Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1941 and GFF1942 are separated by 150 nucleotides GFF1942 and GFF1943 are separated by 41 nucleotides GFF1943 and GFF1944 are separated by 84 nucleotides
GFF1941 - putative transporter YycB, at 162,912 to 164,216
GFF1941
GFF1942 - hypothetical protein, at 164,367 to 164,876
GFF1942
GFF1943 - hypothetical protein, at 164,918 to 165,220
GFF1943
GFF1944 - hypothetical protein, at 165,305 to 166,240
GFF1944
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1 at 163.959 kb on - strand, within GFF1941 at 164.187 kb on + strand at 164.187 kb on + strand at 164.187 kb on + strand at 164.187 kb on + strand at 164.187 kb on + strand at 164.187 kb on + strand at 164.188 kb on - strand at 164.188 kb on - strand at 164.188 kb on - strand at 164.188 kb on - strand at 164.343 kb on + strand at 164.384 kb on + strand at 164.385 kb on - strand at 164.385 kb on - strand at 164.388 kb on + strand at 164.443 kb on - strand, within GFF1942 at 164.443 kb on - strand, within GFF1942 at 164.487 kb on + strand, within GFF1942 at 164.487 kb on + strand, within GFF1942 at 164.487 kb on + strand, within GFF1942 at 164.488 kb on - strand, within GFF1942 at 164.488 kb on - strand, within GFF1942 at 164.503 kb on + strand, within GFF1942 at 164.503 kb on + strand, within GFF1942 at 164.503 kb on + strand, within GFF1942 at 164.652 kb on + strand, within GFF1942 at 164.653 kb on - strand, within GFF1942 at 164.878 kb on - strand at 164.898 kb on + strand at 164.982 kb on - strand, within GFF1943 at 165.011 kb on + strand, within GFF1943 at 165.012 kb on - strand, within GFF1943 at 165.206 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.245 kb on - strand at 165.245 kb on - strand at 165.267 kb on + strand at 165.283 kb on + strand at 165.283 kb on + strand at 165.330 kb on - strand at 165.403 kb on + strand, within GFF1944 at 165.404 kb on - strand, within GFF1944 at 165.404 kb on - strand, within GFF1944 at 165.491 kb on + strand, within GFF1944 at 165.491 kb on + strand, within GFF1944 at 165.491 kb on + strand, within GFF1944 at 165.491 kb on + strand, within GFF1944 at 165.491 kb on + strand, within GFF1944 at 165.491 kb on + strand, within GFF1944 at 165.492 kb on - strand, within GFF1944 at 165.492 kb on - strand, within GFF1944 at 165.492 kb on - strand, within GFF1944 at 165.492 kb on - strand, within GFF1944 at 165.492 kb on - strand, within GFF1944
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 163,959 - GFF1941 0.80 -0.6 164,187 + -0.3 164,187 + +0.4 164,187 + -0.3 164,187 + +0.1 164,187 + -0.6 164,187 + -0.6 164,188 - +0.3 164,188 - -0.8 164,188 - +0.2 164,188 - -0.7 164,343 + +1.2 164,384 + -0.9 164,385 - +0.4 164,385 - -0.2 164,388 + -0.6 164,443 - GFF1942 0.15 +0.1 164,443 - GFF1942 0.15 -0.9 164,487 + GFF1942 0.24 -1.2 164,487 + GFF1942 0.24 +0.2 164,487 + GFF1942 0.24 -0.7 164,488 - GFF1942 0.24 +0.2 164,488 - GFF1942 0.24 -0.9 164,503 + GFF1942 0.27 -0.2 164,503 + GFF1942 0.27 +0.1 164,503 + GFF1942 0.27 -0.6 164,652 + GFF1942 0.56 -0.7 164,653 - GFF1942 0.56 +0.3 164,878 - +0.4 164,898 + +0.6 164,982 - GFF1943 0.21 -0.7 165,011 + GFF1943 0.31 -1.2 165,012 - GFF1943 0.31 -1.5 165,206 + +1.2 165,244 + -0.6 165,244 + -0.4 165,245 - +0.1 165,245 - +0.3 165,267 + +0.6 165,283 + +1.2 165,283 + +1.0 165,330 - +0.5 165,403 + GFF1944 0.10 -0.7 165,404 - GFF1944 0.11 -0.8 165,404 - GFF1944 0.11 +0.5 165,491 + GFF1944 0.20 +0.9 165,491 + GFF1944 0.20 +0.2 165,491 + GFF1944 0.20 -0.1 165,491 + GFF1944 0.20 -0.2 165,491 + GFF1944 0.20 +0.9 165,491 + GFF1944 0.20 +0.0 165,492 - GFF1944 0.20 -0.2 165,492 - GFF1944 0.20 +0.2 165,492 - GFF1944 0.20 +0.6 165,492 - GFF1944 0.20 -0.2 165,492 - GFF1944 0.20 +0.9
Or see this region's nucleotide sequence