Strain Fitness in Pseudomonas sp. DMC3 around GFF213

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF212 and GFF213 are separated by 7 nucleotidesGFF213 and GFF214 are separated by 26 nucleotidesGFF214 and GFF215 overlap by 4 nucleotides GFF212 - Homoserine O-succinyltransferase, at 241,685 to 242,824 GFF212 GFF213 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 242,832 to 243,452 GFF213 GFF214 - hypothetical protein, at 243,479 to 243,913 GFF214 GFF215 - dITP/XTP pyrophosphatase, at 243,910 to 244,506 GFF215 Position (kb) 242 243 244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 241.887 kb on - strand, within GFF212at 242.023 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.448 kb on - strand, within GFF212at 242.448 kb on - strand, within GFF212at 242.534 kb on + strand, within GFF212at 242.534 kb on + strand, within GFF212at 242.534 kb on + strand, within GFF212at 242.535 kb on - strand, within GFF212at 242.535 kb on - strand, within GFF212at 242.561 kb on + strand, within GFF212at 242.561 kb on + strand, within GFF212at 242.562 kb on - strand, within GFF212at 242.723 kb on + strandat 242.724 kb on - strandat 242.780 kb on + strandat 242.780 kb on + strandat 242.781 kb on - strandat 242.781 kb on - strandat 242.801 kb on + strandat 242.801 kb on + strandat 242.802 kb on - strandat 242.802 kb on - strandat 242.953 kb on - strand, within GFF213at 243.237 kb on + strand, within GFF213at 243.238 kb on - strand, within GFF213at 243.247 kb on - strand, within GFF213at 243.247 kb on - strand, within GFF213at 243.368 kb on + strand, within GFF213at 243.369 kb on - strand, within GFF213at 243.369 kb on - strand, within GFF213at 243.373 kb on + strand, within GFF213at 243.373 kb on + strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.380 kb on + strand, within GFF213at 243.381 kb on - strand, within GFF213at 243.388 kb on + strand, within GFF213at 243.388 kb on + strand, within GFF213at 243.405 kb on + strandat 243.405 kb on + strandat 243.405 kb on + strandat 243.502 kb on - strandat 243.502 kb on - strandat 243.590 kb on + strand, within GFF214at 243.590 kb on + strand, within GFF214at 243.590 kb on + strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.794 kb on + strand, within GFF214at 243.794 kb on + strand, within GFF214at 243.794 kb on + strand, within GFF214at 243.795 kb on - strand, within GFF214at 243.795 kb on - strand, within GFF214at 243.795 kb on - strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.798 kb on - strand, within GFF214at 243.798 kb on - strand, within GFF214at 243.809 kb on + strand, within GFF214at 243.809 kb on + strand, within GFF214at 244.165 kb on + strand, within GFF215at 244.165 kb on + strand, within GFF215at 244.165 kb on + strand, within GFF215at 244.166 kb on - strand, within GFF215at 244.166 kb on - strand, within GFF215at 244.166 kb on - strand, within GFF215at 244.166 kb on - strand, within GFF215at 244.166 kb on - strand, within GFF215at 244.166 kb on - strand, within GFF215at 244.177 kb on + strand, within GFF215at 244.275 kb on - strand, within GFF215at 244.275 kb on - strand, within GFF215

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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241,887 - GFF212 0.18 -2.1
242,023 + GFF212 0.30 -3.0
242,384 + GFF212 0.61 -3.5
242,384 + GFF212 0.61 -1.1
242,384 + GFF212 0.61 -2.0
242,384 + GFF212 0.61 -1.8
242,385 - GFF212 0.61 -2.7
242,385 - GFF212 0.61 -3.5
242,385 - GFF212 0.61 -3.7
242,385 - GFF212 0.61 -2.2
242,385 - GFF212 0.61 -0.6
242,448 - GFF212 0.67 -3.1
242,448 - GFF212 0.67 -0.6
242,534 + GFF212 0.74 -3.0
242,534 + GFF212 0.74 -2.9
242,534 + GFF212 0.74 -3.5
242,535 - GFF212 0.75 -2.0
242,535 - GFF212 0.75 -0.6
242,561 + GFF212 0.77 -1.6
242,561 + GFF212 0.77 -4.0
242,562 - GFF212 0.77 -3.2
242,723 + -4.2
242,724 - -1.4
242,780 + -2.3
242,780 + -4.0
242,781 - -1.6
242,781 - -3.0
242,801 + -0.8
242,801 + -1.3
242,802 - -3.3
242,802 - -1.4
242,953 - GFF213 0.19 -0.3
243,237 + GFF213 0.65 -3.1
243,238 - GFF213 0.65 -0.8
243,247 - GFF213 0.67 -1.8
243,247 - GFF213 0.67 -1.4
243,368 + GFF213 0.86 -0.8
243,369 - GFF213 0.86 -3.3
243,369 - GFF213 0.86 -1.7
243,373 + GFF213 0.87 -0.6
243,373 + GFF213 0.87 -1.9
243,374 - GFF213 0.87 -2.3
243,374 - GFF213 0.87 -2.1
243,374 - GFF213 0.87 -3.7
243,374 - GFF213 0.87 -1.3
243,374 - GFF213 0.87 -3.3
243,380 + GFF213 0.88 -3.3
243,381 - GFF213 0.88 -1.2
243,388 + GFF213 0.90 -1.8
243,388 + GFF213 0.90 -3.0
243,405 + -3.5
243,405 + -0.6
243,405 + -2.8
243,502 - +0.3
243,502 - -0.3
243,590 + GFF214 0.26 +0.9
243,590 + GFF214 0.26 +0.2
243,590 + GFF214 0.26 +0.3
243,591 - GFF214 0.26 -0.4
243,591 - GFF214 0.26 -0.3
243,591 - GFF214 0.26 -0.2
243,591 - GFF214 0.26 +1.3
243,794 + GFF214 0.72 -0.1
243,794 + GFF214 0.72 -0.1
243,794 + GFF214 0.72 +0.0
243,795 - GFF214 0.73 -1.3
243,795 - GFF214 0.73 -0.3
243,795 - GFF214 0.73 -0.1
243,797 + GFF214 0.73 +0.5
243,797 + GFF214 0.73 -1.6
243,797 + GFF214 0.73 -0.2
243,797 + GFF214 0.73 -0.1
243,797 + GFF214 0.73 -0.0
243,797 + GFF214 0.73 +0.2
243,798 - GFF214 0.73 -1.2
243,798 - GFF214 0.73 +0.5
243,809 + GFF214 0.76 -0.1
243,809 + GFF214 0.76 +0.4
244,165 + GFF215 0.43 -0.0
244,165 + GFF215 0.43 +0.6
244,165 + GFF215 0.43 +0.5
244,166 - GFF215 0.43 -0.1
244,166 - GFF215 0.43 -0.0
244,166 - GFF215 0.43 -0.4
244,166 - GFF215 0.43 +0.3
244,166 - GFF215 0.43 +0.5
244,166 - GFF215 0.43 -0.7
244,177 + GFF215 0.45 -0.8
244,275 - GFF215 0.61 +1.0
244,275 - GFF215 0.61 +0.1

Or see this region's nucleotide sequence