Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1444 and GFF1445 are separated by 163 nucleotides GFF1445 and GFF1446 are separated by 149 nucleotides GFF1446 and GFF1447 are separated by 227 nucleotides
GFF1444 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 210,160 to 211,443
GFF1444
GFF1445 - Lon protease, at 211,607 to 214,003
GFF1445
GFF1446 - DNA-binding protein HU-beta, at 214,153 to 214,425
GFF1446
GFF1447 - Peptidyl-prolyl cis-trans isomerase D, at 214,653 to 216,524
GFF1447
Position (kb) 211
212
213
214
215 Strain fitness (log2 ratio) -2
-1
0
1 at 210.623 kb on - strand, within GFF1444 at 210.623 kb on - strand, within GFF1444 at 210.623 kb on - strand, within GFF1444 at 210.709 kb on + strand, within GFF1444 at 210.710 kb on - strand, within GFF1444 at 210.710 kb on - strand, within GFF1444 at 211.257 kb on + strand, within GFF1444 at 211.258 kb on - strand, within GFF1444 at 211.315 kb on + strand at 211.315 kb on + strand at 211.316 kb on - strand at 211.316 kb on - strand at 211.316 kb on - strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.393 kb on + strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.394 kb on - strand at 211.395 kb on + strand at 211.395 kb on + strand at 211.395 kb on + strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.396 kb on - strand at 211.399 kb on + strand at 211.399 kb on + strand at 211.399 kb on + strand at 211.399 kb on + strand at 211.442 kb on - strand at 211.442 kb on - strand at 211.442 kb on - strand at 211.493 kb on + strand at 211.505 kb on + strand at 211.505 kb on + strand at 211.505 kb on + strand at 211.561 kb on + strand at 211.561 kb on + strand at 211.561 kb on + strand at 211.562 kb on - strand at 211.562 kb on - strand at 211.562 kb on - strand at 211.562 kb on - strand at 211.584 kb on - strand at 211.594 kb on + strand at 211.810 kb on + strand at 211.888 kb on + strand, within GFF1445 at 211.889 kb on - strand, within GFF1445 at 212.015 kb on + strand, within GFF1445 at 212.015 kb on + strand, within GFF1445 at 212.016 kb on - strand, within GFF1445 at 212.016 kb on - strand, within GFF1445 at 212.156 kb on + strand, within GFF1445 at 212.276 kb on + strand, within GFF1445 at 212.276 kb on + strand, within GFF1445 at 212.277 kb on - strand, within GFF1445 at 212.277 kb on - strand, within GFF1445 at 212.277 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.280 kb on - strand, within GFF1445 at 212.474 kb on + strand, within GFF1445 at 212.474 kb on + strand, within GFF1445 at 212.475 kb on - strand, within GFF1445 at 212.475 kb on - strand, within GFF1445 at 212.475 kb on - strand, within GFF1445 at 212.515 kb on + strand, within GFF1445 at 212.520 kb on + strand, within GFF1445 at 212.520 kb on + strand, within GFF1445 at 212.520 kb on + strand, within GFF1445 at 212.520 kb on + strand, within GFF1445 at 212.520 kb on + strand, within GFF1445 at 212.521 kb on - strand, within GFF1445 at 212.521 kb on - strand, within GFF1445 at 212.521 kb on - strand, within GFF1445 at 212.521 kb on - strand, within GFF1445 at 212.521 kb on - strand, within GFF1445 at 212.603 kb on + strand, within GFF1445 at 212.678 kb on - strand, within GFF1445 at 212.720 kb on - strand, within GFF1445 at 212.786 kb on + strand, within GFF1445 at 212.786 kb on + strand, within GFF1445 at 212.787 kb on - strand, within GFF1445 at 212.787 kb on - strand, within GFF1445 at 212.787 kb on - strand, within GFF1445 at 212.838 kb on + strand, within GFF1445 at 212.960 kb on + strand, within GFF1445 at 212.960 kb on + strand, within GFF1445 at 212.960 kb on + strand, within GFF1445 at 212.960 kb on + strand, within GFF1445 at 212.976 kb on - strand, within GFF1445 at 212.976 kb on - strand, within GFF1445 at 213.107 kb on + strand, within GFF1445 at 213.108 kb on - strand, within GFF1445 at 213.108 kb on - strand, within GFF1445 at 213.197 kb on + strand, within GFF1445 at 213.197 kb on + strand, within GFF1445 at 213.197 kb on + strand, within GFF1445 at 213.197 kb on + strand, within GFF1445 at 213.198 kb on - strand, within GFF1445 at 213.198 kb on - strand, within GFF1445 at 213.198 kb on - strand, within GFF1445 at 213.198 kb on - strand, within GFF1445 at 213.198 kb on - strand, within GFF1445 at 213.608 kb on - strand, within GFF1445 at 213.945 kb on + strand at 213.945 kb on + strand at 213.991 kb on + strand at 214.004 kb on + strand at 214.004 kb on + strand at 214.004 kb on + strand at 214.004 kb on + strand at 214.005 kb on - strand at 214.005 kb on - strand at 214.012 kb on - strand at 214.053 kb on + strand at 214.054 kb on - strand at 214.055 kb on + strand at 214.067 kb on + strand at 214.067 kb on + strand at 214.067 kb on + strand at 214.068 kb on - strand at 214.133 kb on + strand at 214.137 kb on + strand at 214.139 kb on + strand at 214.139 kb on + strand at 214.139 kb on + strand at 214.235 kb on + strand, within GFF1446 at 214.398 kb on + strand at 214.419 kb on + strand at 214.420 kb on - strand at 214.420 kb on - strand at 214.483 kb on + strand at 214.554 kb on + strand at 214.555 kb on - strand at 214.589 kb on + strand at 214.600 kb on + strand at 214.600 kb on + strand at 214.601 kb on - strand at 214.601 kb on - strand at 214.601 kb on - strand at 214.621 kb on + strand at 214.664 kb on + strand at 214.665 kb on - strand at 214.835 kb on + strand at 214.835 kb on + strand at 214.835 kb on + strand at 214.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 210,623 - GFF1444 0.36 -0.6 210,623 - GFF1444 0.36 -0.9 210,623 - GFF1444 0.36 -1.6 210,709 + GFF1444 0.43 -0.9 210,710 - GFF1444 0.43 -2.1 210,710 - GFF1444 0.43 -0.6 211,257 + GFF1444 0.85 -1.1 211,258 - GFF1444 0.86 -1.4 211,315 + -0.6 211,315 + +0.1 211,316 - +0.4 211,316 - +0.4 211,316 - +0.1 211,393 + +0.3 211,393 + -0.8 211,393 + +0.3 211,393 + -0.8 211,393 + -0.7 211,393 + -0.4 211,393 + -0.8 211,393 + -0.7 211,393 + -0.3 211,393 + +0.4 211,393 + -1.1 211,393 + +0.5 211,393 + -0.6 211,393 + -1.6 211,393 + -1.1 211,393 + +0.2 211,393 + +0.3 211,394 - +0.1 211,394 - +1.2 211,394 - -0.8 211,394 - +1.1 211,394 - +1.6 211,394 - +1.0 211,394 - +0.5 211,394 - -1.5 211,394 - +0.1 211,394 - +0.4 211,394 - -0.0 211,394 - -2.0 211,394 - +1.4 211,394 - -0.6 211,394 - -0.4 211,394 - +1.3 211,394 - -1.0 211,395 + +1.2 211,395 + -0.5 211,395 + -1.0 211,396 - -0.5 211,396 - -0.6 211,396 - -1.4 211,396 - -1.1 211,396 - +0.7 211,396 - +0.2 211,396 - +0.2 211,399 + -0.5 211,399 + +0.7 211,399 + -1.4 211,399 + -0.2 211,442 - +0.2 211,442 - -1.0 211,442 - -0.1 211,493 + +0.1 211,505 + +0.6 211,505 + -0.7 211,505 + -0.4 211,561 + -0.4 211,561 + -0.3 211,561 + -2.5 211,562 - -1.4 211,562 - -1.4 211,562 - -0.6 211,562 - -0.1 211,584 - +0.9 211,594 + -1.0 211,810 + +0.2 211,888 + GFF1445 0.12 -0.4 211,889 - GFF1445 0.12 -1.3 212,015 + GFF1445 0.17 -2.4 212,015 + GFF1445 0.17 +0.1 212,016 - GFF1445 0.17 -2.1 212,016 - GFF1445 0.17 +0.0 212,156 + GFF1445 0.23 +0.4 212,276 + GFF1445 0.28 -1.1 212,276 + GFF1445 0.28 +0.2 212,277 - GFF1445 0.28 -1.1 212,277 - GFF1445 0.28 -0.3 212,277 - GFF1445 0.28 -0.6 212,280 - GFF1445 0.28 -0.1 212,280 - GFF1445 0.28 +0.3 212,280 - GFF1445 0.28 +0.7 212,280 - GFF1445 0.28 +0.4 212,474 + GFF1445 0.36 -0.1 212,474 + GFF1445 0.36 -0.1 212,475 - GFF1445 0.36 -0.9 212,475 - GFF1445 0.36 +0.8 212,475 - GFF1445 0.36 -0.7 212,515 + GFF1445 0.38 +1.1 212,520 + GFF1445 0.38 -0.4 212,520 + GFF1445 0.38 +0.0 212,520 + GFF1445 0.38 +0.1 212,520 + GFF1445 0.38 -1.7 212,520 + GFF1445 0.38 -2.1 212,521 - GFF1445 0.38 +0.0 212,521 - GFF1445 0.38 -0.6 212,521 - GFF1445 0.38 -0.4 212,521 - GFF1445 0.38 -1.6 212,521 - GFF1445 0.38 +0.9 212,603 + GFF1445 0.42 +0.1 212,678 - GFF1445 0.45 -0.1 212,720 - GFF1445 0.46 -0.1 212,786 + GFF1445 0.49 +0.4 212,786 + GFF1445 0.49 -1.9 212,787 - GFF1445 0.49 -0.4 212,787 - GFF1445 0.49 -2.6 212,787 - GFF1445 0.49 -0.6 212,838 + GFF1445 0.51 +0.0 212,960 + GFF1445 0.56 +0.1 212,960 + GFF1445 0.56 -0.7 212,960 + GFF1445 0.56 -0.1 212,960 + GFF1445 0.56 -1.6 212,976 - GFF1445 0.57 -1.6 212,976 - GFF1445 0.57 -1.0 213,107 + GFF1445 0.63 -0.6 213,108 - GFF1445 0.63 -0.9 213,108 - GFF1445 0.63 -0.7 213,197 + GFF1445 0.66 -0.3 213,197 + GFF1445 0.66 -0.6 213,197 + GFF1445 0.66 +0.4 213,197 + GFF1445 0.66 +0.1 213,198 - GFF1445 0.66 +0.2 213,198 - GFF1445 0.66 -2.3 213,198 - GFF1445 0.66 -0.3 213,198 - GFF1445 0.66 -0.9 213,198 - GFF1445 0.66 -1.6 213,608 - GFF1445 0.83 -0.6 213,945 + -1.4 213,945 + +0.4 213,991 + -0.7 214,004 + -0.2 214,004 + -1.8 214,004 + -0.0 214,004 + +0.2 214,005 - +0.9 214,005 - +0.1 214,012 - -0.4 214,053 + +0.2 214,054 - +0.4 214,055 + -0.1 214,067 + -0.7 214,067 + +0.1 214,067 + -0.2 214,068 - -0.9 214,133 + +0.4 214,137 + -0.5 214,139 + -0.6 214,139 + -0.6 214,139 + +0.7 214,235 + GFF1446 0.30 -0.6 214,398 + +1.4 214,419 + -0.4 214,420 - +1.1 214,420 - +1.4 214,483 + -0.4 214,554 + +0.4 214,555 - +0.1 214,589 + -0.8 214,600 + -1.4 214,600 + -0.9 214,601 - +1.2 214,601 - +0.7 214,601 - +0.7 214,621 + +0.2 214,664 + +0.4 214,665 - +0.4 214,835 + +0.1 214,835 + +0.1 214,835 + +0.0 214,835 + +0.6
Or see this region's nucleotide sequence