Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2011 and GFF2012 overlap by 4 nucleotides GFF2012 and GFF2013 are separated by 48 nucleotides
GFF2011 - Sensor histidine kinase RcsC, at 249,255 to 251,525
GFF2011
GFF2012 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 251,522 to 252,532
GFF2012
GFF2013 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 252,581 to 253,582
GFF2013
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 250.719 kb on + strand, within GFF2011 at 250.719 kb on + strand, within GFF2011 at 250.881 kb on - strand, within GFF2011 at 251.394 kb on + strand at 251.394 kb on + strand at 251.395 kb on - strand at 251.445 kb on + strand at 251.445 kb on + strand at 251.445 kb on + strand at 251.446 kb on - strand at 251.448 kb on + strand at 251.448 kb on + strand at 251.449 kb on - strand at 251.449 kb on - strand at 251.748 kb on + strand, within GFF2012 at 251.948 kb on - strand, within GFF2012 at 251.980 kb on - strand, within GFF2012 at 252.208 kb on + strand, within GFF2012 at 252.209 kb on - strand, within GFF2012 at 252.209 kb on - strand, within GFF2012 at 252.209 kb on - strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.266 kb on + strand, within GFF2012 at 252.267 kb on - strand, within GFF2012 at 252.267 kb on - strand, within GFF2012 at 252.308 kb on + strand, within GFF2012 at 252.309 kb on - strand, within GFF2012 at 252.309 kb on - strand, within GFF2012 at 252.336 kb on + strand, within GFF2012 at 252.373 kb on + strand, within GFF2012 at 252.374 kb on - strand, within GFF2012 at 252.395 kb on + strand, within GFF2012 at 252.564 kb on + strand at 252.564 kb on + strand at 252.565 kb on - strand at 252.565 kb on - strand at 252.591 kb on + strand at 252.591 kb on + strand at 252.591 kb on + strand at 252.592 kb on - strand at 252.607 kb on + strand at 252.607 kb on + strand at 252.607 kb on + strand at 252.608 kb on - strand at 252.989 kb on + strand, within GFF2013 at 252.989 kb on + strand, within GFF2013 at 252.989 kb on + strand, within GFF2013 at 252.989 kb on + strand, within GFF2013 at 252.990 kb on - strand, within GFF2013 at 252.990 kb on - strand, within GFF2013 at 252.990 kb on - strand, within GFF2013 at 252.990 kb on - strand, within GFF2013 at 253.020 kb on - strand, within GFF2013 at 253.206 kb on - strand, within GFF2013 at 253.218 kb on - strand, within GFF2013 at 253.218 kb on - strand, within GFF2013 at 253.218 kb on - strand, within GFF2013
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 250,719 + GFF2011 0.64 +0.1 250,719 + GFF2011 0.64 -0.5 250,881 - GFF2011 0.72 +0.2 251,394 + +0.6 251,394 + -1.7 251,395 - -0.3 251,445 + +0.4 251,445 + -0.2 251,445 + +1.2 251,446 - +0.3 251,448 + +0.5 251,448 + +0.1 251,449 - -0.3 251,449 - +0.6 251,748 + GFF2012 0.22 -3.5 251,948 - GFF2012 0.42 -0.2 251,980 - GFF2012 0.45 -0.6 252,208 + GFF2012 0.68 -1.8 252,209 - GFF2012 0.68 -0.7 252,209 - GFF2012 0.68 -0.2 252,209 - GFF2012 0.68 -0.9 252,266 + GFF2012 0.74 -1.7 252,266 + GFF2012 0.74 -2.4 252,266 + GFF2012 0.74 -2.1 252,266 + GFF2012 0.74 -0.5 252,266 + GFF2012 0.74 -3.4 252,267 - GFF2012 0.74 -1.4 252,267 - GFF2012 0.74 +0.8 252,308 + GFF2012 0.78 -2.6 252,309 - GFF2012 0.78 -0.9 252,309 - GFF2012 0.78 -1.4 252,336 + GFF2012 0.81 -1.8 252,373 + GFF2012 0.84 -3.7 252,374 - GFF2012 0.84 +0.1 252,395 + GFF2012 0.86 -1.7 252,564 + +0.2 252,564 + -2.4 252,565 - -0.4 252,565 - -0.0 252,591 + -0.4 252,591 + +2.1 252,591 + -0.5 252,592 - +0.1 252,607 + -0.5 252,607 + +0.3 252,607 + -1.7 252,608 - +1.1 252,989 + GFF2013 0.41 +0.1 252,989 + GFF2013 0.41 +0.2 252,989 + GFF2013 0.41 -0.6 252,989 + GFF2013 0.41 -0.3 252,990 - GFF2013 0.41 -0.9 252,990 - GFF2013 0.41 +0.3 252,990 - GFF2013 0.41 +1.4 252,990 - GFF2013 0.41 -0.4 253,020 - GFF2013 0.44 +0.5 253,206 - GFF2013 0.62 -0.0 253,218 - GFF2013 0.64 +1.4 253,218 - GFF2013 0.64 +0.3 253,218 - GFF2013 0.64 +0.2
Or see this region's nucleotide sequence