Strain Fitness in Pseudomonas sp. DMC3 around GFF1237

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1235 and GFF1236 overlap by 4 nucleotidesGFF1236 and GFF1237 are separated by 202 nucleotidesGFF1237 and GFF1238 are separated by 135 nucleotides GFF1235 - hypothetical protein, at 588,718 to 589,248 GFF1235 GFF1236 - hypothetical protein, at 589,245 to 589,490 GFF1236 GFF1237 - HTH-type transcriptional regulator PgrR, at 589,693 to 590,595 GFF1237 GFF1238 - putative protein, at 590,731 to 591,759 GFF1238 Position (kb) 589 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1at 588.717 kb on + strandat 588.717 kb on + strandat 588.718 kb on - strandat 588.718 kb on - strandat 588.860 kb on + strand, within GFF1235at 588.860 kb on + strand, within GFF1235at 588.860 kb on + strand, within GFF1235at 588.860 kb on + strand, within GFF1235at 588.861 kb on - strand, within GFF1235at 588.861 kb on - strand, within GFF1235at 588.999 kb on + strand, within GFF1235at 589.000 kb on - strand, within GFF1235at 589.129 kb on + strand, within GFF1235at 589.130 kb on - strand, within GFF1235at 589.130 kb on - strand, within GFF1235at 589.130 kb on - strand, within GFF1235at 589.174 kb on + strand, within GFF1235at 589.174 kb on + strand, within GFF1235at 589.175 kb on - strand, within GFF1235at 589.177 kb on - strand, within GFF1235at 589.177 kb on - strand, within GFF1235at 589.433 kb on + strand, within GFF1236at 589.434 kb on - strand, within GFF1236at 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.695 kb on - strandat 589.772 kb on + strandat 589.773 kb on - strandat 589.773 kb on - strandat 589.773 kb on - strandat 589.868 kb on + strand, within GFF1237at 589.869 kb on - strand, within GFF1237at 589.869 kb on - strand, within GFF1237at 589.997 kb on + strand, within GFF1237at 589.998 kb on - strand, within GFF1237at 590.075 kb on + strand, within GFF1237at 590.075 kb on + strand, within GFF1237at 590.204 kb on + strand, within GFF1237at 590.216 kb on - strand, within GFF1237at 590.248 kb on + strand, within GFF1237at 590.248 kb on + strand, within GFF1237at 590.249 kb on - strand, within GFF1237at 590.249 kb on - strand, within GFF1237at 590.483 kb on - strand, within GFF1237at 590.483 kb on - strand, within GFF1237at 590.613 kb on + strandat 590.614 kb on - strandat 590.630 kb on + strandat 590.653 kb on - strandat 590.667 kb on + strandat 590.668 kb on - strandat 590.684 kb on + strandat 590.684 kb on + strandat 590.684 kb on + strandat 590.685 kb on - strandat 590.685 kb on - strandat 590.747 kb on + strandat 590.748 kb on - strandat 590.748 kb on - strandat 590.776 kb on - strandat 590.987 kb on - strand, within GFF1238at 590.987 kb on - strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.091 kb on + strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.092 kb on - strand, within GFF1238at 591.121 kb on + strand, within GFF1238at 591.250 kb on + strand, within GFF1238at 591.250 kb on + strand, within GFF1238at 591.250 kb on + strand, within GFF1238at 591.250 kb on + strand, within GFF1238at 591.250 kb on + strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.251 kb on - strand, within GFF1238at 591.373 kb on + strand, within GFF1238at 591.373 kb on + strand, within GFF1238at 591.373 kb on + strand, within GFF1238at 591.374 kb on - strand, within GFF1238at 591.374 kb on - strand, within GFF1238at 591.374 kb on - strand, within GFF1238at 591.374 kb on - strand, within GFF1238at 591.442 kb on + strand, within GFF1238at 591.539 kb on - strand, within GFF1238at 591.539 kb on - strand, within GFF1238at 591.539 kb on - strand, within GFF1238at 591.586 kb on - strand, within GFF1238at 591.586 kb on - strand, within GFF1238

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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588,717 + -1.0
588,717 + +0.2
588,718 - -0.5
588,718 - -0.4
588,860 + GFF1235 0.27 +0.0
588,860 + GFF1235 0.27 -0.6
588,860 + GFF1235 0.27 -1.0
588,860 + GFF1235 0.27 -0.8
588,861 - GFF1235 0.27 +1.7
588,861 - GFF1235 0.27 -0.5
588,999 + GFF1235 0.53 -0.7
589,000 - GFF1235 0.53 -3.4
589,129 + GFF1235 0.77 -0.6
589,130 - GFF1235 0.78 -0.4
589,130 - GFF1235 0.78 -0.2
589,130 - GFF1235 0.78 -0.2
589,174 + GFF1235 0.86 -0.1
589,174 + GFF1235 0.86 -0.4
589,175 - GFF1235 0.86 -2.2
589,177 - GFF1235 0.86 -0.1
589,177 - GFF1235 0.86 -0.2
589,433 + GFF1236 0.76 -0.2
589,434 - GFF1236 0.77 +1.0
589,650 + -0.4
589,650 + -0.0
589,650 + -0.3
589,650 + +0.1
589,650 + +0.8
589,650 + +0.6
589,651 - -0.5
589,651 - -0.5
589,651 - +0.5
589,651 - +0.2
589,651 - -0.7
589,651 - -0.6
589,651 - +0.5
589,695 - -1.8
589,772 + -0.1
589,773 - +0.0
589,773 - -0.1
589,773 - -0.1
589,868 + GFF1237 0.19 +0.3
589,869 - GFF1237 0.19 -0.8
589,869 - GFF1237 0.19 -0.5
589,997 + GFF1237 0.34 +0.1
589,998 - GFF1237 0.34 +0.5
590,075 + GFF1237 0.42 -2.4
590,075 + GFF1237 0.42 +0.1
590,204 + GFF1237 0.57 -1.2
590,216 - GFF1237 0.58 -0.5
590,248 + GFF1237 0.61 +1.5
590,248 + GFF1237 0.61 +0.9
590,249 - GFF1237 0.62 +0.3
590,249 - GFF1237 0.62 -1.2
590,483 - GFF1237 0.87 -1.5
590,483 - GFF1237 0.87 +0.7
590,613 + -0.2
590,614 - +1.0
590,630 + +0.5
590,653 - -0.3
590,667 + -0.2
590,668 - +0.1
590,684 + +0.3
590,684 + -0.7
590,684 + +0.6
590,685 - -0.9
590,685 - -1.7
590,747 + -0.7
590,748 - +1.1
590,748 - -0.7
590,776 - +1.1
590,987 - GFF1238 0.25 +0.3
590,987 - GFF1238 0.25 +0.6
591,091 + GFF1238 0.35 -0.3
591,091 + GFF1238 0.35 -0.7
591,091 + GFF1238 0.35 +0.9
591,091 + GFF1238 0.35 -0.7
591,091 + GFF1238 0.35 -0.8
591,091 + GFF1238 0.35 -0.0
591,091 + GFF1238 0.35 -0.5
591,092 - GFF1238 0.35 -0.5
591,092 - GFF1238 0.35 +0.3
591,092 - GFF1238 0.35 -0.4
591,092 - GFF1238 0.35 -1.4
591,092 - GFF1238 0.35 -0.7
591,092 - GFF1238 0.35 +0.2
591,092 - GFF1238 0.35 -0.3
591,092 - GFF1238 0.35 +0.4
591,092 - GFF1238 0.35 +0.3
591,121 + GFF1238 0.38 +0.2
591,250 + GFF1238 0.50 -0.2
591,250 + GFF1238 0.50 +0.5
591,250 + GFF1238 0.50 +0.7
591,250 + GFF1238 0.50 -0.8
591,250 + GFF1238 0.50 -0.7
591,251 - GFF1238 0.51 -0.2
591,251 - GFF1238 0.51 +0.6
591,251 - GFF1238 0.51 +0.0
591,251 - GFF1238 0.51 +0.9
591,251 - GFF1238 0.51 -0.3
591,251 - GFF1238 0.51 +0.3
591,251 - GFF1238 0.51 +0.2
591,373 + GFF1238 0.62 +1.2
591,373 + GFF1238 0.62 -0.3
591,373 + GFF1238 0.62 -0.9
591,374 - GFF1238 0.62 -0.3
591,374 - GFF1238 0.62 +0.6
591,374 - GFF1238 0.62 +0.1
591,374 - GFF1238 0.62 -0.6
591,442 + GFF1238 0.69 +1.0
591,539 - GFF1238 0.79 -0.4
591,539 - GFF1238 0.79 -0.5
591,539 - GFF1238 0.79 -0.1
591,586 - GFF1238 0.83 -0.6
591,586 - GFF1238 0.83 -0.3

Or see this region's nucleotide sequence