Strain Fitness in Escherichia fergusonii Becca around EFB2_03357

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,512,828	+		EFB2_03356	0.33	-0.7
3,512,828	+		EFB2_03356	0.33	-1.4
3,512,828	+		EFB2_03356	0.33	-0.3
3,512,828	+		EFB2_03356	0.33	+0.1
3,512,828	+		EFB2_03356	0.33	+0.6
3,512,828	+		EFB2_03356	0.33	+1.9
3,512,828	+		EFB2_03356	0.33	-0.6
3,512,828	+		EFB2_03356	0.33	-0.4
3,512,829	-		EFB2_03356	0.33	-0.6
3,512,829	-		EFB2_03356	0.33	-0.5
3,512,829	-		EFB2_03356	0.33	+0.5
3,512,833	+		EFB2_03356	0.33	-0.2
3,512,833	+		EFB2_03356	0.33	-0.7
3,512,833	+		EFB2_03356	0.33	+0.1
3,512,833	+		EFB2_03356	0.33	-1.6
3,512,833	+		EFB2_03356	0.33	+0.2
3,512,833	+		EFB2_03356	0.33	-1.9
3,512,833	+		EFB2_03356	0.33	-1.0
3,512,833	+		EFB2_03356	0.33	-2.6
3,512,833	+		EFB2_03356	0.33	-0.8
3,512,833	+		EFB2_03356	0.33	+0.9
3,512,833	+		EFB2_03356	0.33	-1.3
3,512,833	+		EFB2_03356	0.33	+0.8
3,512,834	-		EFB2_03356	0.33	-2.6
3,512,834	-		EFB2_03356	0.33	+1.0
3,512,834	-		EFB2_03356	0.33	-0.2
3,512,834	-		EFB2_03356	0.33	+1.6
3,512,834	-		EFB2_03356	0.33	-0.2
3,512,834	-		EFB2_03356	0.33	-2.1
3,512,834	-		EFB2_03356	0.33	+0.1
3,512,834	-		EFB2_03356	0.33	+0.3
3,512,834	-		EFB2_03356	0.33	-0.3
3,512,861	+		EFB2_03356	0.36	+0.9
3,512,912	-		EFB2_03356	0.41	-1.9
3,512,948	+		EFB2_03356	0.44	-2.0
3,512,948	+		EFB2_03356	0.44	-0.2
3,512,948	+		EFB2_03356	0.44	-1.0
3,512,948	+		EFB2_03356	0.44	+1.1
3,512,948	+		EFB2_03356	0.44	-0.6
3,512,948	+		EFB2_03356	0.44	-1.0
3,512,949	-		EFB2_03356	0.44	-0.1
3,512,949	-		EFB2_03356	0.44	-1.1
3,512,949	-		EFB2_03356	0.44	+0.6
3,512,949	-		EFB2_03356	0.44	+0.7
3,512,949	-		EFB2_03356	0.44	-1.0
3,512,949	-		EFB2_03356	0.44	-0.4
3,512,979	+		EFB2_03356	0.47	-2.4
3,512,979	+		EFB2_03356	0.47	+0.5
3,512,980	-		EFB2_03356	0.47	-0.1
3,512,980	-		EFB2_03356	0.47	-0.5
3,512,980	-		EFB2_03356	0.47	-1.6
3,513,028	+		EFB2_03356	0.52	+0.9
3,513,028	+		EFB2_03356	0.52	-0.6
3,513,043	+		EFB2_03356	0.53	+1.2
3,513,044	-		EFB2_03356	0.53	-2.1
3,513,044	-		EFB2_03356	0.53	+0.1
3,513,044	-		EFB2_03356	0.53	+1.0
3,513,044	-		EFB2_03356	0.53	-0.2
3,513,068	+		EFB2_03356	0.56	+1.1
3,513,068	+		EFB2_03356	0.56	-0.5
3,513,069	-		EFB2_03356	0.56	+0.5
3,513,093	-		EFB2_03356	0.58	-0.4
3,513,115	-		EFB2_03356	0.60	+2.1
3,513,115	-		EFB2_03356	0.60	-3.3
3,513,127	+		EFB2_03356	0.61	-1.1
3,513,127	+		EFB2_03356	0.61	-0.2
3,513,127	+		EFB2_03356	0.61	-0.2
3,513,127	+		EFB2_03356	0.61	-0.6
3,513,128	-		EFB2_03356	0.61	-2.0
3,513,128	-		EFB2_03356	0.61	+1.5
3,513,128	-		EFB2_03356	0.61	+0.7
3,513,128	-		EFB2_03356	0.61	+1.1
3,513,128	-		EFB2_03356	0.61	+0.3
3,513,128	-		EFB2_03356	0.61	-3.1
3,513,259	+		EFB2_03356	0.74	+0.8
3,513,278	+		EFB2_03356	0.76	-1.6
3,513,278	+		EFB2_03356	0.76	-0.2
3,513,286	+		EFB2_03356	0.77	-0.2
3,513,286	+		EFB2_03356	0.77	-0.4
3,513,286	+		EFB2_03356	0.77	-1.2
3,513,286	+		EFB2_03356	0.77	-0.9
3,513,286	+		EFB2_03356	0.77	-0.1
3,513,286	+		EFB2_03356	0.77	+1.0
3,513,286	+		EFB2_03356	0.77	-0.2
3,513,286	+		EFB2_03356	0.77	+0.2
3,513,286	+		EFB2_03356	0.77	-1.9
3,513,286	+		EFB2_03356	0.77	+2.8
3,513,286	+		EFB2_03356	0.77	+2.3
3,513,286	+		EFB2_03356	0.77	-0.3
3,513,287	-		EFB2_03356	0.77	-1.9
3,513,287	-		EFB2_03356	0.77	+0.4
3,513,287	-		EFB2_03356	0.77	-2.8
3,513,287	-		EFB2_03356	0.77	+0.7
3,513,287	-		EFB2_03356	0.77	-1.3
3,513,287	-		EFB2_03356	0.77	+1.8
3,513,287	-		EFB2_03356	0.77	+0.2
3,513,287	-		EFB2_03356	0.77	-1.0
3,513,287	-		EFB2_03356	0.77	-1.0
3,513,287	-		EFB2_03356	0.77	-2.1
3,513,287	-		EFB2_03356	0.77	-0.3
3,513,287	-		EFB2_03356	0.77	+1.2
3,513,337	+		EFB2_03356	0.82	-1.8
3,513,337	+		EFB2_03356	0.82	-1.9
3,513,337	+		EFB2_03356	0.82	+0.4
3,513,338	-		EFB2_03356	0.82	-0.3
3,513,382	+		EFB2_03356	0.86	-0.7
3,513,383	-		EFB2_03356	0.86	-1.6
3,513,384	+		EFB2_03356	0.86	-0.7
3,513,384	+		EFB2_03356	0.86	-0.8
3,513,384	+		EFB2_03356	0.86	-2.6
3,513,384	+		EFB2_03356	0.86	+1.1
3,513,384	+		EFB2_03356	0.86	+2.6
3,513,384	+		EFB2_03356	0.86	+0.0
3,513,384	+		EFB2_03356	0.86	+1.3
3,513,384	+		EFB2_03356	0.86	+0.4
3,513,384	+		EFB2_03356	0.86	+0.9
3,513,384	+		EFB2_03356	0.86	-0.0
3,513,384	+		EFB2_03356	0.86	+0.5
3,513,384	+		EFB2_03356	0.86	+0.1
3,513,384	+		EFB2_03356	0.86	-0.9
3,513,384	+		EFB2_03356	0.86	-1.3
3,513,385	-		EFB2_03356	0.86	+0.9
3,513,385	-		EFB2_03356	0.86	+0.4
3,513,385	-		EFB2_03356	0.86	+2.9
3,513,385	-		EFB2_03356	0.86	-0.4
3,513,385	-		EFB2_03356	0.86	+1.7
3,513,385	-		EFB2_03356	0.86	+1.9
3,513,387	+		EFB2_03356	0.86	-0.8
3,513,387	+		EFB2_03356	0.86	+2.1
3,513,387	+		EFB2_03356	0.86	-0.9
3,513,387	+		EFB2_03356	0.86	+0.5
3,513,387	+		EFB2_03356	0.86	+0.7
3,513,388	-		EFB2_03356	0.86	-1.8
3,513,388	-		EFB2_03356	0.86	+1.3
3,513,388	-		EFB2_03356	0.86	-3.7
3,513,388	-		EFB2_03356	0.86	-0.4
3,513,388	-		EFB2_03356	0.86	-1.9
3,513,388	-		EFB2_03356	0.86	-2.2
3,513,388	-		EFB2_03356	0.86	+1.0
3,513,388	-		EFB2_03356	0.86	+3.0
3,513,409	+		EFB2_03356	0.88	+1.8
3,513,409	+		EFB2_03356	0.88	+1.4
3,513,410	-		EFB2_03356	0.89	+0.7
3,513,419	+		EFB2_03356	0.89	-2.6
3,513,419	+		EFB2_03356	0.89	-0.8
3,513,419	+		EFB2_03356	0.89	-1.7
3,513,420	-		EFB2_03356	0.89	+1.1
3,513,420	-		EFB2_03356	0.89	+1.0
3,513,420	-		EFB2_03356	0.89	+0.6
3,513,431	+				-0.7
3,513,431	+				-1.0
3,513,432	-				+0.2
3,513,444	+				-2.9
3,513,447	+				-1.9
3,513,447	+				+0.8
3,513,447	+				-0.9
3,513,447	+				-1.3
3,513,495	+				+0.4
3,513,496	-				+0.9
3,513,496	-				+0.2
3,513,532	+				-1.8
3,513,532	+				+1.6
3,513,532	+				-0.2
3,513,533	-				-2.4
3,513,533	-				+1.5
3,513,546	-				-1.2
3,513,570	+				-0.7
3,513,610	-				+0.2
3,513,610	-				+1.6
3,513,615	-				-2.6
3,513,654	+				-0.7
3,513,654	+				-0.2
3,513,655	-				+0.5
3,513,658	+				-2.6
3,513,658	+				-0.2
3,513,658	+				-0.5
3,513,659	-				-0.2
3,513,659	-				+0.3
3,513,659	-				+2.7
3,513,659	-				-0.9
3,513,689	+				+1.8
3,513,689	+				+1.0
3,513,690	-				-1.0
3,513,702	+				-2.5
3,513,702	+				+0.7
3,513,702	+				+1.1
3,513,702	+				-0.1
3,513,702	+				-0.2
3,513,702	+				-1.9
3,513,702	+				+3.4
3,513,702	+				-0.2
3,513,702	+				-0.4
3,513,702	+				+1.3
3,513,703	-				-0.2
3,513,703	-				-1.9
3,513,703	-				-0.2
3,513,703	-				+0.4
3,513,703	-				-3.4
3,513,712	+				-0.3
3,513,713	-				+1.0
3,513,713	-				-2.8
3,513,713	-				-0.6
3,513,730	+				-2.7
3,513,730	+				+2.5
3,513,730	+				-0.5
3,513,730	+				+1.1
3,513,730	+				-0.6
3,513,730	+				-0.3
3,513,730	+				+1.5
3,513,730	+				-0.7
3,513,730	+				+1.0
3,513,731	-				+0.2
3,513,731	-				+1.2
3,513,731	-				-0.2
3,513,731	-				-1.0
3,513,731	-				+0.9
3,513,731	-				+0.3
3,513,790	-				-2.6
3,513,894	-				-0.3
3,513,894	-				+1.1
3,513,904	-				-2.7
3,513,904	-				-0.8
3,513,904	-				-0.0
3,514,003	-				+0.7
3,514,018	-				+0.4
3,514,035	-				+0.6
3,514,198	-				-1.2
3,514,210	-				+1.1
3,514,213	-				+1.7
3,514,213	-				-4.4
3,514,213	-				-1.0
3,514,213	-				-0.8
3,514,213	-				+0.7
3,514,213	-				+0.6
3,514,213	-				+1.6
3,514,213	-				+0.3
3,514,220	-				-1.5
3,514,220	-				-1.6
3,514,220	-				-0.0
3,514,220	-				-3.8
3,514,220	-				+2.5
3,514,220	-				+1.2
3,514,220	-				+0.7
3,514,240	-				-2.6
3,514,240	-				+0.0
3,514,240	-				-3.5
3,514,240	-				+0.0
3,514,240	-				-2.4
3,514,240	-				-0.1
3,514,240	-				+0.4
3,514,240	-				-0.2
3,514,244	-				+1.1
3,514,244	-				-0.6
3,514,244	-				-1.6
3,514,244	-				-1.3
3,514,406	-				-2.3
3,514,406	-				+0.9
3,514,406	-				+0.7
3,514,406	-				-1.8
3,514,406	-				-1.6
3,514,406	-				-0.3
3,514,406	-				-0.4
3,514,406	-				+0.9
3,514,415	-				-0.4
3,514,415	-				-2.1
3,514,418	-				-2.8
3,514,418	-				-1.0
3,514,418	-				+1.5
3,514,418	-				-0.8
3,514,418	-				-0.0
3,514,418	-				-2.5
3,514,418	-				-1.3
3,514,418	-				-1.6
3,514,418	-				-0.7
3,514,418	-				+0.8
3,514,418	-				-1.6
3,514,418	-				+0.8
3,514,418	-				+0.6
3,514,418	-				+2.4
3,514,424	-				+1.7
3,514,424	-				+1.4
3,514,424	-				-0.6
3,514,424	-				+0.1
3,514,424	-				-1.0
3,514,424	-				-0.2
3,514,424	-				+0.0
3,514,424	-				-0.1
3,514,424	-				+0.4
3,514,424	-				+1.0
3,514,424	-				-0.4
3,514,424	-				+1.3
3,514,424	-				-1.6
3,514,424	-				+1.3
3,514,424	-				-1.5
3,514,424	-				-0.5
3,514,424	-				+0.6
3,514,424	-				+0.4
3,514,424	-				+0.5
3,514,424	-				-2.4
3,514,424	-				-0.0
3,514,424	-				+1.1
3,514,424	-				+0.1
3,514,424	-				-0.4
3,514,424	-				-2.2
3,514,424	-				-1.7
3,514,424	-				+1.0
3,514,424	-				-0.7
3,514,424	-				-0.4
3,514,424	-				-1.0
3,514,428	-				-2.2
3,514,428	-				-1.7
3,514,428	-				-0.6
3,514,428	-				-1.9
3,514,428	-				-1.6
3,514,428	-				-1.4
3,514,428	-				-0.5
3,514,428	-				-2.3
3,514,428	-				-1.0
3,514,428	-				-2.5
3,514,428	-				+0.2
3,514,428	-				-0.3
3,514,428	-				+2.1
3,514,428	-				+0.5
3,514,428	-				-0.2
3,514,428	-				+0.6
3,514,428	-				+0.3
3,514,428	-				-2.6
3,514,428	-				-0.9
3,514,428	-				-0.5
3,514,428	-				+0.1
3,514,428	-				-1.4
3,514,428	-				+0.2
3,514,428	-				+0.9
3,514,428	-				+3.6
3,514,428	-				-2.1
3,514,428	-				+0.3
3,514,428	-				-0.7
3,514,428	-				+0.7
3,514,428	-				+0.9
3,514,428	-				-0.3
3,514,428	-				-1.9
3,514,428	-				+0.4
3,514,433	-				+0.1
3,514,561	-				+0.6
3,514,563	-				+2.4
3,514,603	+				+0.0
3,514,603	+				+0.7
3,514,603	+				-1.6
3,514,603	+				-0.4
3,514,603	+				-0.5
3,514,603	+				-1.3
3,514,603	+				-3.0
3,514,604	-				-2.7
3,514,604	-				+0.3
3,514,604	-				-0.9
3,514,604	-				+0.1
3,514,604	-				-0.2
3,514,604	-				+0.1
3,514,620	+				-0.2
3,514,620	+				-0.7
3,514,620	+				-1.3
3,514,621	-				-0.7
3,514,621	-				+0.9
3,514,621	-				-0.2
3,514,621	-				-0.8
3,514,646	+				+1.9
3,514,646	+				+1.2
3,514,646	+				+1.3
3,514,646	+				-2.4
3,514,647	-				-1.7
3,514,647	-				-1.5
3,514,647	-				-1.9
3,514,669	+				+1.1
3,514,669	+				+2.4
3,514,669	+				-0.8
3,514,669	+				+1.8
3,514,669	+				+0.0
3,514,669	+				-1.1
3,514,669	+				+0.0
3,514,669	+				+4.9
3,514,669	+				+1.0
3,514,669	+				+1.4
3,514,670	-				-0.5
3,514,670	-				+0.3
3,514,676	+				-1.4
3,514,676	+				+3.0
3,514,676	+				+0.6
3,514,676	+				+1.3
3,514,676	+				-3.0
3,514,676	+				+1.0
3,514,676	+				-1.1
3,514,676	+				+0.2
3,514,676	+				+2.1
3,514,676	+				-0.8
3,514,677	-				-0.1
3,514,677	-				-0.0
3,514,677	-				+0.1
3,514,677	-				+0.1
3,514,677	-				+0.5
3,514,677	-				-2.8
3,514,677	-				-0.4
3,514,677	-				+0.6
3,514,677	-				-2.8
3,514,677	-				-2.3
3,514,677	-				+0.7
3,514,677	-				-0.2
3,514,677	-				+0.6
3,514,677	-				-0.3
3,514,677	-				-2.2
3,514,707	+				+2.5
3,514,719	+				-1.3
3,514,719	+				+1.9
3,514,719	+				+1.5
3,514,727	+				+0.3
3,514,727	+				+0.6
3,514,727	+				-2.7
3,514,727	+				-0.4
3,514,727	+				+1.0
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3,514,727	+				-0.9
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3,514,728	-				+0.9
3,514,728	-				-0.2
3,514,728	-				-1.3
3,514,728	-				+0.4
3,514,728	-				+1.9
3,514,728	-				-1.7
3,514,728	-				+0.5
3,514,728	-				-1.0
3,514,728	-				+0.3
3,514,728	-				-0.5
3,514,731	+				-2.5
3,514,731	+				+1.6
3,514,731	+				+1.7
3,514,731	+				+0.1
3,514,732	-				-1.0
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3,514,732	-				+0.4
3,514,732	-				-0.1
3,514,732	-				-1.4
3,514,737	+				+2.0
3,514,738	-				+1.1
3,514,738	-				-0.5
3,514,748	+				-0.3
3,514,748	+				+0.3
3,514,749	-				-0.8
3,514,749	-				-2.7
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3,514,749	-				-0.8
3,514,750	+				+0.6
3,514,750	+				-1.2
3,514,751	-				-1.9
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3,514,803	+		EFB2_03364	0.16	+0.1
3,514,803	+		EFB2_03364	0.16	-0.9
3,514,803	+		EFB2_03364	0.16	-0.9
3,514,803	+		EFB2_03364	0.16	-0.4
3,514,803	+		EFB2_03364	0.16	-1.6
3,514,804	-		EFB2_03364	0.16	+0.3
3,514,804	-		EFB2_03364	0.16	-2.6
3,514,839	-		EFB2_03364	0.21	+0.1
3,514,839	-		EFB2_03364	0.21	-1.0
3,514,862	+		EFB2_03364	0.24	-1.2
3,514,862	+		EFB2_03364	0.24	-2.4
3,514,863	-		EFB2_03364	0.24	+0.2
3,514,863	-		EFB2_03364	0.24	-3.5
3,514,863	-		EFB2_03364	0.24	+2.1
3,514,865	+		EFB2_03364	0.24	+2.2
3,514,865	+		EFB2_03364	0.24	+1.0
3,514,866	-		EFB2_03364	0.24	+0.8
3,514,866	-		EFB2_03364	0.24	-1.1