GFF246at 274.721 kb on + strand, within GFF246at 274.722 kb on - strand, within GFF246at 274.869 kb on + strand, within GFF246at 274.870 kb on - strand, within GFF246at 275.009 kb on + strandat 275.085 kb on - strandat 275.085 kb on - strandat 275.085 kb on - strandat 275.212 kb on + strandat 275.212 kb on + strandat 275.213 kb on - strandat 275.213 kb on - strandat 275.219 kb on + strandat 275.219 kb on + strandat 275.220 kb on - strandat 275.220 kb on - strandat 275.237 kb on - strandat 275.245 kb on - strandat 275.350 kb on + strand, within GFF247at 275.350 kb on + strand, within GFF247at 275.350 kb on + strand, within GFF247at 275.350 kb on + strand, within GFF247at 275.350 kb on + strand, within GFF247at 275.350 kb on + strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.351 kb on - strand, within GFF247at 275.419 kb on + strand, within GFF247at 275.419 kb on + strand, within GFF247at 275.420 kb on - strand, within GFF247at 275.420 kb on - strand, within GFF247at 275.420 kb on - strand, within GFF247at 275.420 kb on - strand, within GFF247at 275.478 kb on - strand, within GFF247at 275.479 kb on + strand, within GFF247at 275.479 kb on + strand, within GFF247at 275.480 kb on - strand, within GFF247at 275.480 kb on - strand, within GFF247at 275.480 kb on - strand, within GFF247at 275.534 kb on - strand, within GFF247at 275.572 kb on + strand, within GFF247at 275.675 kb on - strand, within GFF247at 275.675 kb on - strand, within GFF247at 275.680 kb on + strand, within GFF247at 275.680 kb on + strand, within GFF247at 275.681 kb on - strand, within GFF247at 275.703 kb on - strand, within GFF247at 275.737 kb on + strand, within GFF247at 275.737 kb on + strand, within GFF247at 275.738 kb on - strand, within GFF247at 275.738 kb on - strand, within GFF247at 275.768 kb on + strand, within GFF247at 275.770 kb on + strand, within GFF247at 275.770 kb on + strand, within GFF247at 275.770 kb on + strand, within GFF247at 275.771 kb on - strand, within GFF247at 275.842 kb on + strand, within GFF247at 275.842 kb on + strand, within GFF247at 275.842 kb on + strand, within GFF247at 275.842 kb on + strand, within GFF247at 275.887 kb on + strand, within GFF247at 275.887 kb on + strand, within GFF247at 275.888 kb on - strand, within GFF247at 275.977 kb on + strand, within GFF247at 275.977 kb on + strand, within GFF247at 275.977 kb on + strand, within GFF247at 275.977 kb on + strand, within GFF247at 275.977 kb on + strand, within GFF247at 275.978 kb on - strand, within GFF247at 275.978 kb on - strand, within GFF247at 275.978 kb on - strand, within GFF247at 275.981 kb on - strand, within GFF247at 275.981 kb on - strand, within GFF247

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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272,358 - GFF245 0.50 +0.2
272,358 - GFF245 0.50 -0.1
272,481 - GFF245 0.60 +1.9
272,522 - GFF245 0.63 -0.1
272,522 - GFF245 0.63 +0.2
272,533 + GFF245 0.64 +0.6
272,574 + GFF245 0.67 -0.2
272,574 + GFF245 0.67 -0.5
272,575 - GFF245 0.67 +0.5
272,641 + GFF245 0.73 +0.4
272,642 - GFF245 0.73 +0.8
272,642 - GFF245 0.73 -0.1
272,705 + GFF245 0.78 +0.6
272,705 + GFF245 0.78 +0.3
272,805 + GFF245 0.86 -1.2
272,897 + +0.2
273,059 - -1.6
273,059 - -0.8
273,059 - -1.3
273,098 + -0.5
273,099 - -0.2
273,206 + +1.5
273,209 + +0.8
273,209 + +0.8
273,210 - -1.9
273,210 - -2.6
273,210 - -2.6
273,210 - -2.3
273,210 - -3.4
273,245 + -2.0
273,509 + GFF246 0.15 -2.6
273,551 + GFF246 0.17 -2.7
273,551 + GFF246 0.17 -1.4
273,552 - GFF246 0.17 -0.8
273,736 - GFF246 0.27 -2.5
273,965 + GFF246 0.40 -3.5
273,966 - GFF246 0.40 -1.7
273,968 + GFF246 0.40 -2.1
273,969 - GFF246 0.40 -0.8
274,177 + GFF246 0.51 -3.5
274,177 + GFF246 0.51 -2.0
274,177 + GFF246 0.51 -2.8
274,178 - GFF246 0.51 -1.4
274,178 - GFF246 0.51 -1.9
274,178 - GFF246 0.51 -2.6
274,190 + GFF246 0.52 -3.4
274,190 + GFF246 0.52 -2.8
274,190 + GFF246 0.52 -3.0
274,191 - GFF246 0.52 -3.6
274,191 - GFF246 0.52 -2.1
274,475 + GFF246 0.67 -2.6
274,506 - GFF246 0.69 -3.1
274,668 - GFF246 0.78 -1.6
274,721 + GFF246 0.81 -1.2
274,721 + GFF246 0.81 -3.4
274,721 + GFF246 0.81 -2.8
274,722 - GFF246 0.81 -2.9
274,869 + GFF246 0.89 +0.2
274,870 - GFF246 0.89 -2.9
275,009 + -3.1
275,085 - +0.2
275,085 - +0.8
275,085 - -0.3
275,212 + +0.6
275,212 + +0.1
275,213 - -0.3
275,213 - -1.1
275,219 + -0.3
275,219 + -1.4
275,220 - -0.7
275,220 - -2.5
275,237 - +0.2
275,245 - +1.0
275,350 + GFF247 0.11 -0.7
275,350 + GFF247 0.11 -0.8
275,350 + GFF247 0.11 +0.4
275,350 + GFF247 0.11 +0.3
275,350 + GFF247 0.11 -1.4
275,350 + GFF247 0.11 -0.4
275,351 - GFF247 0.11 -1.2
275,351 - GFF247 0.11 +0.8
275,351 - GFF247 0.11 -0.4
275,351 - GFF247 0.11 +0.6
275,351 - GFF247 0.11 +0.8
275,351 - GFF247 0.11 +1.2
275,351 - GFF247 0.11 -0.3
275,419 + GFF247 0.17 -0.8
275,419 + GFF247 0.17 -3.0
275,420 - GFF247 0.18 +1.3
275,420 - GFF247 0.18 -1.2
275,420 - GFF247 0.18 -0.8
275,420 - GFF247 0.18 -1.0
275,478 - GFF247 0.23 +0.5
275,479 + GFF247 0.23 -0.8
275,479 + GFF247 0.23 -0.6
275,480 - GFF247 0.23 +1.3
275,480 - GFF247 0.23 +1.0
275,480 - GFF247 0.23 -0.9
275,534 - GFF247 0.28 -0.2
275,572 + GFF247 0.32 +0.1
275,675 - GFF247 0.42 +0.2
275,675 - GFF247 0.42 +0.3
275,680 + GFF247 0.42 +0.7
275,680 + GFF247 0.42 +0.3
275,681 - GFF247 0.42 -0.2
275,703 - GFF247 0.44 +0.2
275,737 + GFF247 0.48 -0.1
275,737 + GFF247 0.48 +0.3
275,738 - GFF247 0.48 -0.6
275,738 - GFF247 0.48 +0.4
275,768 + GFF247 0.50 -0.8
275,770 + GFF247 0.51 +0.4
275,770 + GFF247 0.51 +0.8
275,770 + GFF247 0.51 -0.5
275,771 - GFF247 0.51 +0.3
275,842 + GFF247 0.57 -1.2
275,842 + GFF247 0.57 +0.9
275,842 + GFF247 0.57 +1.1
275,842 + GFF247 0.57 -0.7
275,887 + GFF247 0.62 +0.2
275,887 + GFF247 0.62 -0.1
275,888 - GFF247 0.62 +0.9
275,977 + GFF247 0.70 -0.6
275,977 + GFF247 0.70 +0.7
275,977 + GFF247 0.70 +0.3
275,977 + GFF247 0.70 +1.1
275,977 + GFF247 0.70 +1.6
275,978 - GFF247 0.70 +0.3
275,978 - GFF247 0.70 -0.6
275,978 - GFF247 0.70 +0.4
275,981 - GFF247 0.71 -0.2
275,981 - GFF247 0.71 -0.7

Or see this region's nucleotide sequence