Strain Fitness in Pseudomonas sp. DMC3 around GFF2067

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2066 and GFF2067 are separated by 11 nucleotidesGFF2067 and GFF2068 are separated by 76 nucleotides GFF2066 - Lipid-A-disaccharide synthase, at 312,607 to 313,737 GFF2066 GFF2067 - Ribonuclease HII, at 313,749 to 314,375 GFF2067 GFF2068 - DNA polymerase III subunit alpha, at 314,452 to 317,973 GFF2068 Position (kb) 313 314 315Strain fitness (log2 ratio) -1 0 1at 313.935 kb on + strand, within GFF2067at 313.970 kb on + strand, within GFF2067at 313.970 kb on + strand, within GFF2067at 313.971 kb on - strand, within GFF2067at 313.971 kb on - strand, within GFF2067at 314.224 kb on - strand, within GFF2067at 314.333 kb on - strandat 314.343 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.393 kb on + strandat 314.430 kb on + strandat 314.430 kb on + strandat 314.430 kb on + strandat 314.434 kb on + strandat 314.434 kb on + strandat 314.434 kb on + strandat 314.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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313,935 + GFF2067 0.30 +0.5
313,970 + GFF2067 0.35 +1.4
313,970 + GFF2067 0.35 -0.0
313,971 - GFF2067 0.35 +0.6
313,971 - GFF2067 0.35 +0.7
314,224 - GFF2067 0.76 +1.0
314,333 - -0.3
314,343 + +0.7
314,373 + -0.7
314,373 + -0.2
314,393 + -0.6
314,430 + -0.2
314,430 + -0.6
314,430 + +0.4
314,434 + +0.5
314,434 + -0.9
314,434 + +0.0
314,434 + -0.0

Or see this region's nucleotide sequence