Strain Fitness in Pseudomonas sp. DMC3 around GFF1604

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1603 and GFF1604 are separated by 173 nucleotidesGFF1604 and GFF1605 are separated by 300 nucleotides GFF1603 - hypothetical protein, at 385,912 to 386,841 GFF1603 GFF1604 - putative branched-chain-amino-acid aminotransferase, at 387,015 to 388,034 GFF1604 GFF1605 - Dihydrolipoyl dehydrogenase, at 388,335 to 389,708 GFF1605 Position (kb) 387 388 389Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 386.155 kb on + strand, within GFF1603at 386.155 kb on + strand, within GFF1603at 386.155 kb on + strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.156 kb on - strand, within GFF1603at 386.323 kb on + strand, within GFF1603at 386.323 kb on + strand, within GFF1603at 386.323 kb on + strand, within GFF1603at 386.323 kb on + strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.324 kb on - strand, within GFF1603at 386.434 kb on + strand, within GFF1603at 386.438 kb on - strand, within GFF1603at 386.536 kb on + strand, within GFF1603at 386.536 kb on + strand, within GFF1603at 386.536 kb on + strand, within GFF1603at 386.537 kb on - strand, within GFF1603at 386.537 kb on - strand, within GFF1603at 386.539 kb on + strand, within GFF1603at 386.539 kb on + strand, within GFF1603at 386.539 kb on + strand, within GFF1603at 386.539 kb on + strand, within GFF1603at 386.540 kb on - strand, within GFF1603at 386.540 kb on - strand, within GFF1603at 386.540 kb on - strand, within GFF1603at 386.650 kb on - strand, within GFF1603at 386.713 kb on - strand, within GFF1603at 387.083 kb on - strandat 387.083 kb on - strandat 387.083 kb on - strandat 387.145 kb on + strand, within GFF1604at 387.145 kb on + strand, within GFF1604at 387.145 kb on + strand, within GFF1604at 387.146 kb on - strand, within GFF1604at 387.146 kb on - strand, within GFF1604at 387.152 kb on + strand, within GFF1604at 387.152 kb on + strand, within GFF1604at 387.152 kb on + strand, within GFF1604at 387.153 kb on - strand, within GFF1604at 387.409 kb on + strand, within GFF1604at 387.469 kb on + strand, within GFF1604at 387.469 kb on + strand, within GFF1604at 387.470 kb on - strand, within GFF1604at 387.470 kb on - strand, within GFF1604at 387.470 kb on - strand, within GFF1604at 387.470 kb on - strand, within GFF1604at 387.470 kb on - strand, within GFF1604at 387.520 kb on + strand, within GFF1604at 387.521 kb on - strand, within GFF1604at 387.661 kb on + strand, within GFF1604at 387.662 kb on - strand, within GFF1604at 387.877 kb on + strand, within GFF1604at 387.877 kb on + strand, within GFF1604at 387.877 kb on + strand, within GFF1604at 387.877 kb on + strand, within GFF1604at 387.878 kb on - strand, within GFF1604at 387.878 kb on - strand, within GFF1604at 387.918 kb on - strand, within GFF1604at 387.961 kb on + strandat 387.962 kb on - strandat 387.962 kb on - strandat 387.966 kb on + strandat 387.966 kb on + strandat 387.966 kb on + strandat 387.967 kb on - strandat 387.967 kb on - strandat 387.967 kb on - strandat 387.970 kb on + strandat 387.970 kb on + strandat 387.971 kb on - strandat 387.991 kb on + strandat 387.991 kb on + strandat 387.991 kb on + strandat 387.992 kb on - strandat 387.992 kb on - strandat 388.044 kb on + strandat 388.044 kb on + strandat 388.045 kb on - strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.107 kb on + strandat 388.108 kb on - strandat 388.108 kb on - strandat 388.108 kb on - strandat 388.108 kb on - strandat 388.150 kb on + strandat 388.150 kb on + strandat 388.151 kb on - strandat 388.151 kb on - strandat 388.151 kb on - strandat 388.189 kb on + strandat 388.189 kb on + strandat 388.189 kb on + strandat 388.190 kb on - strandat 388.190 kb on - strandat 388.190 kb on - strandat 388.190 kb on - strandat 388.190 kb on - strandat 388.190 kb on - strandat 388.190 kb on - strandat 388.680 kb on - strand, within GFF1605at 388.905 kb on - strand, within GFF1605at 388.932 kb on + strand, within GFF1605at 389.021 kb on - strand, within GFF1605at 389.021 kb on - strand, within GFF1605

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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386,155 + GFF1603 0.26 +0.4
386,155 + GFF1603 0.26 +0.6
386,155 + GFF1603 0.26 -1.5
386,156 - GFF1603 0.26 +1.0
386,156 - GFF1603 0.26 +1.0
386,156 - GFF1603 0.26 -1.9
386,156 - GFF1603 0.26 -1.0
386,156 - GFF1603 0.26 -0.2
386,156 - GFF1603 0.26 -0.4
386,156 - GFF1603 0.26 +0.6
386,156 - GFF1603 0.26 -0.0
386,323 + GFF1603 0.44 -0.6
386,323 + GFF1603 0.44 -0.8
386,323 + GFF1603 0.44 -0.4
386,323 + GFF1603 0.44 +0.4
386,324 - GFF1603 0.44 +0.3
386,324 - GFF1603 0.44 -0.2
386,324 - GFF1603 0.44 +0.6
386,324 - GFF1603 0.44 -0.2
386,324 - GFF1603 0.44 -0.9
386,324 - GFF1603 0.44 -0.8
386,324 - GFF1603 0.44 -0.6
386,324 - GFF1603 0.44 +0.6
386,434 + GFF1603 0.56 +0.1
386,438 - GFF1603 0.57 -0.7
386,536 + GFF1603 0.67 -0.3
386,536 + GFF1603 0.67 -0.3
386,536 + GFF1603 0.67 +0.8
386,537 - GFF1603 0.67 +0.0
386,537 - GFF1603 0.67 +1.5
386,539 + GFF1603 0.67 -0.0
386,539 + GFF1603 0.67 +0.6
386,539 + GFF1603 0.67 +0.8
386,539 + GFF1603 0.67 -0.4
386,540 - GFF1603 0.68 -0.7
386,540 - GFF1603 0.68 -0.3
386,540 - GFF1603 0.68 +0.1
386,650 - GFF1603 0.79 -0.1
386,713 - GFF1603 0.86 +0.4
387,083 - -2.2
387,083 - -4.0
387,083 - -3.1
387,145 + GFF1604 0.13 -2.5
387,145 + GFF1604 0.13 -3.4
387,145 + GFF1604 0.13 -3.8
387,146 - GFF1604 0.13 -2.9
387,146 - GFF1604 0.13 -2.5
387,152 + GFF1604 0.13 -0.6
387,152 + GFF1604 0.13 -3.5
387,152 + GFF1604 0.13 -2.9
387,153 - GFF1604 0.14 -3.1
387,409 + GFF1604 0.39 -4.1
387,469 + GFF1604 0.45 -1.6
387,469 + GFF1604 0.45 -1.6
387,470 - GFF1604 0.45 -3.1
387,470 - GFF1604 0.45 -3.0
387,470 - GFF1604 0.45 -3.7
387,470 - GFF1604 0.45 -2.2
387,470 - GFF1604 0.45 -1.9
387,520 + GFF1604 0.50 -2.9
387,521 - GFF1604 0.50 -3.0
387,661 + GFF1604 0.63 -0.4
387,662 - GFF1604 0.63 -3.4
387,877 + GFF1604 0.85 -2.9
387,877 + GFF1604 0.85 -2.9
387,877 + GFF1604 0.85 -2.8
387,877 + GFF1604 0.85 -3.7
387,878 - GFF1604 0.85 -1.9
387,878 - GFF1604 0.85 -2.1
387,918 - GFF1604 0.89 -4.0
387,961 + -3.7
387,962 - -3.8
387,962 - -4.3
387,966 + -0.6
387,966 + -1.2
387,966 + -3.4
387,967 - -0.6
387,967 - -3.3
387,967 - -0.6
387,970 + -3.4
387,970 + -2.7
387,971 - -4.0
387,991 + -1.4
387,991 + -1.2
387,991 + -2.3
387,992 - -2.9
387,992 - -3.6
388,044 + -1.3
388,044 + -1.5
388,045 - +0.1
388,107 + -2.5
388,107 + -1.1
388,107 + -2.9
388,107 + -0.9
388,107 + -1.8
388,107 + -1.8
388,107 + -1.5
388,107 + -2.0
388,107 + -2.9
388,107 + -1.6
388,107 + -2.4
388,107 + -2.2
388,108 - -0.7
388,108 - -0.0
388,108 - +0.1
388,108 - +0.4
388,150 + -0.7
388,150 + -0.8
388,151 - -0.8
388,151 - -0.5
388,151 - -0.3
388,189 + -0.1
388,189 + +0.6
388,189 + -0.2
388,190 - -1.3
388,190 - -0.2
388,190 - -0.7
388,190 - -1.5
388,190 - -0.8
388,190 - -0.6
388,190 - +1.0
388,680 - GFF1605 0.25 +2.2
388,905 - GFF1605 0.41 -0.7
388,932 + GFF1605 0.43 +0.6
389,021 - GFF1605 0.50 +1.0
389,021 - GFF1605 0.50 +1.0

Or see this region's nucleotide sequence