Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2355 and GFF2356 are separated by 50 nucleotides GFF2356 and GFF2357 are separated by 88 nucleotides GFF2357 and GFF2358 are separated by 172 nucleotides
GFF2355 - ATP-dependent RNA helicase RhlE, at 131,924 to 133,264
GFF2355
GFF2356 - hypothetical protein, at 133,315 to 133,590
GFF2356
GFF2357 - hypothetical protein, at 133,679 to 134,413
GFF2357
GFF2358 - hypothetical protein, at 134,586 to 134,978
GFF2358
Position (kb) 133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.055 kb on + strand, within GFF2355 at 133.262 kb on + strand at 133.262 kb on + strand at 133.263 kb on - strand at 133.263 kb on - strand at 133.524 kb on + strand, within GFF2356 at 133.524 kb on + strand, within GFF2356 at 133.719 kb on + strand at 133.788 kb on + strand, within GFF2357 at 133.789 kb on - strand, within GFF2357 at 133.794 kb on + strand, within GFF2357 at 133.794 kb on + strand, within GFF2357 at 133.794 kb on + strand, within GFF2357 at 133.795 kb on - strand, within GFF2357 at 133.795 kb on - strand, within GFF2357 at 133.795 kb on - strand, within GFF2357 at 133.827 kb on + strand, within GFF2357 at 133.827 kb on + strand, within GFF2357 at 133.828 kb on - strand, within GFF2357 at 133.828 kb on - strand, within GFF2357 at 133.828 kb on - strand, within GFF2357 at 133.828 kb on - strand, within GFF2357 at 133.837 kb on - strand, within GFF2357 at 133.837 kb on - strand, within GFF2357 at 133.837 kb on - strand, within GFF2357 at 133.837 kb on - strand, within GFF2357 at 133.837 kb on - strand, within GFF2357 at 133.837 kb on - strand, within GFF2357 at 133.921 kb on - strand, within GFF2357 at 133.921 kb on - strand, within GFF2357 at 133.926 kb on + strand, within GFF2357 at 133.926 kb on + strand, within GFF2357 at 133.926 kb on + strand, within GFF2357 at 133.926 kb on + strand, within GFF2357 at 133.926 kb on + strand, within GFF2357 at 133.926 kb on + strand, within GFF2357 at 133.927 kb on - strand, within GFF2357 at 133.927 kb on - strand, within GFF2357 at 133.927 kb on - strand, within GFF2357 at 133.927 kb on - strand, within GFF2357 at 133.981 kb on - strand, within GFF2357 at 134.190 kb on + strand, within GFF2357 at 134.190 kb on + strand, within GFF2357 at 134.191 kb on - strand, within GFF2357 at 134.191 kb on - strand, within GFF2357 at 134.191 kb on - strand, within GFF2357 at 134.191 kb on - strand, within GFF2357 at 134.262 kb on + strand, within GFF2357 at 134.263 kb on - strand, within GFF2357 at 134.404 kb on + strand at 134.405 kb on - strand at 134.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 133,055 + GFF2355 0.84 -0.8 133,262 + -0.4 133,262 + +2.6 133,263 - -1.5 133,263 - +0.1 133,524 + GFF2356 0.76 -1.0 133,524 + GFF2356 0.76 -1.3 133,719 + -0.1 133,788 + GFF2357 0.15 +0.3 133,789 - GFF2357 0.15 +0.4 133,794 + GFF2357 0.16 -0.5 133,794 + GFF2357 0.16 -1.4 133,794 + GFF2357 0.16 +1.2 133,795 - GFF2357 0.16 -1.5 133,795 - GFF2357 0.16 +0.4 133,795 - GFF2357 0.16 -1.1 133,827 + GFF2357 0.20 -0.1 133,827 + GFF2357 0.20 +1.4 133,828 - GFF2357 0.20 -0.2 133,828 - GFF2357 0.20 -0.1 133,828 - GFF2357 0.20 -2.0 133,828 - GFF2357 0.20 -0.7 133,837 - GFF2357 0.21 -0.3 133,837 - GFF2357 0.21 -0.3 133,837 - GFF2357 0.21 -0.2 133,837 - GFF2357 0.21 -1.2 133,837 - GFF2357 0.21 -0.1 133,837 - GFF2357 0.21 -0.2 133,921 - GFF2357 0.33 -0.8 133,921 - GFF2357 0.33 +0.5 133,926 + GFF2357 0.34 +0.5 133,926 + GFF2357 0.34 -2.0 133,926 + GFF2357 0.34 +0.6 133,926 + GFF2357 0.34 -1.1 133,926 + GFF2357 0.34 -0.3 133,926 + GFF2357 0.34 +1.2 133,927 - GFF2357 0.34 -0.2 133,927 - GFF2357 0.34 -0.5 133,927 - GFF2357 0.34 -0.4 133,927 - GFF2357 0.34 -0.6 133,981 - GFF2357 0.41 +0.4 134,190 + GFF2357 0.70 +0.6 134,190 + GFF2357 0.70 -0.0 134,191 - GFF2357 0.70 +0.0 134,191 - GFF2357 0.70 -0.4 134,191 - GFF2357 0.70 -0.1 134,191 - GFF2357 0.70 +0.0 134,262 + GFF2357 0.79 +0.5 134,263 - GFF2357 0.79 +1.6 134,404 + -0.4 134,405 - +0.8 134,405 - -0.4
Or see this region's nucleotide sequence