Strain Fitness in Pseudomonas sp. DMC3 around GFF1842

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1840 and GFF1841 are separated by 128 nucleotidesGFF1841 and GFF1842 are separated by 126 nucleotidesGFF1842 and GFF1843 overlap by 8 nucleotides GFF1840 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 47,520 to 48,785 GFF1840 GFF1841 - ATP phosphoribosyltransferase, at 48,914 to 49,549 GFF1841 GFF1842 - Histidinol dehydrogenase, at 49,676 to 51,025 GFF1842 GFF1843 - Histidinol-phosphate aminotransferase, at 51,018 to 52,070 GFF1843 Position (kb) 49 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 48.841 kb on + strandat 48.841 kb on + strandat 48.841 kb on + strandat 48.841 kb on + strandat 48.842 kb on - strandat 48.842 kb on - strandat 48.842 kb on - strandat 48.888 kb on + strandat 48.889 kb on - strandat 48.889 kb on - strandat 48.897 kb on - strandat 49.085 kb on + strand, within GFF1841at 49.085 kb on + strand, within GFF1841at 49.085 kb on + strand, within GFF1841at 49.085 kb on + strand, within GFF1841at 49.086 kb on - strand, within GFF1841at 49.124 kb on - strand, within GFF1841at 49.142 kb on + strand, within GFF1841at 49.142 kb on + strand, within GFF1841at 49.161 kb on - strand, within GFF1841at 49.280 kb on + strand, within GFF1841at 49.280 kb on + strand, within GFF1841at 49.284 kb on - strand, within GFF1841at 49.284 kb on - strand, within GFF1841at 49.322 kb on + strand, within GFF1841at 49.552 kb on + strandat 49.629 kb on - strandat 49.661 kb on + strandat 49.662 kb on - strandat 49.662 kb on - strandat 49.675 kb on + strandat 49.985 kb on + strand, within GFF1842at 49.985 kb on + strand, within GFF1842at 50.018 kb on + strand, within GFF1842at 50.019 kb on - strand, within GFF1842at 50.081 kb on + strand, within GFF1842at 50.081 kb on + strand, within GFF1842at 50.285 kb on + strand, within GFF1842at 50.335 kb on + strand, within GFF1842at 50.335 kb on + strand, within GFF1842at 50.335 kb on + strand, within GFF1842at 50.336 kb on - strand, within GFF1842at 50.336 kb on - strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.339 kb on + strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.340 kb on - strand, within GFF1842at 50.344 kb on - strand, within GFF1842at 50.344 kb on - strand, within GFF1842at 50.344 kb on - strand, within GFF1842at 50.778 kb on - strand, within GFF1842at 50.846 kb on + strand, within GFF1842at 51.023 kb on + strandat 51.023 kb on + strandat 51.060 kb on + strandat 51.061 kb on - strandat 51.107 kb on + strandat 51.108 kb on - strandat 51.231 kb on + strand, within GFF1843at 51.234 kb on + strand, within GFF1843at 51.234 kb on + strand, within GFF1843at 51.234 kb on + strand, within GFF1843at 51.234 kb on + strand, within GFF1843at 51.235 kb on - strand, within GFF1843at 51.235 kb on - strand, within GFF1843at 51.235 kb on - strand, within GFF1843at 51.348 kb on + strand, within GFF1843at 51.348 kb on + strand, within GFF1843at 51.348 kb on + strand, within GFF1843at 51.348 kb on + strand, within GFF1843at 51.358 kb on - strand, within GFF1843at 51.358 kb on - strand, within GFF1843at 51.567 kb on + strand, within GFF1843at 51.567 kb on + strand, within GFF1843at 51.568 kb on - strand, within GFF1843at 51.568 kb on - strand, within GFF1843at 51.568 kb on - strand, within GFF1843at 51.568 kb on - strand, within GFF1843at 51.568 kb on - strand, within GFF1843

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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48,841 + +0.8
48,841 + +1.3
48,841 + +0.6
48,841 + +0.8
48,842 - -1.5
48,842 - -1.5
48,842 - -2.9
48,888 + -0.2
48,889 - -3.4
48,889 - -2.6
48,897 - -3.1
49,085 + GFF1841 0.27 -3.6
49,085 + GFF1841 0.27 -2.9
49,085 + GFF1841 0.27 -1.7
49,085 + GFF1841 0.27 -3.5
49,086 - GFF1841 0.27 -1.7
49,124 - GFF1841 0.33 -3.2
49,142 + GFF1841 0.36 -0.7
49,142 + GFF1841 0.36 -3.1
49,161 - GFF1841 0.39 -2.9
49,280 + GFF1841 0.58 -4.3
49,280 + GFF1841 0.58 -1.5
49,284 - GFF1841 0.58 -1.9
49,284 - GFF1841 0.58 -3.2
49,322 + GFF1841 0.64 -2.3
49,552 + +2.0
49,629 - -1.6
49,661 + -0.4
49,662 - -0.8
49,662 - -3.2
49,675 + -3.7
49,985 + GFF1842 0.23 -1.4
49,985 + GFF1842 0.23 -0.7
50,018 + GFF1842 0.25 -1.8
50,019 - GFF1842 0.25 -2.8
50,081 + GFF1842 0.30 -3.6
50,081 + GFF1842 0.30 -0.7
50,285 + GFF1842 0.45 -2.1
50,335 + GFF1842 0.49 -3.1
50,335 + GFF1842 0.49 -3.7
50,335 + GFF1842 0.49 -0.5
50,336 - GFF1842 0.49 -3.1
50,336 - GFF1842 0.49 -1.4
50,339 + GFF1842 0.49 -3.1
50,339 + GFF1842 0.49 -4.5
50,339 + GFF1842 0.49 -1.8
50,339 + GFF1842 0.49 -2.3
50,339 + GFF1842 0.49 -1.2
50,339 + GFF1842 0.49 -2.7
50,339 + GFF1842 0.49 -1.9
50,339 + GFF1842 0.49 -2.7
50,339 + GFF1842 0.49 -1.2
50,339 + GFF1842 0.49 -1.2
50,339 + GFF1842 0.49 -2.7
50,339 + GFF1842 0.49 -1.4
50,339 + GFF1842 0.49 -2.5
50,339 + GFF1842 0.49 -1.7
50,339 + GFF1842 0.49 -3.0
50,339 + GFF1842 0.49 -2.4
50,340 - GFF1842 0.49 -1.7
50,340 - GFF1842 0.49 -3.9
50,340 - GFF1842 0.49 -3.7
50,340 - GFF1842 0.49 -2.1
50,340 - GFF1842 0.49 -2.9
50,340 - GFF1842 0.49 -4.4
50,340 - GFF1842 0.49 -1.9
50,340 - GFF1842 0.49 -3.7
50,340 - GFF1842 0.49 -0.9
50,340 - GFF1842 0.49 -0.9
50,344 - GFF1842 0.49 -3.3
50,344 - GFF1842 0.49 -2.6
50,344 - GFF1842 0.49 -2.8
50,778 - GFF1842 0.82 -2.7
50,846 + GFF1842 0.87 -0.9
51,023 + -0.8
51,023 + -0.9
51,060 + -0.5
51,061 - -1.3
51,107 + +0.2
51,108 - -0.4
51,231 + GFF1843 0.20 -0.6
51,234 + GFF1843 0.21 +0.8
51,234 + GFF1843 0.21 -0.4
51,234 + GFF1843 0.21 +0.1
51,234 + GFF1843 0.21 +0.8
51,235 - GFF1843 0.21 -1.5
51,235 - GFF1843 0.21 -1.0
51,235 - GFF1843 0.21 -0.1
51,348 + GFF1843 0.31 -0.4
51,348 + GFF1843 0.31 -1.4
51,348 + GFF1843 0.31 -0.2
51,348 + GFF1843 0.31 -1.4
51,358 - GFF1843 0.32 -0.9
51,358 - GFF1843 0.32 +1.1
51,567 + GFF1843 0.52 +1.6
51,567 + GFF1843 0.52 -0.9
51,568 - GFF1843 0.52 -1.2
51,568 - GFF1843 0.52 -0.2
51,568 - GFF1843 0.52 -1.1
51,568 - GFF1843 0.52 +0.8
51,568 - GFF1843 0.52 +0.6

Or see this region's nucleotide sequence