Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2038 and GFF2039 are separated by 113 nucleotides GFF2039 and GFF2040 are separated by 83 nucleotides GFF2040 and GFF2041 are separated by 75 nucleotides GFF2041 and GFF2042 overlap by 1 nucleotides
GFF2038 - Glycerol-3-phosphate acyltransferase, at 279,909 to 282,533
GFF2038
GFF2039 - Major cold shock protein CspA, at 282,647 to 282,856
GFF2039
GFF2040 - hypothetical protein, at 282,940 to 283,317
GFF2040
GFF2041 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 283,393 to 284,202
GFF2041
GFF2042 - Succinyl-diaminopimelate desuccinylase, at 284,202 to 285,353
GFF2042
Position (kb) 282
283
284 Strain fitness (log2 ratio) -2
-1
0
1 at 282.154 kb on + strand, within GFF2038 at 282.253 kb on + strand, within GFF2038 at 282.280 kb on + strand at 282.280 kb on + strand at 282.280 kb on + strand at 282.280 kb on + strand at 282.280 kb on + strand at 282.280 kb on + strand at 282.281 kb on - strand at 282.281 kb on - strand at 282.281 kb on - strand at 282.308 kb on + strand at 282.308 kb on + strand at 282.355 kb on + strand at 282.356 kb on - strand at 282.356 kb on - strand at 282.356 kb on - strand at 282.410 kb on + strand at 282.410 kb on + strand at 282.432 kb on - strand at 282.468 kb on + strand at 282.468 kb on + strand at 282.468 kb on + strand at 282.469 kb on - strand at 282.469 kb on - strand at 282.472 kb on - strand at 282.502 kb on - strand at 282.502 kb on - strand at 282.533 kb on + strand at 282.533 kb on + strand at 282.534 kb on - strand at 282.534 kb on - strand at 282.534 kb on - strand at 282.535 kb on + strand at 282.536 kb on - strand at 282.624 kb on + strand at 282.624 kb on + strand at 282.625 kb on - strand at 282.625 kb on - strand at 282.627 kb on + strand at 282.638 kb on + strand at 282.639 kb on - strand at 282.639 kb on - strand at 282.707 kb on - strand, within GFF2039 at 282.801 kb on - strand, within GFF2039 at 282.801 kb on - strand, within GFF2039 at 282.846 kb on + strand at 282.846 kb on + strand at 282.847 kb on - strand at 282.847 kb on - strand at 282.847 kb on - strand at 282.931 kb on + strand at 282.931 kb on + strand at 282.931 kb on + strand at 282.932 kb on - strand at 282.932 kb on - strand at 282.932 kb on - strand at 282.932 kb on - strand at 283.196 kb on + strand, within GFF2040 at 283.197 kb on - strand, within GFF2040 at 283.395 kb on - strand at 283.410 kb on - strand at 283.410 kb on - strand at 283.410 kb on - strand at 283.416 kb on - strand at 283.416 kb on - strand at 283.641 kb on - strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.919 kb on + strand, within GFF2041 at 283.920 kb on - strand, within GFF2041 at 283.922 kb on + strand, within GFF2041 at 283.922 kb on + strand, within GFF2041 at 283.922 kb on + strand, within GFF2041 at 283.923 kb on - strand, within GFF2041 at 283.923 kb on - strand, within GFF2041 at 283.923 kb on - strand, within GFF2041
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 282,154 + GFF2038 0.86 -0.4 282,253 + GFF2038 0.89 -0.1 282,280 + -0.3 282,280 + +0.3 282,280 + +0.3 282,280 + +0.4 282,280 + +0.5 282,280 + -1.6 282,281 - -1.3 282,281 - +1.1 282,281 - -0.4 282,308 + +1.1 282,308 + +0.1 282,355 + -2.0 282,356 - -1.0 282,356 - +0.3 282,356 - +0.3 282,410 + -0.3 282,410 + +0.2 282,432 - -1.4 282,468 + +0.1 282,468 + +0.4 282,468 + -1.2 282,469 - +0.4 282,469 - +0.5 282,472 - -0.3 282,502 - +0.4 282,502 - -0.9 282,533 + -0.3 282,533 + +1.2 282,534 - -0.8 282,534 - -0.3 282,534 - -0.3 282,535 + -1.9 282,536 - -1.9 282,624 + -0.9 282,624 + +1.0 282,625 - -0.3 282,625 - -1.3 282,627 + +1.5 282,638 + +0.3 282,639 - -0.5 282,639 - +0.1 282,707 - GFF2039 0.29 +0.9 282,801 - GFF2039 0.73 -0.7 282,801 - GFF2039 0.73 +0.2 282,846 + -0.6 282,846 + -0.7 282,847 - +0.8 282,847 - -0.2 282,847 - +0.8 282,931 + -0.1 282,931 + +0.7 282,931 + +0.3 282,932 - -0.1 282,932 - +0.4 282,932 - -0.7 282,932 - -0.8 283,196 + GFF2040 0.68 -0.5 283,197 - GFF2040 0.68 +0.2 283,395 - -0.4 283,410 - +0.2 283,410 - +0.3 283,410 - -0.8 283,416 - -1.3 283,416 - -0.3 283,641 - GFF2041 0.31 +0.1 283,919 + GFF2041 0.65 +1.4 283,919 + GFF2041 0.65 -0.3 283,919 + GFF2041 0.65 -0.1 283,919 + GFF2041 0.65 +0.3 283,920 - GFF2041 0.65 -1.2 283,922 + GFF2041 0.65 -0.9 283,922 + GFF2041 0.65 -0.6 283,922 + GFF2041 0.65 -0.7 283,923 - GFF2041 0.65 -0.2 283,923 - GFF2041 0.65 +0.4 283,923 - GFF2041 0.65 -0.3
Or see this region's nucleotide sequence