Strain Fitness in Escherichia fergusonii Becca around EFB2_03340

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,496,220	+		EFB2_03339	0.20	-0.2
3,496,221	-		EFB2_03339	0.20	-0.7
3,496,288	+		EFB2_03339	0.27	-2.0
3,496,288	+		EFB2_03339	0.27	-1.6
3,496,289	-		EFB2_03339	0.27	-0.1
3,496,290	+		EFB2_03339	0.27	-0.9
3,496,290	+		EFB2_03339	0.27	-0.4
3,496,290	+		EFB2_03339	0.27	-0.9
3,496,291	-		EFB2_03339	0.27	+2.1
3,496,291	-		EFB2_03339	0.27	-1.4
3,496,314	-		EFB2_03339	0.29	-0.4
3,496,319	+		EFB2_03339	0.30	-1.3
3,496,320	-		EFB2_03339	0.30	-0.4
3,496,320	-		EFB2_03339	0.30	-1.9
3,496,361	+		EFB2_03339	0.34	+1.1
3,496,361	+		EFB2_03339	0.34	-0.4
3,496,361	+		EFB2_03339	0.34	-0.2
3,496,361	+		EFB2_03339	0.34	-1.0
3,496,362	-		EFB2_03339	0.34	-1.3
3,496,413	+		EFB2_03339	0.39	-0.2
3,496,413	+		EFB2_03339	0.39	-1.8
3,496,413	+		EFB2_03339	0.39	+0.6
3,496,414	-		EFB2_03339	0.39	+0.4
3,496,432	-		EFB2_03339	0.41	+0.8
3,496,448	-		EFB2_03339	0.43	-2.2
3,496,473	+		EFB2_03339	0.45	-1.0
3,496,474	-		EFB2_03339	0.45	+0.6
3,496,478	+		EFB2_03339	0.46	+1.1
3,496,479	-		EFB2_03339	0.46	-0.9
3,496,479	-		EFB2_03339	0.46	+4.5
3,496,557	-		EFB2_03339	0.54	-0.7
3,496,581	+		EFB2_03339	0.56	-0.7
3,496,582	-		EFB2_03339	0.56	+0.9
3,496,601	+		EFB2_03339	0.58	-0.9
3,496,601	+		EFB2_03339	0.58	+1.7
3,496,601	+		EFB2_03339	0.58	-2.6
3,496,601	+		EFB2_03339	0.58	-1.3
3,496,601	+		EFB2_03339	0.58	+0.9
3,496,601	+		EFB2_03339	0.58	-3.4
3,496,601	+		EFB2_03339	0.58	-0.9
3,496,601	+		EFB2_03339	0.58	+0.6
3,496,601	+		EFB2_03339	0.58	+0.2
3,496,601	+		EFB2_03339	0.58	-1.8
3,496,601	+		EFB2_03339	0.58	+0.3
3,496,601	+		EFB2_03339	0.58	+0.3
3,496,601	+		EFB2_03339	0.58	-1.8
3,496,601	+		EFB2_03339	0.58	-2.2
3,496,601	+		EFB2_03339	0.58	-0.2
3,496,601	+		EFB2_03339	0.58	-0.2
3,496,601	+		EFB2_03339	0.58	-2.0
3,496,601	+		EFB2_03339	0.58	+0.4
3,496,602	-		EFB2_03339	0.58	+0.1
3,496,602	-		EFB2_03339	0.58	-2.0
3,496,602	-		EFB2_03339	0.58	-1.8
3,496,602	-		EFB2_03339	0.58	-0.2
3,496,602	-		EFB2_03339	0.58	-0.4
3,496,602	-		EFB2_03339	0.58	-0.4
3,496,602	-		EFB2_03339	0.58	-0.2
3,496,602	-		EFB2_03339	0.58	-2.6
3,496,602	-		EFB2_03339	0.58	+1.7
3,496,602	-		EFB2_03339	0.58	-1.8
3,496,602	-		EFB2_03339	0.58	-1.9
3,496,602	-		EFB2_03339	0.58	+1.3
3,496,602	-		EFB2_03339	0.58	+0.3
3,496,602	-		EFB2_03339	0.58	-1.3
3,496,602	-		EFB2_03339	0.58	-1.7
3,496,602	-		EFB2_03339	0.58	-0.1
3,496,619	+		EFB2_03339	0.60	-1.7
3,496,619	+		EFB2_03339	0.60	+0.4
3,496,620	-		EFB2_03339	0.60	-0.4
3,496,620	-		EFB2_03339	0.60	-2.2
3,496,620	-		EFB2_03339	0.60	-0.4
3,496,695	+		EFB2_03339	0.67	-0.2
3,496,715	+		EFB2_03339	0.69	-0.4
3,496,715	+		EFB2_03339	0.69	-1.2
3,496,715	+		EFB2_03339	0.69	+0.6
3,496,715	+		EFB2_03339	0.69	-1.5
3,496,715	+		EFB2_03339	0.69	-0.5
3,496,715	+		EFB2_03339	0.69	+0.9
3,496,715	+		EFB2_03339	0.69	-1.9
3,496,715	+		EFB2_03339	0.69	+0.4
3,496,715	+		EFB2_03339	0.69	-2.5
3,496,716	-		EFB2_03339	0.70	-0.7
3,496,716	-		EFB2_03339	0.70	+1.7
3,496,716	-		EFB2_03339	0.70	-1.8
3,496,716	-		EFB2_03339	0.70	-0.9
3,496,716	-		EFB2_03339	0.70	-0.2
3,496,716	-		EFB2_03339	0.70	-1.0
3,496,716	-		EFB2_03339	0.70	-2.2
3,496,716	-		EFB2_03339	0.70	-0.4
3,496,717	+		EFB2_03339	0.70	+1.0
3,496,717	+		EFB2_03339	0.70	-0.7
3,496,717	+		EFB2_03339	0.70	-3.3
3,496,717	+		EFB2_03339	0.70	-2.6
3,496,717	+		EFB2_03339	0.70	-0.2
3,496,717	+		EFB2_03339	0.70	-2.1
3,496,717	+		EFB2_03339	0.70	+1.9
3,496,717	+		EFB2_03339	0.70	+0.6
3,496,717	+		EFB2_03339	0.70	+1.1
3,496,718	-		EFB2_03339	0.70	-1.4
3,496,718	-		EFB2_03339	0.70	+1.1
3,496,718	-		EFB2_03339	0.70	-1.2
3,496,718	-		EFB2_03339	0.70	-1.4
3,496,718	-		EFB2_03339	0.70	+2.0
3,496,718	-		EFB2_03339	0.70	-1.8
3,496,718	-		EFB2_03339	0.70	-1.2
3,496,718	-		EFB2_03339	0.70	+0.1
3,496,718	-		EFB2_03339	0.70	-1.7
3,496,718	-		EFB2_03339	0.70	+2.1
3,496,760	+		EFB2_03339	0.74	-2.2
3,496,760	+		EFB2_03339	0.74	-0.7
3,496,760	+		EFB2_03339	0.74	-1.0
3,496,760	+		EFB2_03339	0.74	-0.9
3,496,761	-		EFB2_03339	0.74	-0.3
3,496,761	-		EFB2_03339	0.74	+1.6
3,496,761	-		EFB2_03339	0.74	-0.7
3,496,761	-		EFB2_03339	0.74	-0.7
3,496,761	-		EFB2_03339	0.74	+1.0
3,496,761	-		EFB2_03339	0.74	+0.8
3,496,761	-		EFB2_03339	0.74	-2.4
3,496,761	-		EFB2_03339	0.74	+0.1
3,496,826	+		EFB2_03339	0.81	+1.1
3,496,826	+		EFB2_03339	0.81	-1.6
3,496,827	-		EFB2_03339	0.81	-0.0
3,496,827	-		EFB2_03339	0.81	-0.4
3,496,827	-		EFB2_03339	0.81	+0.8
3,496,827	-		EFB2_03339	0.81	-3.3
3,496,827	-		EFB2_03339	0.81	-0.5
3,496,827	-		EFB2_03339	0.81	-1.6
3,496,831	+		EFB2_03339	0.81	+2.7
3,496,832	-		EFB2_03339	0.81	-0.7
3,496,867	+		EFB2_03339	0.85	-1.9
3,496,867	+		EFB2_03339	0.85	-2.2
3,496,867	+		EFB2_03339	0.85	+3.0
3,496,867	+		EFB2_03339	0.85	-2.2
3,496,867	+		EFB2_03339	0.85	+1.5
3,496,867	+		EFB2_03339	0.85	-0.4
3,496,867	+		EFB2_03339	0.85	+0.4
3,496,867	+		EFB2_03339	0.85	-0.1
3,496,867	+		EFB2_03339	0.85	-1.4
3,496,867	+		EFB2_03339	0.85	+0.3
3,496,868	-		EFB2_03339	0.85	-1.0
3,496,868	-		EFB2_03339	0.85	-0.7
3,496,868	-		EFB2_03339	0.85	+1.8
3,496,873	+		EFB2_03339	0.85	-0.4
3,496,873	+		EFB2_03339	0.85	-1.2
3,496,873	+		EFB2_03339	0.85	-1.1
3,496,873	+		EFB2_03339	0.85	-0.3
3,496,873	+		EFB2_03339	0.85	-0.7
3,496,874	-		EFB2_03339	0.85	+1.5
3,496,926	+				+1.0
3,496,927	-				+0.6
3,496,927	-				+0.8
3,497,000	+				-0.7
3,497,002	+				-0.4
3,497,002	+				-2.1
3,497,002	+				-1.4
3,497,002	+				+0.1
3,497,003	-				-1.9
3,497,036	+				+1.8
3,497,036	+				+0.1
3,497,036	+				+0.3
3,497,036	+				-0.2
3,497,037	-				+0.5
3,497,037	-				-0.5
3,497,037	-				+1.3
3,497,049	+				-0.1
3,497,050	-				+0.6
3,497,056	+				-0.9
3,497,057	-				-0.5
3,497,057	-				-0.3
3,497,057	-				+0.4
3,497,090	+				+1.7
3,497,090	+				+0.9
3,497,113	-				+1.3
3,497,126	+				+0.6
3,497,126	+				+0.0
3,497,126	+				-1.7
3,497,127	-				+0.1
3,497,127	-				-1.3
3,497,127	-				+0.5
3,497,127	-				+1.2
3,497,157	+				-1.2
3,497,157	+				-0.6
3,497,157	+				-2.5
3,497,157	+				+1.1
3,497,157	+				+1.9
3,497,158	-				-0.1
3,497,158	-				-0.0
3,497,158	-				+0.1
3,497,158	-				+2.1
3,497,158	-				+1.3
3,497,158	-				-1.7
3,497,167	+				-0.3
3,497,167	+				-0.7
3,497,167	+				+0.5
3,497,167	+				-0.5
3,497,168	-				-1.4
3,497,168	-				+0.8
3,497,168	-				-0.3
3,497,168	-				-0.8
3,497,201	+				-0.2
3,497,201	+				+0.5
3,497,202	-				+0.5
3,497,213	+				+0.6
3,497,213	+				-1.0
3,497,214	-				-3.5
3,497,214	-				-0.3
3,497,249	+				+0.1
3,497,249	+				+0.4
3,497,249	+				+0.1
3,497,250	-				-0.4
3,497,250	-				+0.8
3,497,250	-				+0.1
3,497,250	-				+0.6
3,497,250	-				-1.9
3,497,288	+		EFB2_03340	0.14	+0.9
3,497,288	+		EFB2_03340	0.14	-1.2
3,497,289	-		EFB2_03340	0.14	-3.1
3,497,289	-		EFB2_03340	0.14	+0.1
3,497,319	+		EFB2_03340	0.18	+0.7
3,497,320	-		EFB2_03340	0.18	+1.3
3,497,320	-		EFB2_03340	0.18	-1.9
3,497,332	+		EFB2_03340	0.19	+0.4
3,497,353	-		EFB2_03340	0.22	+1.0
3,497,353	-		EFB2_03340	0.22	-0.1
3,497,361	+		EFB2_03340	0.23	+1.3
3,497,361	+		EFB2_03340	0.23	+1.7
3,497,361	+		EFB2_03340	0.23	+1.0
3,497,361	+		EFB2_03340	0.23	+0.1
3,497,361	+		EFB2_03340	0.23	-0.3
3,497,362	-		EFB2_03340	0.23	-3.1
3,497,362	-		EFB2_03340	0.23	-3.1
3,497,380	+		EFB2_03340	0.25	+1.0
3,497,380	+		EFB2_03340	0.25	+0.2
3,497,381	-		EFB2_03340	0.25	-1.5
3,497,381	-		EFB2_03340	0.25	-2.3
3,497,387	-		EFB2_03340	0.26	-1.8
3,497,393	-		EFB2_03340	0.27	-0.9
3,497,408	+		EFB2_03340	0.29	-2.9
3,497,412	-		EFB2_03340	0.29	-0.9
3,497,491	+		EFB2_03340	0.39	-0.5
3,497,491	+		EFB2_03340	0.39	+0.1
3,497,491	+		EFB2_03340	0.39	-0.7
3,497,491	+		EFB2_03340	0.39	-1.8
3,497,491	+		EFB2_03340	0.39	-0.4
3,497,491	+		EFB2_03340	0.39	+0.9
3,497,491	+		EFB2_03340	0.39	-1.3
3,497,491	+		EFB2_03340	0.39	+1.2
3,497,491	+		EFB2_03340	0.39	+1.4
3,497,491	+		EFB2_03340	0.39	+0.4
3,497,491	+		EFB2_03340	0.39	+0.0
3,497,491	+		EFB2_03340	0.39	-1.3
3,497,491	+		EFB2_03340	0.39	+0.1
3,497,491	+		EFB2_03340	0.39	+0.1
3,497,491	+		EFB2_03340	0.39	-3.2
3,497,491	+		EFB2_03340	0.39	-1.6
3,497,491	+		EFB2_03340	0.39	-0.5
3,497,491	+		EFB2_03340	0.39	+1.9
3,497,491	+		EFB2_03340	0.39	-0.3
3,497,491	+		EFB2_03340	0.39	-0.0
3,497,491	+		EFB2_03340	0.39	-1.8
3,497,491	+		EFB2_03340	0.39	+1.1
3,497,491	+		EFB2_03340	0.39	-2.1
3,497,491	+		EFB2_03340	0.39	-2.7
3,497,491	+		EFB2_03340	0.39	+0.7
3,497,491	+		EFB2_03340	0.39	-0.7
3,497,491	+		EFB2_03340	0.39	-0.9
3,497,491	+		EFB2_03340	0.39	-1.9
3,497,491	+		EFB2_03340	0.39	+0.1
3,497,491	+		EFB2_03340	0.39	-1.8
3,497,491	+		EFB2_03340	0.39	+0.4
3,497,491	+		EFB2_03340	0.39	-0.1
3,497,491	+		EFB2_03340	0.39	+0.9
3,497,491	+		EFB2_03340	0.39	+0.9
3,497,492	-		EFB2_03340	0.39	-0.4
3,497,492	-		EFB2_03340	0.39	-0.6
3,497,492	-		EFB2_03340	0.39	-0.6
3,497,492	-		EFB2_03340	0.39	-1.4
3,497,492	-		EFB2_03340	0.39	+0.6
3,497,492	-		EFB2_03340	0.39	+1.5
3,497,492	-		EFB2_03340	0.39	+1.5
3,497,492	-		EFB2_03340	0.39	+1.7
3,497,492	-		EFB2_03340	0.39	+1.0
3,497,492	-		EFB2_03340	0.39	+0.3
3,497,492	-		EFB2_03340	0.39	+0.1
3,497,492	-		EFB2_03340	0.39	+1.7
3,497,492	-		EFB2_03340	0.39	-2.6
3,497,492	-		EFB2_03340	0.39	-3.2
3,497,492	-		EFB2_03340	0.39	+0.8
3,497,492	-		EFB2_03340	0.39	-0.2
3,497,492	-		EFB2_03340	0.39	-1.8
3,497,492	-		EFB2_03340	0.39	-0.7
3,497,492	-		EFB2_03340	0.39	+2.1
3,497,492	-		EFB2_03340	0.39	+0.3
3,497,492	-		EFB2_03340	0.39	-0.1
3,497,492	-		EFB2_03340	0.39	+1.1
3,497,492	-		EFB2_03340	0.39	+2.1
3,497,492	-		EFB2_03340	0.39	+2.1
3,497,492	-		EFB2_03340	0.39	+0.0
3,497,492	-		EFB2_03340	0.39	-1.9
3,497,492	-		EFB2_03340	0.39	+1.3
3,497,492	-		EFB2_03340	0.39	+0.7
3,497,492	-		EFB2_03340	0.39	+1.4
3,497,492	-		EFB2_03340	0.39	-0.3
3,497,492	-		EFB2_03340	0.39	-2.3
3,497,492	-		EFB2_03340	0.39	-3.2
3,497,492	-		EFB2_03340	0.39	+0.2
3,497,492	-		EFB2_03340	0.39	-0.7
3,497,492	-		EFB2_03340	0.39	-0.8
3,497,492	-		EFB2_03340	0.39	+0.9
3,497,492	-		EFB2_03340	0.39	+2.1
3,497,492	-		EFB2_03340	0.39	-2.0
3,497,492	-		EFB2_03340	0.39	+0.7
3,497,492	-		EFB2_03340	0.39	+1.1
3,497,492	-		EFB2_03340	0.39	-1.2
3,497,492	-		EFB2_03340	0.39	+0.2
3,497,492	-		EFB2_03340	0.39	-0.2
3,497,492	-		EFB2_03340	0.39	-0.7
3,497,492	-		EFB2_03340	0.39	-0.4
3,497,492	-		EFB2_03340	0.39	-1.9
3,497,492	-		EFB2_03340	0.39	+0.1
3,497,492	-		EFB2_03340	0.39	+1.6
3,497,494	-		EFB2_03340	0.39	+0.9
3,497,512	+		EFB2_03340	0.41	-0.4
3,497,512	+		EFB2_03340	0.41	-1.4
3,497,512	+		EFB2_03340	0.41	+1.3
3,497,512	+		EFB2_03340	0.41	-2.0
3,497,513	-		EFB2_03340	0.42	-0.6
3,497,547	+		EFB2_03340	0.46	-2.6
3,497,547	+		EFB2_03340	0.46	+2.1
3,497,548	-		EFB2_03340	0.46	+0.3
3,497,548	-		EFB2_03340	0.46	+0.4
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