Strain Fitness in Pseudomonas sp. DMC3 around GFF1535

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1534 and GFF1535 are separated by 0 nucleotidesGFF1535 and GFF1536 are separated by 116 nucleotides GFF1534 - Serine--tRNA ligase, at 321,932 to 323,212 GFF1534 GFF1535 - Siroheme synthase, at 323,213 to 324,607 GFF1535 GFF1536 - Glutathionyl-hydroquinone reductase YqjG, at 324,724 to 325,725 GFF1536 Position (kb) 323 324 325Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 323.220 kb on - strandat 323.405 kb on + strand, within GFF1535at 323.663 kb on + strand, within GFF1535at 323.664 kb on - strand, within GFF1535at 323.664 kb on - strand, within GFF1535at 323.867 kb on + strand, within GFF1535at 323.868 kb on - strand, within GFF1535at 323.951 kb on + strand, within GFF1535at 323.952 kb on - strand, within GFF1535at 324.011 kb on + strand, within GFF1535at 324.011 kb on + strand, within GFF1535at 324.011 kb on + strand, within GFF1535at 324.012 kb on - strand, within GFF1535at 324.012 kb on - strand, within GFF1535at 324.012 kb on - strand, within GFF1535at 324.356 kb on + strand, within GFF1535at 324.356 kb on + strand, within GFF1535at 324.356 kb on + strand, within GFF1535at 324.357 kb on - strand, within GFF1535at 324.357 kb on - strand, within GFF1535at 324.451 kb on + strand, within GFF1535at 324.452 kb on - strand, within GFF1535at 324.452 kb on - strand, within GFF1535at 324.452 kb on - strand, within GFF1535at 324.452 kb on - strand, within GFF1535at 324.452 kb on - strand, within GFF1535at 324.452 kb on - strand, within GFF1535at 324.605 kb on + strandat 324.606 kb on - strandat 324.721 kb on + strandat 324.721 kb on + strandat 324.776 kb on - strandat 324.776 kb on - strandat 324.842 kb on + strand, within GFF1536at 324.843 kb on - strand, within GFF1536at 324.843 kb on - strand, within GFF1536at 324.843 kb on - strand, within GFF1536at 324.845 kb on + strand, within GFF1536at 324.845 kb on + strand, within GFF1536at 324.845 kb on + strand, within GFF1536at 324.845 kb on + strand, within GFF1536at 324.845 kb on + strand, within GFF1536at 324.846 kb on - strand, within GFF1536at 324.846 kb on - strand, within GFF1536at 324.846 kb on - strand, within GFF1536at 324.846 kb on - strand, within GFF1536at 324.846 kb on - strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.899 kb on + strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.900 kb on - strand, within GFF1536at 324.933 kb on - strand, within GFF1536at 324.974 kb on + strand, within GFF1536at 324.974 kb on + strand, within GFF1536at 324.975 kb on - strand, within GFF1536at 324.975 kb on - strand, within GFF1536at 325.031 kb on + strand, within GFF1536at 325.032 kb on - strand, within GFF1536at 325.046 kb on + strand, within GFF1536at 325.046 kb on + strand, within GFF1536at 325.094 kb on - strand, within GFF1536at 325.094 kb on - strand, within GFF1536at 325.094 kb on - strand, within GFF1536at 325.115 kb on + strand, within GFF1536at 325.115 kb on + strand, within GFF1536at 325.116 kb on - strand, within GFF1536at 325.116 kb on - strand, within GFF1536at 325.148 kb on + strand, within GFF1536at 325.173 kb on - strand, within GFF1536at 325.237 kb on - strand, within GFF1536at 325.352 kb on + strand, within GFF1536at 325.353 kb on - strand, within GFF1536at 325.353 kb on - strand, within GFF1536at 325.371 kb on + strand, within GFF1536at 325.518 kb on + strand, within GFF1536at 325.556 kb on + strand, within GFF1536at 325.557 kb on - strand, within GFF1536at 325.557 kb on - strand, within GFF1536at 325.565 kb on + strand, within GFF1536

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
323,220 - -2.7
323,405 + GFF1535 0.14 -2.8
323,663 + GFF1535 0.32 -2.3
323,664 - GFF1535 0.32 -3.0
323,664 - GFF1535 0.32 -3.2
323,867 + GFF1535 0.47 -3.9
323,868 - GFF1535 0.47 -1.4
323,951 + GFF1535 0.53 -3.3
323,952 - GFF1535 0.53 -2.2
324,011 + GFF1535 0.57 -1.9
324,011 + GFF1535 0.57 -1.4
324,011 + GFF1535 0.57 -2.3
324,012 - GFF1535 0.57 -3.0
324,012 - GFF1535 0.57 -2.3
324,012 - GFF1535 0.57 -0.6
324,356 + GFF1535 0.82 +1.0
324,356 + GFF1535 0.82 -0.6
324,356 + GFF1535 0.82 -1.6
324,357 - GFF1535 0.82 -1.4
324,357 - GFF1535 0.82 -2.2
324,451 + GFF1535 0.89 -2.8
324,452 - GFF1535 0.89 -1.4
324,452 - GFF1535 0.89 -0.2
324,452 - GFF1535 0.89 -0.6
324,452 - GFF1535 0.89 -2.3
324,452 - GFF1535 0.89 -2.3
324,452 - GFF1535 0.89 -3.3
324,605 + -1.4
324,606 - -1.4
324,721 + +0.8
324,721 + -0.3
324,776 - -1.3
324,776 - +0.2
324,842 + GFF1536 0.12 +0.1
324,843 - GFF1536 0.12 -0.4
324,843 - GFF1536 0.12 -0.2
324,843 - GFF1536 0.12 -1.1
324,845 + GFF1536 0.12 +0.3
324,845 + GFF1536 0.12 +0.7
324,845 + GFF1536 0.12 -0.5
324,845 + GFF1536 0.12 -1.0
324,845 + GFF1536 0.12 +0.8
324,846 - GFF1536 0.12 +0.0
324,846 - GFF1536 0.12 -0.1
324,846 - GFF1536 0.12 +0.8
324,846 - GFF1536 0.12 +0.1
324,846 - GFF1536 0.12 +0.0
324,899 + GFF1536 0.17 +0.2
324,899 + GFF1536 0.17 -0.1
324,899 + GFF1536 0.17 -0.2
324,899 + GFF1536 0.17 -0.2
324,899 + GFF1536 0.17 -0.3
324,899 + GFF1536 0.17 -0.5
324,899 + GFF1536 0.17 +0.0
324,899 + GFF1536 0.17 +0.1
324,899 + GFF1536 0.17 +0.3
324,899 + GFF1536 0.17 -0.3
324,899 + GFF1536 0.17 +0.3
324,900 - GFF1536 0.18 +0.2
324,900 - GFF1536 0.18 -0.5
324,900 - GFF1536 0.18 +1.3
324,900 - GFF1536 0.18 -2.0
324,900 - GFF1536 0.18 -0.4
324,900 - GFF1536 0.18 -0.2
324,900 - GFF1536 0.18 +0.1
324,900 - GFF1536 0.18 +1.6
324,900 - GFF1536 0.18 +0.1
324,933 - GFF1536 0.21 +0.3
324,974 + GFF1536 0.25 -0.5
324,974 + GFF1536 0.25 +1.8
324,975 - GFF1536 0.25 -0.8
324,975 - GFF1536 0.25 +0.4
325,031 + GFF1536 0.31 -0.2
325,032 - GFF1536 0.31 -0.6
325,046 + GFF1536 0.32 +1.0
325,046 + GFF1536 0.32 +0.4
325,094 - GFF1536 0.37 -0.0
325,094 - GFF1536 0.37 -0.9
325,094 - GFF1536 0.37 +0.4
325,115 + GFF1536 0.39 -0.1
325,115 + GFF1536 0.39 +0.2
325,116 - GFF1536 0.39 +0.8
325,116 - GFF1536 0.39 -0.8
325,148 + GFF1536 0.42 +0.3
325,173 - GFF1536 0.45 +0.0
325,237 - GFF1536 0.51 -0.4
325,352 + GFF1536 0.63 -0.2
325,353 - GFF1536 0.63 +0.1
325,353 - GFF1536 0.63 +0.8
325,371 + GFF1536 0.65 -1.5
325,518 + GFF1536 0.79 +0.9
325,556 + GFF1536 0.83 -0.2
325,557 - GFF1536 0.83 -0.6
325,557 - GFF1536 0.83 -0.6
325,565 + GFF1536 0.84 +1.1

Or see this region's nucleotide sequence