Strain Fitness in Pseudomonas sp. DMC3 around GFF1783

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1781 and GFF1782 are separated by 140 nucleotidesGFF1782 and GFF1783 are separated by 323 nucleotidesGFF1783 and GFF1784 are separated by 249 nucleotides GFF1781 - Methyl-accepting chemotaxis protein McpA, at 581,137 to 583,083 GFF1781 GFF1782 - Flavin-dependent monooxygenase, reductase subunit HsaB, at 583,224 to 583,709 GFF1782 GFF1783 - hypothetical protein, at 584,033 to 585,439 GFF1783 GFF1784 - Putrescine-binding periplasmic protein SpuD, at 585,689 to 586,789 GFF1784 Position (kb) 584 585 586Strain fitness (log2 ratio) -2 -1 0 1 2at 583.157 kb on + strandat 583.157 kb on + strandat 583.157 kb on + strandat 583.158 kb on - strandat 583.264 kb on + strandat 583.264 kb on + strandat 583.264 kb on + strandat 583.264 kb on + strandat 583.264 kb on + strandat 583.264 kb on + strandat 583.345 kb on + strand, within GFF1782at 583.345 kb on + strand, within GFF1782at 583.345 kb on + strand, within GFF1782at 583.346 kb on - strand, within GFF1782at 583.346 kb on - strand, within GFF1782at 583.465 kb on + strand, within GFF1782at 583.466 kb on - strand, within GFF1782at 583.534 kb on + strand, within GFF1782at 583.549 kb on + strand, within GFF1782at 583.549 kb on + strand, within GFF1782at 583.550 kb on - strand, within GFF1782at 583.550 kb on - strand, within GFF1782at 583.550 kb on - strand, within GFF1782at 583.550 kb on - strand, within GFF1782at 583.650 kb on - strand, within GFF1782at 583.690 kb on + strandat 583.690 kb on + strandat 583.691 kb on - strandat 583.997 kb on - strandat 583.997 kb on - strandat 583.997 kb on - strandat 584.005 kb on - strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.032 kb on + strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.033 kb on - strandat 584.074 kb on + strandat 584.074 kb on + strandat 584.074 kb on + strandat 584.084 kb on + strandat 584.085 kb on - strandat 584.242 kb on + strand, within GFF1783at 584.242 kb on + strand, within GFF1783at 584.242 kb on + strand, within GFF1783at 584.243 kb on - strand, within GFF1783at 584.243 kb on - strand, within GFF1783at 584.376 kb on - strand, within GFF1783at 584.376 kb on - strand, within GFF1783at 584.504 kb on + strand, within GFF1783at 584.518 kb on + strand, within GFF1783at 584.518 kb on + strand, within GFF1783at 584.519 kb on - strand, within GFF1783at 584.577 kb on - strand, within GFF1783at 584.577 kb on - strand, within GFF1783at 584.577 kb on - strand, within GFF1783at 584.577 kb on - strand, within GFF1783at 584.690 kb on + strand, within GFF1783at 584.690 kb on + strand, within GFF1783at 584.691 kb on - strand, within GFF1783at 584.691 kb on - strand, within GFF1783at 584.691 kb on - strand, within GFF1783at 584.691 kb on - strand, within GFF1783at 584.702 kb on + strand, within GFF1783at 584.712 kb on - strand, within GFF1783at 584.756 kb on + strand, within GFF1783at 584.756 kb on + strand, within GFF1783at 584.933 kb on + strand, within GFF1783at 585.152 kb on + strand, within GFF1783at 585.153 kb on - strand, within GFF1783at 585.173 kb on + strand, within GFF1783at 585.174 kb on - strand, within GFF1783at 585.212 kb on + strand, within GFF1783at 585.213 kb on - strand, within GFF1783at 585.246 kb on - strand, within GFF1783at 585.293 kb on + strand, within GFF1783at 585.293 kb on + strand, within GFF1783at 585.371 kb on + strandat 585.372 kb on - strandat 585.372 kb on - strandat 585.372 kb on - strandat 585.372 kb on - strandat 585.375 kb on - strandat 585.375 kb on - strandat 585.454 kb on + strandat 585.454 kb on + strandat 585.454 kb on + strandat 585.454 kb on + strandat 585.454 kb on + strandat 585.454 kb on + strandat 585.454 kb on + strandat 585.455 kb on - strandat 585.455 kb on - strandat 585.455 kb on - strandat 585.493 kb on + strandat 585.494 kb on - strandat 585.547 kb on - strandat 585.586 kb on + strandat 585.587 kb on - strandat 585.618 kb on + strandat 585.640 kb on + strandat 585.782 kb on + strandat 585.783 kb on - strandat 585.797 kb on + strandat 585.798 kb on - strandat 585.798 kb on - strandat 585.798 kb on - strandat 586.076 kb on + strand, within GFF1784at 586.077 kb on - strand, within GFF1784at 586.077 kb on - strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.082 kb on + strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.083 kb on - strand, within GFF1784at 586.257 kb on - strand, within GFF1784at 586.295 kb on + strand, within GFF1784at 586.296 kb on - strand, within GFF1784at 586.334 kb on + strand, within GFF1784at 586.335 kb on - strand, within GFF1784at 586.343 kb on + strand, within GFF1784at 586.343 kb on + strand, within GFF1784at 586.361 kb on + strand, within GFF1784at 586.361 kb on + strand, within GFF1784at 586.361 kb on + strand, within GFF1784at 586.361 kb on + strand, within GFF1784at 586.361 kb on + strand, within GFF1784at 586.361 kb on + strand, within GFF1784at 586.362 kb on - strand, within GFF1784at 586.362 kb on - strand, within GFF1784at 586.362 kb on - strand, within GFF1784at 586.362 kb on - strand, within GFF1784at 586.362 kb on - strand, within GFF1784at 586.406 kb on + strand, within GFF1784at 586.421 kb on + strand, within GFF1784at 586.422 kb on - strand, within GFF1784

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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583,157 + -0.2
583,157 + +0.0
583,157 + -0.2
583,158 - +0.7
583,264 + -0.6
583,264 + -0.3
583,264 + -0.6
583,264 + +0.5
583,264 + -0.7
583,264 + -0.6
583,345 + GFF1782 0.25 -0.5
583,345 + GFF1782 0.25 -2.1
583,345 + GFF1782 0.25 -0.2
583,346 - GFF1782 0.25 -0.1
583,346 - GFF1782 0.25 -0.2
583,465 + GFF1782 0.50 +0.4
583,466 - GFF1782 0.50 +0.7
583,534 + GFF1782 0.64 -0.3
583,549 + GFF1782 0.67 +0.8
583,549 + GFF1782 0.67 +0.1
583,550 - GFF1782 0.67 +0.4
583,550 - GFF1782 0.67 +0.6
583,550 - GFF1782 0.67 +0.0
583,550 - GFF1782 0.67 -0.4
583,650 - GFF1782 0.88 +0.4
583,690 + +1.6
583,690 + -0.4
583,691 - -0.3
583,997 - -1.7
583,997 - -1.1
583,997 - -1.6
584,005 - +0.1
584,032 + -2.0
584,032 + +0.0
584,032 + +0.2
584,032 + +0.8
584,032 + +0.5
584,032 + -1.3
584,032 + -0.2
584,032 + +0.4
584,032 + -0.1
584,033 - -0.5
584,033 - -0.6
584,033 - -0.0
584,033 - -0.6
584,033 - -0.7
584,033 - -0.6
584,033 - -0.4
584,033 - -0.8
584,074 + -0.2
584,074 + -0.6
584,074 + -1.2
584,084 + +0.9
584,085 - +0.0
584,242 + GFF1783 0.15 +0.9
584,242 + GFF1783 0.15 -0.6
584,242 + GFF1783 0.15 -1.8
584,243 - GFF1783 0.15 -0.4
584,243 - GFF1783 0.15 +1.7
584,376 - GFF1783 0.24 -0.2
584,376 - GFF1783 0.24 -0.6
584,504 + GFF1783 0.33 +0.5
584,518 + GFF1783 0.34 -2.0
584,518 + GFF1783 0.34 -0.6
584,519 - GFF1783 0.35 +0.4
584,577 - GFF1783 0.39 +0.0
584,577 - GFF1783 0.39 +0.3
584,577 - GFF1783 0.39 -1.0
584,577 - GFF1783 0.39 -1.4
584,690 + GFF1783 0.47 +0.4
584,690 + GFF1783 0.47 +0.3
584,691 - GFF1783 0.47 +0.4
584,691 - GFF1783 0.47 +0.0
584,691 - GFF1783 0.47 +0.7
584,691 - GFF1783 0.47 -0.8
584,702 + GFF1783 0.48 +0.3
584,712 - GFF1783 0.48 -0.5
584,756 + GFF1783 0.51 +0.1
584,756 + GFF1783 0.51 -0.0
584,933 + GFF1783 0.64 -1.2
585,152 + GFF1783 0.80 +0.4
585,153 - GFF1783 0.80 -0.2
585,173 + GFF1783 0.81 +0.4
585,174 - GFF1783 0.81 +1.0
585,212 + GFF1783 0.84 -1.1
585,213 - GFF1783 0.84 -0.6
585,246 - GFF1783 0.86 +0.8
585,293 + GFF1783 0.90 -2.4
585,293 + GFF1783 0.90 +0.5
585,371 + +0.8
585,372 - -0.7
585,372 - -0.2
585,372 - -0.4
585,372 - -1.4
585,375 - +0.5
585,375 - +0.2
585,454 + +0.4
585,454 + +1.0
585,454 + +0.1
585,454 + -0.6
585,454 + -0.0
585,454 + -0.6
585,454 + +0.4
585,455 - +1.6
585,455 - -1.3
585,455 - +0.6
585,493 + -0.4
585,494 - -0.2
585,547 - +0.1
585,586 + -0.1
585,587 - -0.7
585,618 + +0.6
585,640 + -1.6
585,782 + -0.5
585,783 - -0.7
585,797 + +0.2
585,798 - +1.0
585,798 - +0.4
585,798 - +1.2
586,076 + GFF1784 0.35 +0.9
586,077 - GFF1784 0.35 +1.2
586,077 - GFF1784 0.35 -0.6
586,082 + GFF1784 0.36 -0.4
586,082 + GFF1784 0.36 +0.4
586,082 + GFF1784 0.36 -1.0
586,082 + GFF1784 0.36 +0.4
586,082 + GFF1784 0.36 +0.1
586,082 + GFF1784 0.36 +0.4
586,082 + GFF1784 0.36 -0.1
586,082 + GFF1784 0.36 -0.6
586,082 + GFF1784 0.36 -2.2
586,082 + GFF1784 0.36 +0.4
586,082 + GFF1784 0.36 +0.7
586,083 - GFF1784 0.36 -1.0
586,083 - GFF1784 0.36 -0.7
586,083 - GFF1784 0.36 +0.9
586,083 - GFF1784 0.36 +0.4
586,083 - GFF1784 0.36 -0.0
586,083 - GFF1784 0.36 -0.2
586,083 - GFF1784 0.36 -0.5
586,083 - GFF1784 0.36 -0.3
586,083 - GFF1784 0.36 -0.5
586,083 - GFF1784 0.36 +0.4
586,083 - GFF1784 0.36 -0.4
586,257 - GFF1784 0.52 +0.2
586,295 + GFF1784 0.55 -0.5
586,296 - GFF1784 0.55 +0.6
586,334 + GFF1784 0.59 -0.6
586,335 - GFF1784 0.59 -1.0
586,343 + GFF1784 0.59 +1.8
586,343 + GFF1784 0.59 +0.1
586,361 + GFF1784 0.61 +0.9
586,361 + GFF1784 0.61 -0.8
586,361 + GFF1784 0.61 +0.0
586,361 + GFF1784 0.61 +0.2
586,361 + GFF1784 0.61 -0.9
586,361 + GFF1784 0.61 +0.4
586,362 - GFF1784 0.61 -0.6
586,362 - GFF1784 0.61 +0.3
586,362 - GFF1784 0.61 -2.5
586,362 - GFF1784 0.61 -1.2
586,362 - GFF1784 0.61 -0.8
586,406 + GFF1784 0.65 +0.1
586,421 + GFF1784 0.66 -0.5
586,422 - GFF1784 0.67 -0.4

Or see this region's nucleotide sequence