Strain Fitness in Pseudomonas sp. DMC3 around GFF2034

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2033 and GFF2034 are separated by 6 nucleotidesGFF2034 and GFF2035 are separated by 727 nucleotides GFF2033 - Multidrug resistance protein MdtA, at 272,383 to 273,483 GFF2033 GFF2034 - Nickel and cobalt resistance protein CnrA, at 273,490 to 276,558 GFF2034 GFF2035 - hypothetical protein, at 277,286 to 278,677 GFF2035 Position (kb) 273 274 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2at 272.492 kb on + strandat 272.551 kb on + strand, within GFF2033at 272.748 kb on + strand, within GFF2033at 272.749 kb on - strand, within GFF2033at 272.749 kb on - strand, within GFF2033at 272.807 kb on + strand, within GFF2033at 272.807 kb on + strand, within GFF2033at 272.808 kb on - strand, within GFF2033at 272.878 kb on + strand, within GFF2033at 273.277 kb on + strand, within GFF2033at 273.277 kb on + strand, within GFF2033at 273.277 kb on + strand, within GFF2033at 273.410 kb on + strandat 273.410 kb on + strandat 273.410 kb on + strandat 273.411 kb on - strandat 273.411 kb on - strandat 273.481 kb on + strandat 273.482 kb on - strandat 273.522 kb on + strandat 273.536 kb on + strandat 273.537 kb on - strandat 273.724 kb on + strandat 273.918 kb on + strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.919 kb on - strand, within GFF2034at 273.922 kb on + strand, within GFF2034at 273.923 kb on - strand, within GFF2034at 273.923 kb on - strand, within GFF2034at 273.923 kb on - strand, within GFF2034at 274.181 kb on + strand, within GFF2034at 274.181 kb on + strand, within GFF2034at 274.217 kb on + strand, within GFF2034at 274.248 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.624 kb on + strand, within GFF2034at 274.625 kb on - strand, within GFF2034at 274.625 kb on - strand, within GFF2034at 274.625 kb on - strand, within GFF2034at 274.625 kb on - strand, within GFF2034at 274.625 kb on - strand, within GFF2034at 274.628 kb on - strand, within GFF2034at 274.768 kb on + strand, within GFF2034at 274.768 kb on + strand, within GFF2034at 274.768 kb on + strand, within GFF2034at 274.769 kb on - strand, within GFF2034at 274.867 kb on + strand, within GFF2034at 274.867 kb on + strand, within GFF2034at 274.867 kb on + strand, within GFF2034at 274.868 kb on - strand, within GFF2034at 274.890 kb on - strand, within GFF2034at 274.890 kb on - strand, within GFF2034at 274.943 kb on - strand, within GFF2034at 275.023 kb on + strand, within GFF2034at 275.023 kb on + strand, within GFF2034at 275.024 kb on - strand, within GFF2034at 275.024 kb on - strand, within GFF2034at 275.038 kb on + strand, within GFF2034at 275.038 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.287 kb on + strand, within GFF2034at 275.288 kb on - strand, within GFF2034at 275.288 kb on - strand, within GFF2034at 275.288 kb on - strand, within GFF2034at 275.297 kb on - strand, within GFF2034at 275.324 kb on - strand, within GFF2034at 275.635 kb on + strand, within GFF2034at 275.635 kb on + strand, within GFF2034at 275.636 kb on - strand, within GFF2034at 275.636 kb on - strand, within GFF2034at 275.878 kb on + strand, within GFF2034at 275.878 kb on + strand, within GFF2034at 275.878 kb on + strand, within GFF2034at 275.934 kb on - strand, within GFF2034at 276.028 kb on + strand, within GFF2034at 276.028 kb on + strand, within GFF2034at 276.336 kb on + strandat 276.363 kb on + strandat 276.389 kb on + strandat 276.523 kb on + strandat 276.523 kb on + strandat 276.523 kb on + strandat 276.524 kb on - strandat 277.110 kb on - strandat 277.110 kb on - strandat 277.110 kb on - strandat 277.195 kb on + strandat 277.196 kb on - strandat 277.305 kb on + strandat 277.373 kb on + strandat 277.505 kb on + strand, within GFF2035at 277.505 kb on + strand, within GFF2035at 277.505 kb on + strand, within GFF2035at 277.551 kb on - strand, within GFF2035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
272,492 + -0.4
272,551 + GFF2033 0.15 +0.8
272,748 + GFF2033 0.33 +1.2
272,749 - GFF2033 0.33 +0.2
272,749 - GFF2033 0.33 +0.1
272,807 + GFF2033 0.39 +0.8
272,807 + GFF2033 0.39 +1.2
272,808 - GFF2033 0.39 -0.0
272,878 + GFF2033 0.45 -1.3
273,277 + GFF2033 0.81 +0.4
273,277 + GFF2033 0.81 +0.4
273,277 + GFF2033 0.81 -1.4
273,410 + -1.1
273,410 + -0.1
273,410 + -0.2
273,411 - -0.7
273,411 - +2.0
273,481 + +0.6
273,482 - -1.1
273,522 + +0.8
273,536 + +0.8
273,537 - +0.6
273,724 + +0.3
273,918 + GFF2034 0.14 -0.8
273,919 - GFF2034 0.14 +0.6
273,919 - GFF2034 0.14 -0.5
273,919 - GFF2034 0.14 -0.4
273,919 - GFF2034 0.14 -0.1
273,919 - GFF2034 0.14 +0.3
273,919 - GFF2034 0.14 +0.6
273,919 - GFF2034 0.14 -0.1
273,919 - GFF2034 0.14 -0.4
273,922 + GFF2034 0.14 -0.4
273,923 - GFF2034 0.14 -0.4
273,923 - GFF2034 0.14 +0.3
273,923 - GFF2034 0.14 -1.2
274,181 + GFF2034 0.23 -0.8
274,181 + GFF2034 0.23 -0.5
274,217 + GFF2034 0.24 -0.5
274,248 + GFF2034 0.25 -2.5
274,624 + GFF2034 0.37 -1.3
274,624 + GFF2034 0.37 +0.7
274,624 + GFF2034 0.37 +0.1
274,624 + GFF2034 0.37 +0.1
274,624 + GFF2034 0.37 -0.9
274,624 + GFF2034 0.37 +0.2
274,624 + GFF2034 0.37 +0.2
274,625 - GFF2034 0.37 -0.2
274,625 - GFF2034 0.37 -0.0
274,625 - GFF2034 0.37 +1.3
274,625 - GFF2034 0.37 -0.0
274,625 - GFF2034 0.37 +0.2
274,628 - GFF2034 0.37 -0.3
274,768 + GFF2034 0.42 -1.4
274,768 + GFF2034 0.42 +0.1
274,768 + GFF2034 0.42 +0.4
274,769 - GFF2034 0.42 -0.1
274,867 + GFF2034 0.45 +0.1
274,867 + GFF2034 0.45 -0.5
274,867 + GFF2034 0.45 +0.4
274,868 - GFF2034 0.45 -0.8
274,890 - GFF2034 0.46 +0.3
274,890 - GFF2034 0.46 +0.5
274,943 - GFF2034 0.47 +0.7
275,023 + GFF2034 0.50 +0.9
275,023 + GFF2034 0.50 +1.1
275,024 - GFF2034 0.50 -0.4
275,024 - GFF2034 0.50 -0.5
275,038 + GFF2034 0.50 +1.1
275,038 + GFF2034 0.50 -1.3
275,287 + GFF2034 0.59 -0.0
275,287 + GFF2034 0.59 +0.7
275,287 + GFF2034 0.59 -0.1
275,287 + GFF2034 0.59 -2.2
275,287 + GFF2034 0.59 +0.6
275,287 + GFF2034 0.59 -0.1
275,287 + GFF2034 0.59 -0.2
275,287 + GFF2034 0.59 +0.1
275,288 - GFF2034 0.59 -1.3
275,288 - GFF2034 0.59 -0.9
275,288 - GFF2034 0.59 +1.3
275,297 - GFF2034 0.59 -1.7
275,324 - GFF2034 0.60 -0.1
275,635 + GFF2034 0.70 -0.0
275,635 + GFF2034 0.70 +0.3
275,636 - GFF2034 0.70 +0.1
275,636 - GFF2034 0.70 -1.9
275,878 + GFF2034 0.78 +0.9
275,878 + GFF2034 0.78 -0.7
275,878 + GFF2034 0.78 -0.5
275,934 - GFF2034 0.80 +0.1
276,028 + GFF2034 0.83 -0.3
276,028 + GFF2034 0.83 +0.6
276,336 + +0.3
276,363 + -0.2
276,389 + -0.5
276,523 + -1.3
276,523 + -0.5
276,523 + +1.0
276,524 - -0.8
277,110 - -0.4
277,110 - -0.8
277,110 - +1.5
277,195 + -1.3
277,196 - +0.3
277,305 + +0.1
277,373 + +1.1
277,505 + GFF2035 0.16 -0.8
277,505 + GFF2035 0.16 +0.1
277,505 + GFF2035 0.16 -0.4
277,551 - GFF2035 0.19 -0.3

Or see this region's nucleotide sequence