Strain Fitness in Escherichia fergusonii Becca around EFB2_03139

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,281,196	+				+1.3
3,281,197	-				-1.5
3,281,197	-				+0.2
3,281,197	-				+0.8
3,281,197	-				-1.6
3,281,199	+				-1.1
3,281,200	-				-2.1
3,281,200	-				+1.1
3,281,200	-				+0.3
3,281,200	-				+1.0
3,281,204	+				-0.6
3,281,204	+				-0.3
3,281,204	+				+0.7
3,281,204	+				+0.1
3,281,205	-				-0.6
3,281,205	-				-1.6
3,281,205	-				-0.7
3,281,205	-				-0.5
3,281,205	-				+1.0
3,281,205	-				-1.5
3,281,205	-				+1.5
3,281,205	-				+0.5
3,281,205	-				-0.7
3,281,211	+				-0.7
3,281,211	+				+1.1
3,281,211	+				-1.0
3,281,212	-				-1.6
3,281,236	+				+3.5
3,281,237	-				+0.5
3,281,237	-				-0.2
3,281,237	-				+0.5
3,281,240	-				-1.7
3,281,240	-				-0.5
3,281,268	-				-3.0
3,281,268	-				-0.5
3,281,268	-				-1.0
3,281,279	+				+2.1
3,281,280	-				+0.0
3,281,280	-				+0.0
3,281,280	-				-1.3
3,281,280	-				+1.4
3,281,280	-				-2.4
3,281,282	+				-2.3
3,281,282	+				-1.0
3,281,282	+				-0.9
3,281,283	-				-0.2
3,281,283	-				+0.9
3,281,283	-				-2.8
3,281,283	-				+0.0
3,281,283	-				+0.5
3,281,283	-				-0.6
3,281,283	-				-0.2
3,281,283	-				-2.4
3,281,283	-				+1.2
3,281,283	-				+0.7
3,281,294	-		EFB2_03138	0.10	+1.6
3,281,298	+		EFB2_03138	0.11	-1.5
3,281,299	-		EFB2_03138	0.11	+0.2
3,281,299	-		EFB2_03138	0.11	+1.3
3,281,299	-		EFB2_03138	0.11	+0.1
3,281,299	-		EFB2_03138	0.11	+1.2
3,281,299	-		EFB2_03138	0.11	-1.6
3,281,299	-		EFB2_03138	0.11	+0.8
3,281,299	-		EFB2_03138	0.11	+1.4
3,281,299	-		EFB2_03138	0.11	-1.2
3,281,299	-		EFB2_03138	0.11	-2.4
3,281,299	-		EFB2_03138	0.11	-0.1
3,281,315	+		EFB2_03138	0.14	+2.3
3,281,315	+		EFB2_03138	0.14	-0.9
3,281,315	+		EFB2_03138	0.14	+2.7
3,281,315	+		EFB2_03138	0.14	-1.2
3,281,316	-		EFB2_03138	0.14	+0.8
3,281,316	-		EFB2_03138	0.14	-2.5
3,281,316	-		EFB2_03138	0.14	+2.1
3,281,316	-		EFB2_03138	0.14	-1.0
3,281,316	-		EFB2_03138	0.14	+1.8
3,281,316	-		EFB2_03138	0.14	-2.3
3,281,316	-		EFB2_03138	0.14	+0.0
3,281,316	-		EFB2_03138	0.14	+0.9
3,281,316	-		EFB2_03138	0.14	+0.0
3,281,316	-		EFB2_03138	0.14	-1.3
3,281,316	-		EFB2_03138	0.14	+0.1
3,281,316	-		EFB2_03138	0.14	+0.6
3,281,320	-		EFB2_03138	0.15	-0.4
3,281,320	-		EFB2_03138	0.15	-0.1
3,281,337	-		EFB2_03138	0.18	+0.4
3,281,337	-		EFB2_03138	0.18	-1.5
3,281,384	+		EFB2_03138	0.27	+0.8
3,281,385	-		EFB2_03138	0.27	+2.4
3,281,392	+		EFB2_03138	0.28	+2.1
3,281,393	-		EFB2_03138	0.28	-0.7
3,281,393	-		EFB2_03138	0.28	+0.5
3,281,393	-		EFB2_03138	0.28	-0.3
3,281,393	-		EFB2_03138	0.28	+0.5
3,281,427	+		EFB2_03138	0.34	-1.0
3,281,428	-		EFB2_03138	0.35	+0.9
3,281,428	-		EFB2_03138	0.35	-0.9
3,281,428	-		EFB2_03138	0.35	+0.8
3,281,428	-		EFB2_03138	0.35	+1.0
3,281,441	+		EFB2_03138	0.37	-1.2
3,281,491	-		EFB2_03138	0.46	-0.4
3,281,491	-		EFB2_03138	0.46	-1.3
3,281,509	+		EFB2_03138	0.49	+2.7
3,281,509	+		EFB2_03138	0.49	-0.1
3,281,510	-		EFB2_03138	0.50	-2.5
3,281,560	+		EFB2_03138	0.59	+1.0
3,281,579	+		EFB2_03138	0.62	+2.2
3,281,603	+		EFB2_03138	0.66	+1.8
3,281,604	-		EFB2_03138	0.67	-2.0
3,281,604	-		EFB2_03138	0.67	-0.6
3,281,604	-		EFB2_03138	0.67	+1.0
3,281,604	-		EFB2_03138	0.67	-1.2
3,281,604	-		EFB2_03138	0.67	-1.5
3,281,604	-		EFB2_03138	0.67	-1.2
3,281,605	+		EFB2_03138	0.67	-1.8
3,281,605	+		EFB2_03138	0.67	-1.0
3,281,605	+		EFB2_03138	0.67	+0.8
3,281,605	+		EFB2_03138	0.67	-1.2
3,281,606	-		EFB2_03138	0.67	+0.7
3,281,606	-		EFB2_03138	0.67	+0.2
3,281,606	-		EFB2_03138	0.67	+0.3
3,281,606	-		EFB2_03138	0.67	+1.9
3,281,606	-		EFB2_03138	0.67	-2.1
3,281,606	-		EFB2_03138	0.67	-1.6
3,281,606	-		EFB2_03138	0.67	+2.9
3,281,649	-		EFB2_03138	0.75	+0.1
3,281,657	+		EFB2_03138	0.76	+0.7
3,281,658	-		EFB2_03138	0.77	-2.0
3,281,658	-		EFB2_03138	0.77	-1.7
3,281,768	+				+1.4
3,281,789	+				+0.1
3,281,789	+				+1.5
3,281,790	-				+0.1
3,281,790	-				+0.2
3,281,800	-				-0.3
3,281,800	-				+0.1
3,281,819	+				-1.3
3,281,819	+				-1.0
3,281,819	+				+0.5
3,281,819	+				+1.7
3,281,820	-				+0.7
3,281,820	-				+0.8
3,281,820	-				+0.3
3,281,820	-				-2.7
3,281,820	-				+0.4
3,281,820	-				+0.2
3,281,820	-				-0.3
3,281,820	-				-1.5
3,281,820	-				+1.2
3,281,821	+				+3.0
3,281,821	+				-2.0
3,281,821	+				-0.4
3,281,821	+				+1.5
3,281,821	+				-0.8
3,281,822	-				-0.4
3,281,822	-				-2.2
3,281,822	-				-2.5
3,281,822	-				-1.7
3,281,822	-				+0.5
3,281,822	-				-0.5
3,281,822	-				+0.5
3,281,822	-				+0.9
3,281,822	-				-0.6
3,281,822	-				+1.2
3,281,822	-				+0.6
3,281,850	+				+0.7
3,281,929	+				+1.0
3,281,930	-				+2.1
3,281,930	-				+0.9
3,281,930	-				+0.8
3,281,930	-				+1.4
3,281,930	-				+1.1
3,281,933	+				+0.7
3,281,934	-				-2.5
3,281,936	+				+0.4
3,281,937	-				-1.8
3,281,969	-				-1.1
3,281,969	-				+0.5
3,281,976	+				-1.6
3,281,976	+				+0.6
3,281,976	+				-0.1
3,281,976	+				-0.7
3,281,976	+				+1.2
3,281,976	+				-2.0
3,281,977	-				+0.7
3,281,977	-				-0.5
3,281,977	-				-1.4
3,281,977	-				-0.2
3,281,977	-				+0.9
3,282,028	+				-0.9
3,282,028	+				+0.9
3,282,029	-				+0.7
3,282,029	-				+2.6
3,282,029	-				+0.3
3,282,029	-				-3.0
3,282,029	-				-1.8
3,282,029	-				-0.1
3,282,029	-				+1.9
3,282,029	-				-2.0
3,282,034	+				-2.0
3,282,034	+				-2.3
3,282,034	+				+2.9
3,282,034	+				-1.2
3,282,034	+				+0.8
3,282,034	+				+0.5
3,282,035	-				+1.4
3,282,035	-				+0.0
3,282,035	-				-1.2
3,282,038	+				-0.2
3,282,038	+				-0.4
3,282,038	+				-3.5
3,282,038	+				+0.2
3,282,038	+				-0.4
3,282,038	+				-0.1
3,282,039	-				-0.2
3,282,039	-				+1.8
3,282,039	-				-0.2
3,282,044	+				-2.9
3,282,044	+				-0.6
3,282,044	+				+1.0
3,282,045	-				+1.2
3,282,045	-				-0.2
3,282,045	-				-0.6
3,282,045	-				+0.7
3,282,056	+				-0.5
3,282,088	+				-0.2
3,282,088	+				+0.2
3,282,088	+				-2.0
3,282,088	+				+0.2
3,282,088	+				-1.8
3,282,088	+				+1.0
3,282,088	+				+1.8
3,282,088	+				-0.7
3,282,088	+				-0.7
3,282,089	-				+0.6
3,282,089	-				-1.5
3,282,089	-				-1.8
3,282,089	-				-1.1
3,282,089	-				-2.1
3,282,089	-				-0.0
3,282,089	-				-3.2
3,282,091	+				-2.8
3,282,091	+				-1.6
3,282,091	+				-0.6
3,282,092	-				+1.0
3,282,119	+				-0.3
3,282,127	+				-2.8
3,282,127	+				+0.6
3,282,127	+				+0.8
3,282,128	-				-0.9
3,282,128	-				-0.4
3,282,128	-				-2.4
3,282,161	+		EFB2_03139	0.10	+2.1
3,282,161	+		EFB2_03139	0.10	-1.1
3,282,161	+		EFB2_03139	0.10	-1.7
3,282,161	+		EFB2_03139	0.10	+0.1
3,282,161	+		EFB2_03139	0.10	+0.7
3,282,161	+		EFB2_03139	0.10	-3.2
3,282,161	+		EFB2_03139	0.10	-0.7
3,282,161	+		EFB2_03139	0.10	+2.1
3,282,161	+		EFB2_03139	0.10	-1.0
3,282,161	+		EFB2_03139	0.10	+0.6
3,282,161	+		EFB2_03139	0.10	-0.0
3,282,161	+		EFB2_03139	0.10	-0.3
3,282,161	+		EFB2_03139	0.10	-3.0
3,282,162	-		EFB2_03139	0.11	+0.5
3,282,162	-		EFB2_03139	0.11	+1.0
3,282,162	-		EFB2_03139	0.11	-1.9
3,282,162	-		EFB2_03139	0.11	+1.0
3,282,162	-		EFB2_03139	0.11	-1.3
3,282,162	-		EFB2_03139	0.11	-1.8
3,282,197	+		EFB2_03139	0.12	-0.9
3,282,197	+		EFB2_03139	0.12	+1.3
3,282,197	+		EFB2_03139	0.12	+0.2
3,282,197	+		EFB2_03139	0.12	+0.9
3,282,197	+		EFB2_03139	0.12	+1.6
3,282,197	+		EFB2_03139	0.12	+0.4
3,282,198	-		EFB2_03139	0.12	+1.6
3,282,198	-		EFB2_03139	0.12	+0.9
3,282,218	+		EFB2_03139	0.14	-1.8
3,282,219	-		EFB2_03139	0.14	-1.5
3,282,219	-		EFB2_03139	0.14	+1.1
3,282,228	+		EFB2_03139	0.14	+0.1
3,282,228	+		EFB2_03139	0.14	-3.2
3,282,228	+		EFB2_03139	0.14	-1.1
3,282,229	-		EFB2_03139	0.14	+0.5
3,282,229	-		EFB2_03139	0.14	-0.1
3,282,229	-		EFB2_03139	0.14	+1.2
3,282,229	-		EFB2_03139	0.14	-0.6
3,282,254	+		EFB2_03139	0.16	+0.0
3,282,255	-		EFB2_03139	0.16	+1.4
3,282,255	-		EFB2_03139	0.16	+1.3
3,282,255	-		EFB2_03139	0.16	-1.9
3,282,295	+		EFB2_03139	0.18	-0.7
3,282,295	+		EFB2_03139	0.18	-0.3
3,282,295	+		EFB2_03139	0.18	-2.6
3,282,295	+		EFB2_03139	0.18	+0.5
3,282,295	+		EFB2_03139	0.18	-1.5
3,282,295	+		EFB2_03139	0.18	+1.8
3,282,295	+		EFB2_03139	0.18	-0.7
3,282,295	+		EFB2_03139	0.18	+1.3
3,282,296	-		EFB2_03139	0.18	-1.9
3,282,296	-		EFB2_03139	0.18	+1.1
3,282,296	-		EFB2_03139	0.18	+0.1
3,282,296	-		EFB2_03139	0.18	+0.5
3,282,296	-		EFB2_03139	0.18	-2.1
3,282,317	+		EFB2_03139	0.19	-0.1
3,282,317	+		EFB2_03139	0.19	-1.6
3,282,318	-		EFB2_03139	0.19	-0.8
3,282,318	-		EFB2_03139	0.19	+1.0
3,282,326	+		EFB2_03139	0.19	+2.4
3,282,326	+		EFB2_03139	0.19	-1.5
3,282,326	+		EFB2_03139	0.19	+0.1
3,282,329	-		EFB2_03139	0.20	+0.5
3,282,329	-		EFB2_03139	0.20	-1.5
3,282,329	-		EFB2_03139	0.20	+0.3
3,282,379	-		EFB2_03139	0.22	-0.2
3,282,398	+		EFB2_03139	0.23	+1.0
3,282,398	+		EFB2_03139	0.23	-1.3
3,282,398	+		EFB2_03139	0.23	-1.3
3,282,398	+		EFB2_03139	0.23	-0.3
3,282,398	+		EFB2_03139	0.23	+0.5
3,282,398	+		EFB2_03139	0.23	+0.8
3,282,399	-		EFB2_03139	0.23	-3.4
3,282,399	-		EFB2_03139	0.23	-0.6
3,282,399	-		EFB2_03139	0.23	-1.6
3,282,399	-		EFB2_03139	0.23	+0.5
3,282,458	+		EFB2_03139	0.27	+2.7
3,282,458	+		EFB2_03139	0.27	+0.9
3,282,458	+		EFB2_03139	0.27	+0.7
3,282,458	+		EFB2_03139	0.27	-0.5
3,282,458	+		EFB2_03139	0.27	-0.1
3,282,458	+		EFB2_03139	0.27	-0.7
3,282,459	-		EFB2_03139	0.27	-2.8
3,282,459	-		EFB2_03139	0.27	+0.1
3,282,459	-		EFB2_03139	0.27	+1.5
3,282,459	-		EFB2_03139	0.27	-1.2
3,282,459	-		EFB2_03139	0.27	+0.0
3,282,459	-		EFB2_03139	0.27	+0.5
3,282,459	-		EFB2_03139	0.27	-3.8
3,282,460	+		EFB2_03139	0.27	+0.5
3,282,461	-		EFB2_03139	0.27	+0.5
3,282,461	-		EFB2_03139	0.27	-2.1
3,282,509	+		EFB2_03139	0.29	+0.4
3,282,509	+		EFB2_03139	0.29	+1.0
3,282,509	+		EFB2_03139	0.29	-2.5
3,282,509	+		EFB2_03139	0.29	-0.4
3,282,509	+		EFB2_03139	0.29	+2.5
3,282,510	-		EFB2_03139	0.29	+0.2
3,282,510	-		EFB2_03139	0.29	+0.2
3,282,510	-		EFB2_03139	0.29	-2.6
3,282,510	-		EFB2_03139	0.29	-1.1
3,282,510	-		EFB2_03139	0.29	-1.5
3,282,510	-		EFB2_03139	0.29	-2.0
3,282,510	-		EFB2_03139	0.29	-1.9
3,282,534	+		EFB2_03139	0.31	-1.6
3,282,534	+		EFB2_03139	0.31	-1.2
3,282,534	+		EFB2_03139	0.31	-1.1
3,282,534	+		EFB2_03139	0.31	-2.6
3,282,534	+		EFB2_03139	0.31	+0.8
3,282,535	-		EFB2_03139	0.31	+0.8
3,282,535	-		EFB2_03139	0.31	+0.1
3,282,535	-		EFB2_03139	0.31	+1.3
3,282,535	-		EFB2_03139	0.31	-0.8
3,282,535	-		EFB2_03139	0.31	+0.2
3,282,552	+		EFB2_03139	0.32	+1.7
3,282,552	+		EFB2_03139	0.32	-2.6
3,282,552	+		EFB2_03139	0.32	+1.8
3,282,552	+		EFB2_03139	0.32	+0.7
3,282,558	+		EFB2_03139	0.32	-0.2
3,282,558	+		EFB2_03139	0.32	-2.1
3,282,558	+		EFB2_03139	0.32	+0.6
3,282,558	+		EFB2_03139	0.32	-0.9
3,282,558	+		EFB2_03139	0.32	-0.2
3,282,558	+		EFB2_03139	0.32	+0.1
3,282,559	-		EFB2_03139	0.32	+0.8
3,282,559	-		EFB2_03139	0.32	-1.9
3,282,559	-		EFB2_03139	0.32	-0.4
3,282,559	-		EFB2_03139	0.32	-1.2
3,282,559	-		EFB2_03139	0.32	+0.1
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