Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1978 and GFF1979 are separated by 275 nucleotides GFF1979 and GFF1980 are separated by 12 nucleotides
GFF1978 - Inner membrane metabolite transport protein YhjE, at 209,427 to 210,743
GFF1978
GFF1979 - hypothetical protein, at 211,019 to 212,260
GFF1979
GFF1980 - Inner membrane protein YpjD, at 212,273 to 213,142
GFF1980
Position (kb) 211
212
213 Strain fitness (log2 ratio) -1
0
1
2 at 210.106 kb on + strand, within GFF1978 at 210.106 kb on + strand, within GFF1978 at 210.106 kb on + strand, within GFF1978 at 210.107 kb on - strand, within GFF1978 at 210.149 kb on + strand, within GFF1978 at 210.150 kb on - strand, within GFF1978 at 210.468 kb on - strand, within GFF1978 at 210.631 kb on + strand at 210.631 kb on + strand at 210.640 kb on + strand at 210.641 kb on - strand at 210.641 kb on - strand at 210.641 kb on - strand at 210.724 kb on + strand at 210.724 kb on + strand at 210.784 kb on + strand at 210.784 kb on + strand at 210.785 kb on - strand at 210.838 kb on - strand at 210.932 kb on - strand at 210.932 kb on - strand at 210.933 kb on + strand at 210.933 kb on + strand at 210.934 kb on - strand at 210.978 kb on - strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.054 kb on + strand at 211.055 kb on - strand at 211.055 kb on - strand at 211.055 kb on - strand at 211.055 kb on - strand at 211.055 kb on - strand at 211.055 kb on - strand at 211.055 kb on - strand at 211.264 kb on + strand, within GFF1979 at 211.264 kb on + strand, within GFF1979 at 211.467 kb on + strand, within GFF1979 at 211.467 kb on + strand, within GFF1979 at 211.468 kb on - strand, within GFF1979 at 211.468 kb on - strand, within GFF1979 at 211.477 kb on - strand, within GFF1979 at 211.477 kb on - strand, within GFF1979 at 211.956 kb on + strand, within GFF1979 at 212.150 kb on - strand at 212.150 kb on - strand at 212.150 kb on - strand at 212.207 kb on + strand at 212.207 kb on + strand at 212.208 kb on - strand at 212.225 kb on + strand at 212.225 kb on + strand at 212.226 kb on - strand at 212.262 kb on + strand at 212.262 kb on + strand at 212.263 kb on - strand at 212.289 kb on + strand at 212.289 kb on + strand at 212.290 kb on - strand at 212.290 kb on - strand at 212.290 kb on - strand at 212.316 kb on + strand at 212.514 kb on - strand, within GFF1980 at 212.687 kb on + strand, within GFF1980 at 212.687 kb on + strand, within GFF1980 at 212.687 kb on + strand, within GFF1980 at 212.687 kb on + strand, within GFF1980 at 212.688 kb on - strand, within GFF1980 at 212.688 kb on - strand, within GFF1980 at 212.909 kb on + strand, within GFF1980 at 212.909 kb on + strand, within GFF1980 at 212.909 kb on + strand, within GFF1980 at 212.909 kb on + strand, within GFF1980 at 212.909 kb on + strand, within GFF1980 at 212.910 kb on - strand, within GFF1980 at 212.910 kb on - strand, within GFF1980 at 212.910 kb on - strand, within GFF1980 at 212.910 kb on - strand, within GFF1980 at 212.910 kb on - strand, within GFF1980 at 212.910 kb on - strand, within GFF1980 at 212.917 kb on + strand, within GFF1980 at 212.918 kb on - strand, within GFF1980 at 212.918 kb on - strand, within GFF1980 at 213.033 kb on + strand, within GFF1980 at 213.033 kb on + strand, within GFF1980 at 213.033 kb on + strand, within GFF1980 at 213.085 kb on + strand at 213.085 kb on + strand at 213.085 kb on + strand at 213.085 kb on + strand at 213.085 kb on + strand at 213.085 kb on + strand at 213.086 kb on - strand at 213.086 kb on - strand at 213.086 kb on - strand at 213.126 kb on + strand at 213.126 kb on + strand at 213.193 kb on + strand at 213.193 kb on + strand at 213.194 kb on - strand at 213.194 kb on - strand at 213.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 210,106 + GFF1978 0.52 -0.0 210,106 + GFF1978 0.52 +0.5 210,106 + GFF1978 0.52 +0.3 210,107 - GFF1978 0.52 +0.2 210,149 + GFF1978 0.55 -0.3 210,150 - GFF1978 0.55 -0.6 210,468 - GFF1978 0.79 +0.5 210,631 + +0.3 210,631 + +1.5 210,640 + -0.1 210,641 - -0.7 210,641 - +0.6 210,641 - +0.2 210,724 + -0.6 210,724 + +1.6 210,784 + -0.9 210,784 + -0.5 210,785 - -0.2 210,838 - +0.6 210,932 - +0.5 210,932 - +0.9 210,933 + +0.6 210,933 + +0.3 210,934 - -0.1 210,978 - -0.4 211,054 + +0.1 211,054 + -0.2 211,054 + +0.5 211,054 + -0.5 211,054 + -0.9 211,054 + +0.2 211,054 + +0.5 211,054 + -0.5 211,054 + -0.8 211,054 + +0.9 211,054 + -0.0 211,054 + +0.2 211,054 + -0.1 211,054 + +1.2 211,054 + +0.1 211,055 - +1.5 211,055 - +0.8 211,055 - +0.2 211,055 - +0.5 211,055 - -0.3 211,055 - +0.0 211,055 - -0.2 211,264 + GFF1979 0.20 +0.4 211,264 + GFF1979 0.20 +0.2 211,467 + GFF1979 0.36 +2.0 211,467 + GFF1979 0.36 -0.7 211,468 - GFF1979 0.36 +0.5 211,468 - GFF1979 0.36 -0.5 211,477 - GFF1979 0.37 -1.2 211,477 - GFF1979 0.37 +0.6 211,956 + GFF1979 0.75 -0.4 212,150 - -1.2 212,150 - +1.1 212,150 - -0.7 212,207 + +0.2 212,207 + -0.5 212,208 - +0.3 212,225 + +1.2 212,225 + -0.8 212,226 - -0.6 212,262 + +0.5 212,262 + +0.6 212,263 - +1.1 212,289 + -0.4 212,289 + -0.4 212,290 - -1.0 212,290 - +0.6 212,290 - -0.5 212,316 + +0.0 212,514 - GFF1980 0.28 +0.2 212,687 + GFF1980 0.48 -0.7 212,687 + GFF1980 0.48 -1.4 212,687 + GFF1980 0.48 +0.3 212,687 + GFF1980 0.48 +0.3 212,688 - GFF1980 0.48 -0.9 212,688 - GFF1980 0.48 -0.9 212,909 + GFF1980 0.73 -0.4 212,909 + GFF1980 0.73 -1.2 212,909 + GFF1980 0.73 +0.7 212,909 + GFF1980 0.73 +0.1 212,909 + GFF1980 0.73 +0.2 212,910 - GFF1980 0.73 +0.1 212,910 - GFF1980 0.73 -1.0 212,910 - GFF1980 0.73 -0.2 212,910 - GFF1980 0.73 -0.9 212,910 - GFF1980 0.73 +0.2 212,910 - GFF1980 0.73 +0.2 212,917 + GFF1980 0.74 -1.5 212,918 - GFF1980 0.74 -0.9 212,918 - GFF1980 0.74 -0.5 213,033 + GFF1980 0.87 -0.7 213,033 + GFF1980 0.87 -0.7 213,033 + GFF1980 0.87 -0.6 213,085 + -1.3 213,085 + +0.4 213,085 + +0.6 213,085 + +0.2 213,085 + -0.6 213,085 + +0.4 213,086 - +0.4 213,086 - +0.4 213,086 - +0.2 213,126 + +0.1 213,126 + +0.8 213,193 + -0.2 213,193 + -0.9 213,194 - +0.1 213,194 - +0.2 213,194 - +0.9
Or see this region's nucleotide sequence