Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2050 and GFF2051 are separated by 223 nucleotides GFF2051 and GFF2052 are separated by 40 nucleotides
GFF2050 - LL-diaminopimelate aminotransferase, at 294,434 to 295,633
GFF2050
GFF2051 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 295,857 to 298,559
GFF2051
GFF2052 - Methionine aminopeptidase, at 298,600 to 299,382
GFF2052
Position (kb) 295
296
297
298
299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 294.997 kb on - strand, within GFF2050 at 295.203 kb on + strand, within GFF2050 at 295.204 kb on - strand, within GFF2050 at 295.204 kb on - strand, within GFF2050 at 295.347 kb on - strand, within GFF2050 at 295.453 kb on - strand, within GFF2050 at 295.453 kb on - strand, within GFF2050 at 295.565 kb on - strand at 295.646 kb on + strand at 295.647 kb on - strand at 295.744 kb on + strand at 295.744 kb on + strand at 295.745 kb on - strand at 295.756 kb on - strand at 295.756 kb on - strand at 295.783 kb on - strand at 295.783 kb on - strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.807 kb on + strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.808 kb on - strand at 295.811 kb on + strand at 295.812 kb on - strand at 295.862 kb on + strand at 295.862 kb on + strand at 295.863 kb on - strand at 296.314 kb on + strand, within GFF2051 at 296.315 kb on - strand, within GFF2051 at 296.315 kb on - strand, within GFF2051 at 296.315 kb on - strand, within GFF2051 at 296.541 kb on + strand, within GFF2051 at 296.728 kb on + strand, within GFF2051 at 296.809 kb on + strand, within GFF2051 at 296.809 kb on + strand, within GFF2051 at 296.809 kb on + strand, within GFF2051 at 296.809 kb on + strand, within GFF2051 at 296.810 kb on - strand, within GFF2051 at 296.810 kb on - strand, within GFF2051 at 296.815 kb on + strand, within GFF2051 at 296.816 kb on - strand, within GFF2051 at 297.043 kb on + strand, within GFF2051 at 297.058 kb on + strand, within GFF2051 at 297.058 kb on + strand, within GFF2051 at 297.058 kb on + strand, within GFF2051 at 297.059 kb on - strand, within GFF2051 at 297.059 kb on - strand, within GFF2051 at 297.059 kb on - strand, within GFF2051 at 297.059 kb on - strand, within GFF2051 at 297.131 kb on - strand, within GFF2051 at 297.131 kb on - strand, within GFF2051 at 297.182 kb on + strand, within GFF2051 at 297.183 kb on - strand, within GFF2051 at 297.183 kb on - strand, within GFF2051 at 297.183 kb on - strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.184 kb on + strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.185 kb on - strand, within GFF2051 at 297.221 kb on + strand, within GFF2051 at 297.242 kb on - strand, within GFF2051 at 297.242 kb on - strand, within GFF2051 at 297.502 kb on + strand, within GFF2051 at 297.503 kb on - strand, within GFF2051 at 297.503 kb on - strand, within GFF2051 at 297.503 kb on - strand, within GFF2051 at 297.947 kb on - strand, within GFF2051 at 298.277 kb on - strand, within GFF2051 at 298.487 kb on + strand at 298.576 kb on + strand at 298.576 kb on + strand at 298.576 kb on + strand at 298.576 kb on + strand at 298.576 kb on + strand at 298.577 kb on - strand at 298.577 kb on - strand at 298.577 kb on - strand at 298.577 kb on - strand at 298.577 kb on - strand at 298.578 kb on + strand at 298.578 kb on + strand at 298.579 kb on - strand at 298.579 kb on - strand at 298.579 kb on - strand at 298.985 kb on + strand, within GFF2052 at 298.985 kb on + strand, within GFF2052 at 298.985 kb on + strand, within GFF2052 at 298.985 kb on + strand, within GFF2052 at 298.985 kb on + strand, within GFF2052 at 298.986 kb on - strand, within GFF2052 at 298.986 kb on - strand, within GFF2052 at 298.986 kb on - strand, within GFF2052 at 298.986 kb on - strand, within GFF2052 at 299.061 kb on + strand, within GFF2052 at 299.198 kb on + strand, within GFF2052 at 299.198 kb on + strand, within GFF2052 at 299.199 kb on - strand, within GFF2052 at 299.199 kb on - strand, within GFF2052 at 299.240 kb on + strand, within GFF2052 at 299.240 kb on + strand, within GFF2052 at 299.240 kb on + strand, within GFF2052 at 299.240 kb on + strand, within GFF2052 at 299.240 kb on + strand, within GFF2052 at 299.240 kb on + strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.241 kb on - strand, within GFF2052 at 299.382 kb on + strand at 299.382 kb on + strand at 299.411 kb on + strand at 299.437 kb on + strand at 299.438 kb on - strand at 299.510 kb on + strand at 299.510 kb on + strand at 299.510 kb on + strand at 299.510 kb on + strand at 299.510 kb on + strand at 299.510 kb on + strand at 299.510 kb on + strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.511 kb on - strand at 299.514 kb on + strand at 299.514 kb on + strand at 299.515 kb on - strand at 299.515 kb on - strand at 299.515 kb on - strand at 299.515 kb on - strand at 299.515 kb on - strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.516 kb on + strand at 299.517 kb on - strand at 299.517 kb on - strand at 299.517 kb on - strand at 299.517 kb on - strand at 299.517 kb on - strand at 299.517 kb on - strand at 299.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 294,997 - GFF2050 0.47 -0.2 295,203 + GFF2050 0.64 -0.1 295,204 - GFF2050 0.64 -1.4 295,204 - GFF2050 0.64 -1.7 295,347 - GFF2050 0.76 -0.3 295,453 - GFF2050 0.85 -0.1 295,453 - GFF2050 0.85 -0.7 295,565 - -1.2 295,646 + +0.4 295,647 - -1.2 295,744 + -0.3 295,744 + -2.4 295,745 - -0.1 295,756 - -0.4 295,756 - -0.7 295,783 - +0.1 295,783 - -0.4 295,807 + -0.4 295,807 + +0.1 295,807 + +0.4 295,807 + -1.1 295,807 + -1.2 295,807 + -0.5 295,807 + +0.3 295,807 + +0.1 295,807 + -0.4 295,808 - -0.7 295,808 - -0.2 295,808 - +0.9 295,808 - -0.7 295,808 - -1.7 295,808 - -0.7 295,808 - +0.2 295,808 - +0.9 295,808 - +1.2 295,808 - +0.1 295,808 - +0.1 295,808 - -0.2 295,808 - -0.3 295,808 - -0.3 295,808 - -0.3 295,808 - -0.6 295,811 + -0.8 295,812 - +0.3 295,862 + +0.2 295,862 + +0.6 295,863 - +1.0 296,314 + GFF2051 0.17 -0.4 296,315 - GFF2051 0.17 -0.4 296,315 - GFF2051 0.17 -0.4 296,315 - GFF2051 0.17 -0.9 296,541 + GFF2051 0.25 -1.2 296,728 + GFF2051 0.32 -2.4 296,809 + GFF2051 0.35 -2.4 296,809 + GFF2051 0.35 -3.5 296,809 + GFF2051 0.35 -3.4 296,809 + GFF2051 0.35 -2.2 296,810 - GFF2051 0.35 -2.5 296,810 - GFF2051 0.35 -3.3 296,815 + GFF2051 0.35 -2.7 296,816 - GFF2051 0.35 -3.3 297,043 + GFF2051 0.44 -3.1 297,058 + GFF2051 0.44 -2.1 297,058 + GFF2051 0.44 -3.6 297,058 + GFF2051 0.44 -3.4 297,059 - GFF2051 0.44 -1.8 297,059 - GFF2051 0.44 -0.7 297,059 - GFF2051 0.44 -2.6 297,059 - GFF2051 0.44 -0.9 297,131 - GFF2051 0.47 -2.5 297,131 - GFF2051 0.47 -3.1 297,182 + GFF2051 0.49 -1.2 297,183 - GFF2051 0.49 -3.0 297,183 - GFF2051 0.49 -3.1 297,183 - GFF2051 0.49 -3.1 297,184 + GFF2051 0.49 -1.9 297,184 + GFF2051 0.49 -1.8 297,184 + GFF2051 0.49 -2.3 297,184 + GFF2051 0.49 -2.0 297,184 + GFF2051 0.49 -1.1 297,184 + GFF2051 0.49 -2.3 297,184 + GFF2051 0.49 -2.8 297,185 - GFF2051 0.49 -0.7 297,185 - GFF2051 0.49 -2.7 297,185 - GFF2051 0.49 -2.4 297,185 - GFF2051 0.49 -3.9 297,185 - GFF2051 0.49 -1.9 297,185 - GFF2051 0.49 -4.3 297,185 - GFF2051 0.49 -3.6 297,221 + GFF2051 0.50 -3.2 297,242 - GFF2051 0.51 -0.4 297,242 - GFF2051 0.51 -1.7 297,502 + GFF2051 0.61 -1.5 297,503 - GFF2051 0.61 -2.3 297,503 - GFF2051 0.61 -2.3 297,503 - GFF2051 0.61 -3.5 297,947 - GFF2051 0.77 -0.7 298,277 - GFF2051 0.90 -0.9 298,487 + -2.1 298,576 + +0.2 298,576 + +0.3 298,576 + -0.3 298,576 + -1.7 298,576 + -0.4 298,577 - +0.1 298,577 - +1.4 298,577 - +0.1 298,577 - +0.1 298,577 - +0.7 298,578 + +1.0 298,578 + -0.6 298,579 - +1.1 298,579 - +0.3 298,579 - -0.8 298,985 + GFF2052 0.49 -0.6 298,985 + GFF2052 0.49 -0.8 298,985 + GFF2052 0.49 +0.8 298,985 + GFF2052 0.49 -0.0 298,985 + GFF2052 0.49 -1.7 298,986 - GFF2052 0.49 -1.8 298,986 - GFF2052 0.49 +0.1 298,986 - GFF2052 0.49 +0.4 298,986 - GFF2052 0.49 -0.1 299,061 + GFF2052 0.59 -0.5 299,198 + GFF2052 0.76 -1.9 299,198 + GFF2052 0.76 -0.4 299,199 - GFF2052 0.77 -0.7 299,199 - GFF2052 0.77 -0.6 299,240 + GFF2052 0.82 -1.4 299,240 + GFF2052 0.82 -2.1 299,240 + GFF2052 0.82 -2.4 299,240 + GFF2052 0.82 -1.4 299,240 + GFF2052 0.82 -0.8 299,240 + GFF2052 0.82 -0.8 299,241 - GFF2052 0.82 +0.5 299,241 - GFF2052 0.82 -0.4 299,241 - GFF2052 0.82 -0.2 299,241 - GFF2052 0.82 -0.4 299,241 - GFF2052 0.82 -0.6 299,241 - GFF2052 0.82 +1.2 299,241 - GFF2052 0.82 +0.9 299,241 - GFF2052 0.82 -0.1 299,241 - GFF2052 0.82 -0.3 299,382 + -2.7 299,382 + -1.2 299,411 + -0.7 299,437 + +0.1 299,438 - +0.5 299,510 + +0.5 299,510 + +0.5 299,510 + -0.1 299,510 + -1.5 299,510 + -0.1 299,510 + +0.8 299,510 + +0.6 299,511 - +0.2 299,511 - -0.1 299,511 - -0.9 299,511 - -0.2 299,511 - -0.3 299,511 - +0.6 299,511 - -0.3 299,511 - +1.5 299,514 + -0.2 299,514 + +0.7 299,515 - -1.8 299,515 - +0.7 299,515 - +0.9 299,515 - +0.7 299,515 - -0.0 299,516 + +0.3 299,516 + -0.4 299,516 + -0.9 299,516 + +1.5 299,516 + -0.8 299,516 + +0.2 299,516 + +0.1 299,516 + -0.3 299,516 + -0.1 299,516 + +1.4 299,516 + +0.4 299,517 - -1.4 299,517 - +0.4 299,517 - +2.0 299,517 - +1.0 299,517 - +1.2 299,517 - -1.7 299,517 - +0.5
Or see this region's nucleotide sequence