Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03150

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03149 and MPMX26_03150 are separated by 454 nucleotidesMPMX26_03150 and MPMX26_03151 are separated by 50 nucleotidesMPMX26_03151 and MPMX26_03152 are separated by 161 nucleotides MPMX26_03149: MPMX26_03149 - hypothetical protein, at 5,974 to 6,504 _03149 MPMX26_03150: MPMX26_03150 - ATP-dependent RecD-like DNA helicase, at 6,959 to 9,877 _03150 MPMX26_03151: MPMX26_03151 - hypothetical protein, at 9,928 to 10,365 _03151 MPMX26_03152: MPMX26_03152 - IS6 family transposase IS1006, at 10,527 to 11,231 _03152 Position (kb) 6 7 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5.992 kb on - strandat 6.125 kb on - strand, within MPMX26_03149at 6.508 kb on - strandat 6.992 kb on + strandat 7.020 kb on + strandat 7.027 kb on + strandat 7.052 kb on + strandat 7.052 kb on + strandat 7.168 kb on + strandat 7.168 kb on + strandat 7.214 kb on + strandat 7.276 kb on + strand, within MPMX26_03150at 7.362 kb on + strand, within MPMX26_03150at 7.377 kb on + strand, within MPMX26_03150at 7.379 kb on + strand, within MPMX26_03150at 7.400 kb on + strand, within MPMX26_03150at 7.430 kb on + strand, within MPMX26_03150at 7.430 kb on + strand, within MPMX26_03150at 7.430 kb on + strand, within MPMX26_03150at 7.469 kb on + strand, within MPMX26_03150at 7.520 kb on + strand, within MPMX26_03150at 7.556 kb on + strand, within MPMX26_03150at 7.556 kb on + strand, within MPMX26_03150at 7.585 kb on + strand, within MPMX26_03150at 7.690 kb on + strand, within MPMX26_03150at 7.753 kb on + strand, within MPMX26_03150at 7.753 kb on + strand, within MPMX26_03150at 7.781 kb on + strand, within MPMX26_03150at 7.844 kb on + strand, within MPMX26_03150at 8.080 kb on + strand, within MPMX26_03150at 8.261 kb on + strand, within MPMX26_03150at 8.514 kb on - strand, within MPMX26_03150at 8.986 kb on + strand, within MPMX26_03150at 8.986 kb on + strand, within MPMX26_03150at 9.133 kb on + strand, within MPMX26_03150at 9.215 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.506 kb on + strand, within MPMX26_03150at 9.512 kb on + strand, within MPMX26_03150at 9.512 kb on + strand, within MPMX26_03150at 9.512 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.525 kb on + strand, within MPMX26_03150at 9.549 kb on + strand, within MPMX26_03150at 9.556 kb on + strand, within MPMX26_03150at 9.682 kb on + strandat 9.682 kb on + strandat 9.682 kb on + strandat 9.682 kb on + strandat 9.694 kb on + strandat 9.701 kb on + strandat 9.742 kb on + strandat 9.764 kb on - strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 10.001 kb on + strand, within MPMX26_03151at 10.053 kb on + strand, within MPMX26_03151at 10.174 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.286 kb on + strand, within MPMX26_03151at 10.286 kb on - strand, within MPMX26_03151at 10.340 kb on + strandat 10.347 kb on + strandat 10.412 kb on - strandat 10.478 kb on - strandat 10.789 kb on + strand, within MPMX26_03152at 10.789 kb on + strand, within MPMX26_03152at 10.794 kb on + strand, within MPMX26_03152

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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5,992 - +1.9
6,125 - MPMX26_03149 0.28 -0.6
6,508 - -2.1
6,992 + +0.6
7,020 + +2.2
7,027 + +0.1
7,052 + +1.1
7,052 + +1.0
7,168 + +1.2
7,168 + +0.9
7,214 + -1.0
7,276 + MPMX26_03150 0.11 -0.7
7,362 + MPMX26_03150 0.14 +0.9
7,377 + MPMX26_03150 0.14 -1.5
7,379 + MPMX26_03150 0.14 +3.0
7,400 + MPMX26_03150 0.15 -0.5
7,430 + MPMX26_03150 0.16 -0.2
7,430 + MPMX26_03150 0.16 +0.8
7,430 + MPMX26_03150 0.16 -0.0
7,469 + MPMX26_03150 0.17 -0.4
7,520 + MPMX26_03150 0.19 -0.8
7,556 + MPMX26_03150 0.20 -1.9
7,556 + MPMX26_03150 0.20 +1.3
7,585 + MPMX26_03150 0.21 +2.3
7,690 + MPMX26_03150 0.25 +0.7
7,753 + MPMX26_03150 0.27 -1.3
7,753 + MPMX26_03150 0.27 -2.0
7,781 + MPMX26_03150 0.28 +1.2
7,844 + MPMX26_03150 0.30 +1.0
8,080 + MPMX26_03150 0.38 +2.3
8,261 + MPMX26_03150 0.45 +2.3
8,514 - MPMX26_03150 0.53 +4.2
8,986 + MPMX26_03150 0.69 +0.4
8,986 + MPMX26_03150 0.69 +1.5
9,133 + MPMX26_03150 0.74 +0.7
9,215 + MPMX26_03150 0.77 +0.2
9,463 + MPMX26_03150 0.86 -0.2
9,463 + MPMX26_03150 0.86 -0.5
9,463 + MPMX26_03150 0.86 -0.4
9,463 + MPMX26_03150 0.86 +0.3
9,506 + MPMX26_03150 0.87 -0.4
9,512 + MPMX26_03150 0.87 +0.7
9,512 + MPMX26_03150 0.87 -0.3
9,512 + MPMX26_03150 0.87 -1.4
9,520 + MPMX26_03150 0.88 +2.7
9,520 + MPMX26_03150 0.88 -1.2
9,520 + MPMX26_03150 0.88 +2.7
9,520 + MPMX26_03150 0.88 +1.7
9,525 + MPMX26_03150 0.88 +1.4
9,549 + MPMX26_03150 0.89 +1.9
9,556 + MPMX26_03150 0.89 -0.1
9,682 + +0.3
9,682 + -1.7
9,682 + -0.1
9,682 + +0.6
9,694 + +0.0
9,701 + +0.2
9,742 + -1.0
9,764 - +4.7
9,970 + +3.3
9,970 + -0.4
9,970 + -1.0
9,970 + +2.7
9,970 + +1.4
9,970 + -0.4
10,001 + MPMX26_03151 0.17 +2.1
10,053 + MPMX26_03151 0.29 +0.5
10,174 + MPMX26_03151 0.56 -0.2
10,194 + MPMX26_03151 0.61 +0.9
10,194 + MPMX26_03151 0.61 -0.6
10,194 + MPMX26_03151 0.61 +0.3
10,194 + MPMX26_03151 0.61 +0.7
10,194 + MPMX26_03151 0.61 +1.3
10,286 + MPMX26_03151 0.82 +0.1
10,286 - MPMX26_03151 0.82 +1.8
10,340 + -0.5
10,347 + +0.1
10,412 - +2.7
10,478 - +1.3
10,789 + MPMX26_03152 0.37 -0.9
10,789 + MPMX26_03152 0.37 -0.3
10,794 + MPMX26_03152 0.38 +1.3

Or see this region's nucleotide sequence