Strain Fitness in Pseudomonas sp. DMC3 around GFF1962

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1961 and GFF1962 are separated by 285 nucleotidesGFF1962 and GFF1963 overlap by 193 nucleotides GFF1961 - Membrane-bound lytic murein transglycosylase F, at 184,029 to 185,489 GFF1961 GFF1962 - Phosphoribosylformylglycinamidine synthase, at 185,775 to 189,671 GFF1962 GFF1963 - hypothetical protein, at 189,479 to 189,940 GFF1963 Position (kb) 185 186 187 188 189 190Strain fitness (log2 ratio) -2 -1 0 1at 184.859 kb on - strand, within GFF1961at 184.859 kb on - strand, within GFF1961at 184.859 kb on - strand, within GFF1961at 184.966 kb on + strand, within GFF1961at 184.966 kb on + strand, within GFF1961at 184.970 kb on - strand, within GFF1961at 185.092 kb on + strand, within GFF1961at 185.120 kb on - strand, within GFF1961at 185.120 kb on - strand, within GFF1961at 185.293 kb on + strand, within GFF1961at 185.294 kb on - strand, within GFF1961at 185.329 kb on + strand, within GFF1961at 185.329 kb on + strand, within GFF1961at 185.329 kb on + strand, within GFF1961at 185.329 kb on + strand, within GFF1961at 185.330 kb on - strand, within GFF1961at 185.379 kb on + strandat 185.499 kb on - strandat 185.501 kb on - strandat 185.501 kb on - strandat 185.537 kb on - strandat 185.542 kb on + strandat 185.542 kb on + strandat 185.542 kb on + strandat 185.607 kb on - strandat 185.618 kb on - strandat 185.722 kb on + strandat 185.722 kb on + strandat 185.727 kb on + strandat 185.727 kb on + strandat 185.728 kb on - strandat 185.872 kb on - strandat 185.872 kb on - strandat 185.952 kb on + strandat 185.982 kb on - strandat 186.108 kb on + strandat 186.108 kb on + strandat 186.108 kb on + strandat 186.108 kb on + strandat 186.109 kb on - strandat 186.109 kb on - strandat 186.109 kb on - strandat 186.109 kb on - strandat 186.109 kb on - strandat 186.333 kb on + strand, within GFF1962at 186.333 kb on + strand, within GFF1962at 186.501 kb on + strand, within GFF1962at 186.501 kb on + strand, within GFF1962at 186.501 kb on + strand, within GFF1962at 186.502 kb on - strand, within GFF1962at 186.502 kb on - strand, within GFF1962at 186.535 kb on - strand, within GFF1962at 186.938 kb on + strand, within GFF1962at 186.939 kb on - strand, within GFF1962at 187.420 kb on - strand, within GFF1962at 187.420 kb on - strand, within GFF1962at 187.526 kb on + strand, within GFF1962at 187.527 kb on - strand, within GFF1962at 187.527 kb on - strand, within GFF1962at 187.527 kb on - strand, within GFF1962at 187.837 kb on - strand, within GFF1962at 187.837 kb on - strand, within GFF1962at 187.869 kb on - strand, within GFF1962at 188.028 kb on + strand, within GFF1962at 188.240 kb on + strand, within GFF1962at 188.752 kb on - strand, within GFF1962at 188.752 kb on - strand, within GFF1962at 188.851 kb on - strand, within GFF1962at 188.851 kb on - strand, within GFF1962at 188.880 kb on + strand, within GFF1962at 188.880 kb on + strand, within GFF1962at 189.161 kb on + strand, within GFF1962at 189.161 kb on + strand, within GFF1962at 189.680 kb on + strand, within GFF1963at 189.680 kb on + strand, within GFF1963at 189.680 kb on + strand, within GFF1963at 189.681 kb on - strand, within GFF1963at 189.767 kb on + strand, within GFF1963at 189.768 kb on - strand, within GFF1963at 189.944 kb on + strandat 189.945 kb on - strandat 189.959 kb on + strandat 190.113 kb on - strandat 190.646 kb on + strandat 190.646 kb on + strandat 190.646 kb on + strandat 190.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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184,859 - GFF1961 0.57 -0.4
184,859 - GFF1961 0.57 +0.2
184,859 - GFF1961 0.57 +0.1
184,966 + GFF1961 0.64 +1.1
184,966 + GFF1961 0.64 -0.4
184,970 - GFF1961 0.64 +0.4
185,092 + GFF1961 0.73 -0.2
185,120 - GFF1961 0.75 +0.0
185,120 - GFF1961 0.75 +1.0
185,293 + GFF1961 0.87 +0.6
185,294 - GFF1961 0.87 +0.3
185,329 + GFF1961 0.89 +1.1
185,329 + GFF1961 0.89 -0.1
185,329 + GFF1961 0.89 +0.6
185,329 + GFF1961 0.89 -1.4
185,330 - GFF1961 0.89 +1.6
185,379 + +0.3
185,499 - -0.3
185,501 - +0.3
185,501 - -0.1
185,537 - +0.4
185,542 + -1.3
185,542 + -1.4
185,542 + -0.1
185,607 - -0.0
185,618 - +0.1
185,722 + -1.1
185,722 + -2.4
185,727 + -0.4
185,727 + -1.9
185,728 - -0.4
185,872 - -0.9
185,872 - -1.5
185,952 + -1.8
185,982 - -1.4
186,108 + -1.5
186,108 + -2.6
186,108 + -2.1
186,108 + -2.4
186,109 - -1.9
186,109 - -1.4
186,109 - -0.7
186,109 - -1.4
186,109 - -2.2
186,333 + GFF1962 0.14 -1.5
186,333 + GFF1962 0.14 -0.7
186,501 + GFF1962 0.19 -0.7
186,501 + GFF1962 0.19 -0.4
186,501 + GFF1962 0.19 -2.6
186,502 - GFF1962 0.19 -1.7
186,502 - GFF1962 0.19 -0.9
186,535 - GFF1962 0.20 -1.7
186,938 + GFF1962 0.30 -1.5
186,939 - GFF1962 0.30 -2.4
187,420 - GFF1962 0.42 -2.1
187,420 - GFF1962 0.42 -1.9
187,526 + GFF1962 0.45 -1.7
187,527 - GFF1962 0.45 -2.1
187,527 - GFF1962 0.45 -0.2
187,527 - GFF1962 0.45 -1.8
187,837 - GFF1962 0.53 -1.5
187,837 - GFF1962 0.53 -1.9
187,869 - GFF1962 0.54 -0.4
188,028 + GFF1962 0.58 -0.9
188,240 + GFF1962 0.63 -0.7
188,752 - GFF1962 0.76 -0.7
188,752 - GFF1962 0.76 -1.8
188,851 - GFF1962 0.79 -1.8
188,851 - GFF1962 0.79 -1.7
188,880 + GFF1962 0.80 -2.3
188,880 + GFF1962 0.80 -1.8
189,161 + GFF1962 0.87 -2.4
189,161 + GFF1962 0.87 -0.4
189,680 + GFF1963 0.44 +0.9
189,680 + GFF1963 0.44 -1.0
189,680 + GFF1963 0.44 -0.1
189,681 - GFF1963 0.44 -0.2
189,767 + GFF1963 0.62 -0.1
189,768 - GFF1963 0.63 -1.8
189,944 + +1.2
189,945 - -0.3
189,959 + +0.7
190,113 - -0.0
190,646 + -0.2
190,646 + -0.6
190,646 + -0.7
190,647 - -0.9

Or see this region's nucleotide sequence