Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1650 and GFF1651 are separated by 150 nucleotides GFF1651 and GFF1652 overlap by 4 nucleotides
GFF1650 - hypothetical protein, at 438,701 to 439,747
GFF1650
GFF1651 - Sensor histidine kinase RcsC, at 439,898 to 441,208
GFF1651
GFF1652 - Transcriptional regulatory protein OmpR, at 441,205 to 441,945
GFF1652
Position (kb) 439
440
441
442 Strain fitness (log2 ratio) -2
-1
0
1 at 438.972 kb on + strand, within GFF1650 at 438.972 kb on + strand, within GFF1650 at 438.972 kb on + strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.531 kb on + strand, within GFF1650 at 439.532 kb on - strand, within GFF1650 at 439.532 kb on - strand, within GFF1650 at 439.533 kb on + strand, within GFF1650 at 439.533 kb on + strand, within GFF1650 at 439.534 kb on - strand, within GFF1650 at 439.534 kb on - strand, within GFF1650 at 439.534 kb on - strand, within GFF1650 at 439.883 kb on + strand at 439.884 kb on - strand at 439.884 kb on - strand at 439.960 kb on + strand at 439.960 kb on + strand at 439.961 kb on - strand at 439.961 kb on - strand at 439.961 kb on - strand at 440.055 kb on + strand, within GFF1651 at 440.055 kb on + strand, within GFF1651 at 440.056 kb on - strand, within GFF1651 at 440.056 kb on - strand, within GFF1651 at 440.326 kb on + strand, within GFF1651 at 440.326 kb on + strand, within GFF1651 at 440.368 kb on - strand, within GFF1651 at 440.868 kb on + strand, within GFF1651 at 440.962 kb on - strand, within GFF1651 at 440.967 kb on + strand, within GFF1651 at 441.102 kb on + strand at 441.102 kb on + strand at 441.103 kb on - strand at 441.103 kb on - strand at 441.105 kb on + strand at 441.105 kb on + strand at 441.106 kb on - strand at 441.248 kb on + strand at 441.248 kb on + strand at 441.248 kb on + strand at 441.248 kb on + strand at 441.249 kb on - strand at 441.249 kb on - strand at 441.249 kb on - strand at 441.249 kb on - strand at 441.249 kb on - strand at 441.249 kb on - strand at 441.273 kb on + strand at 441.274 kb on - strand at 441.274 kb on - strand at 441.275 kb on + strand at 441.275 kb on + strand at 441.275 kb on + strand at 441.275 kb on + strand at 441.276 kb on - strand at 441.276 kb on - strand at 441.570 kb on + strand, within GFF1652 at 441.638 kb on + strand, within GFF1652 at 441.878 kb on + strand at 441.879 kb on - strand at 441.879 kb on - strand at 441.879 kb on - strand at 441.879 kb on - strand at 441.879 kb on - strand at 441.879 kb on - strand at 441.887 kb on - strand at 441.985 kb on + strand at 441.986 kb on - strand at 442.020 kb on + strand at 442.020 kb on + strand at 442.021 kb on - strand at 442.030 kb on + strand at 442.030 kb on + strand at 442.030 kb on + strand at 442.031 kb on - strand at 442.031 kb on - strand at 442.031 kb on - strand at 442.088 kb on + strand at 442.098 kb on + strand at 442.098 kb on + strand at 442.099 kb on - strand at 442.099 kb on - strand at 442.103 kb on - strand at 442.103 kb on - strand at 442.117 kb on + strand at 442.117 kb on + strand at 442.118 kb on - strand at 442.118 kb on - strand at 442.118 kb on - strand at 442.177 kb on + strand at 442.177 kb on + strand at 442.177 kb on + strand at 442.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 438,972 + GFF1650 0.26 +0.4 438,972 + GFF1650 0.26 +0.2 438,972 + GFF1650 0.26 -1.4 438,973 - GFF1650 0.26 -1.0 438,973 - GFF1650 0.26 +0.7 438,973 - GFF1650 0.26 +0.4 438,973 - GFF1650 0.26 -0.6 438,973 - GFF1650 0.26 +0.5 438,973 - GFF1650 0.26 +0.4 439,456 - GFF1650 0.72 -0.2 439,456 - GFF1650 0.72 +1.1 439,456 - GFF1650 0.72 +0.5 439,456 - GFF1650 0.72 -0.1 439,531 + GFF1650 0.79 -1.0 439,532 - GFF1650 0.79 -0.3 439,532 - GFF1650 0.79 -0.6 439,533 + GFF1650 0.79 -0.3 439,533 + GFF1650 0.79 +1.4 439,534 - GFF1650 0.80 -0.3 439,534 - GFF1650 0.80 -0.8 439,534 - GFF1650 0.80 -0.4 439,883 + -0.2 439,884 - -0.6 439,884 - +0.5 439,960 + -1.6 439,960 + -2.4 439,961 - -1.4 439,961 - -1.9 439,961 - -1.1 440,055 + GFF1651 0.12 -0.6 440,055 + GFF1651 0.12 -1.5 440,056 - GFF1651 0.12 -0.1 440,056 - GFF1651 0.12 -1.3 440,326 + GFF1651 0.33 -1.6 440,326 + GFF1651 0.33 -1.6 440,368 - GFF1651 0.36 -1.4 440,868 + GFF1651 0.74 -2.3 440,962 - GFF1651 0.81 -0.4 440,967 + GFF1651 0.82 -0.5 441,102 + -1.6 441,102 + +0.0 441,103 - -0.3 441,103 - -1.9 441,105 + -0.4 441,105 + -0.3 441,106 - -1.8 441,248 + -0.4 441,248 + +0.3 441,248 + -1.3 441,248 + -0.6 441,249 - -0.6 441,249 - -0.2 441,249 - +0.8 441,249 - +0.4 441,249 - -1.3 441,249 - -2.4 441,273 + -0.5 441,274 - -0.4 441,274 - -0.1 441,275 + +0.4 441,275 + +0.2 441,275 + -1.2 441,275 + +0.7 441,276 - -1.3 441,276 - +0.6 441,570 + GFF1652 0.49 +0.2 441,638 + GFF1652 0.58 +0.6 441,878 + -0.6 441,879 - +0.1 441,879 - -0.5 441,879 - +0.6 441,879 - -0.1 441,879 - +1.0 441,879 - -0.3 441,887 - -0.2 441,985 + -1.1 441,986 - -1.8 442,020 + -0.1 442,020 + -1.6 442,021 - -0.4 442,030 + +0.0 442,030 + +1.5 442,030 + +0.2 442,031 - +0.1 442,031 - +0.0 442,031 - +0.3 442,088 + -2.2 442,098 + +0.1 442,098 + +0.0 442,099 - -0.2 442,099 - -1.4 442,103 - -0.0 442,103 - +1.6 442,117 + +0.9 442,117 + -1.0 442,118 - -0.2 442,118 - +0.4 442,118 - -0.2 442,177 + +1.2 442,177 + -0.5 442,177 + -0.3 442,177 + +0.2
Or see this region's nucleotide sequence