Strain Fitness in Escherichia fergusonii Becca around EFB2_03120

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,256,172	-				-1.2
3,256,172	-				+0.5
3,256,172	-				+0.1
3,256,193	+				-1.2
3,256,193	+				+1.7
3,256,193	+				+1.1
3,256,193	+				-0.4
3,256,193	+				+0.7
3,256,194	-				+1.9
3,256,194	-				-1.8
3,256,194	-				-0.4
3,256,194	-				-1.2
3,256,194	-				+1.9
3,256,194	-				-0.4
3,256,194	-				-1.4
3,256,194	-				-2.5
3,256,194	-				+1.4
3,256,196	+				-1.3
3,256,196	+				+0.1
3,256,196	+				+1.8
3,256,196	+				-2.1
3,256,197	-				+0.9
3,256,197	-				+2.1
3,256,367	+				-0.2
3,256,368	-				-2.8
3,256,402	+				-0.8
3,256,403	-				+1.4
3,256,403	-				+0.6
3,256,406	+				-2.5
3,256,407	-				+1.6
3,256,407	-				+0.8
3,256,407	-				+0.3
3,256,476	+				-1.7
3,256,477	-				+0.5
3,256,487	+				-0.3
3,256,488	-				+0.4
3,256,488	-				-1.1
3,256,544	+				-0.7
3,256,545	-				-2.5
3,256,573	+				+1.0
3,256,588	+				-2.6
3,256,589	-				+1.0
3,256,592	+				-0.9
3,256,609	-				+1.4
3,256,609	-				-0.6
3,256,613	+				+1.5
3,256,613	+				-2.5
3,256,614	-				-1.9
3,256,614	-				+1.1
3,256,614	-				+2.1
3,256,622	+				-0.5
3,256,623	-				+0.6
3,256,636	+				+0.9
3,256,636	+				+1.1
3,256,636	+				-0.7
3,256,636	+				+0.5
3,256,637	-				+0.1
3,256,637	-				-0.2
3,256,637	-				-3.0
3,256,676	-		EFB2_03119	0.12	-2.9
3,256,690	-		EFB2_03119	0.15	-1.2
3,256,875	-		EFB2_03119	0.48	-3.5
3,256,875	-		EFB2_03119	0.48	-3.2
3,256,875	-		EFB2_03119	0.48	-0.2
3,256,875	-		EFB2_03119	0.48	-2.6
3,256,959	+		EFB2_03119	0.62	+0.5
3,256,959	+		EFB2_03119	0.62	-1.3
3,256,959	+		EFB2_03119	0.62	+1.0
3,256,959	+		EFB2_03119	0.62	-1.0
3,256,959	+		EFB2_03119	0.62	+2.1
3,256,960	-		EFB2_03119	0.63	-1.1
3,256,960	-		EFB2_03119	0.63	+0.6
3,256,960	-		EFB2_03119	0.63	-0.4
3,256,960	-		EFB2_03119	0.63	-2.3
3,256,960	-		EFB2_03119	0.63	-1.8
3,256,960	-		EFB2_03119	0.63	-2.3
3,256,960	-		EFB2_03119	0.63	-0.4
3,256,960	-		EFB2_03119	0.63	-1.2
3,256,960	-		EFB2_03119	0.63	-0.1
3,256,960	-		EFB2_03119	0.63	+0.1
3,256,960	-		EFB2_03119	0.63	-0.4
3,256,960	-		EFB2_03119	0.63	-4.0
3,257,033	+		EFB2_03119	0.76	+1.2
3,257,034	-		EFB2_03119	0.76	+0.7
3,257,044	+		EFB2_03119	0.77	+0.5
3,257,069	-		EFB2_03119	0.82	-1.7
3,257,087	+		EFB2_03119	0.85	-1.2
3,257,087	+		EFB2_03119	0.85	+0.1
3,257,088	-		EFB2_03119	0.85	+0.4
3,257,088	-		EFB2_03119	0.85	-3.6
3,257,088	-		EFB2_03119	0.85	-2.2
3,257,088	-		EFB2_03119	0.85	-0.1
3,257,088	-		EFB2_03119	0.85	+1.0
3,257,088	-		EFB2_03119	0.85	-0.5
3,257,095	-		EFB2_03119	0.87	-0.3
3,257,098	-		EFB2_03119	0.87	-1.8
3,257,098	-		EFB2_03119	0.87	-0.7
3,257,098	-		EFB2_03119	0.87	-1.2
3,257,219	-				-0.5
3,257,315	+				-2.0
3,257,315	+				-0.9
3,257,315	+				+0.4
3,257,316	-				+0.4
3,257,316	-				+1.1
3,257,316	-				-1.2
3,257,316	-				+2.1
3,257,316	-				+0.9
3,257,316	-				+1.0
3,257,316	-				+0.0
3,257,380	-		EFB2_03120	0.13	+0.7
3,257,380	-		EFB2_03120	0.13	+1.0
3,257,482	-		EFB2_03120	0.19	-2.8
3,257,482	-		EFB2_03120	0.19	-2.3
3,257,482	-		EFB2_03120	0.19	+0.7
3,257,530	-		EFB2_03120	0.22	+1.6
3,257,605	-		EFB2_03120	0.27	-1.9
3,257,605	-		EFB2_03120	0.27	-2.1
3,257,634	+		EFB2_03120	0.28	-0.8
3,257,634	+		EFB2_03120	0.28	-3.3
3,257,635	-		EFB2_03120	0.29	+1.1
3,257,635	-		EFB2_03120	0.29	-0.3
3,257,635	-		EFB2_03120	0.29	+2.1
3,257,643	-		EFB2_03120	0.29	-3.2
3,257,660	+		EFB2_03120	0.30	-1.3
3,257,660	+		EFB2_03120	0.30	+0.2
3,257,660	+		EFB2_03120	0.30	+0.1
3,257,660	+		EFB2_03120	0.30	+2.1
3,257,660	+		EFB2_03120	0.30	-1.7
3,257,660	+		EFB2_03120	0.30	+1.5
3,257,661	-		EFB2_03120	0.30	-1.7
3,257,661	-		EFB2_03120	0.30	-2.9
3,257,661	-		EFB2_03120	0.30	+0.2
3,257,661	-		EFB2_03120	0.30	-0.6
3,257,661	-		EFB2_03120	0.30	+0.2
3,257,661	-		EFB2_03120	0.30	-1.7
3,257,661	-		EFB2_03120	0.30	+2.1
3,257,661	-		EFB2_03120	0.30	-2.0
3,257,661	-		EFB2_03120	0.30	-0.9
3,257,661	-		EFB2_03120	0.30	-1.6
3,257,661	-		EFB2_03120	0.30	+0.2
3,257,661	-		EFB2_03120	0.30	+0.5
3,257,661	-		EFB2_03120	0.30	+1.4
3,257,661	-		EFB2_03120	0.30	-0.6
3,257,661	-		EFB2_03120	0.30	+2.9
3,257,661	-		EFB2_03120	0.30	-0.8
3,257,661	-		EFB2_03120	0.30	+1.5
3,257,661	-		EFB2_03120	0.30	-0.7
3,257,788	-		EFB2_03120	0.38	-1.6
3,257,806	-		EFB2_03120	0.39	+0.5
3,257,810	+		EFB2_03120	0.39	+1.7
3,257,820	+		EFB2_03120	0.40	-0.5
3,257,820	+		EFB2_03120	0.40	-1.9
3,257,821	-		EFB2_03120	0.40	-2.1
3,257,821	-		EFB2_03120	0.40	+0.9
3,257,821	-		EFB2_03120	0.40	+0.8
3,257,836	-		EFB2_03120	0.41	+0.6
3,257,836	-		EFB2_03120	0.41	+0.2
3,257,836	-		EFB2_03120	0.41	+1.0
3,257,864	-		EFB2_03120	0.42	+1.1
3,257,945	+		EFB2_03120	0.47	-1.3
3,257,946	-		EFB2_03120	0.47	+1.8
3,257,946	-		EFB2_03120	0.47	+0.5
3,257,964	-		EFB2_03120	0.49	+1.9
3,258,035	-		EFB2_03120	0.53	+0.1
3,258,076	-		EFB2_03120	0.55	-3.0
3,258,144	+		EFB2_03120	0.60	+2.1
3,258,144	+		EFB2_03120	0.60	+0.3
3,258,144	+		EFB2_03120	0.60	-1.3
3,258,145	-		EFB2_03120	0.60	-0.1
3,258,145	-		EFB2_03120	0.60	+0.2
3,258,185	+		EFB2_03120	0.62	+1.4
3,258,185	+		EFB2_03120	0.62	-2.3
3,258,185	+		EFB2_03120	0.62	-0.6
3,258,185	+		EFB2_03120	0.62	-2.1
3,258,185	+		EFB2_03120	0.62	+0.7
3,258,186	-		EFB2_03120	0.62	-0.7
3,258,186	-		EFB2_03120	0.62	+1.4
3,258,186	-		EFB2_03120	0.62	-0.1
3,258,216	+		EFB2_03120	0.64	-0.5
3,258,216	+		EFB2_03120	0.64	-0.0
3,258,260	-		EFB2_03120	0.67	-0.4
3,258,318	+		EFB2_03120	0.70	-2.1
3,258,337	-		EFB2_03120	0.71	-2.2
3,258,337	-		EFB2_03120	0.71	+1.3
3,258,383	+		EFB2_03120	0.74	+2.9
3,258,383	+		EFB2_03120	0.74	+0.2
3,258,383	+		EFB2_03120	0.74	-3.2
3,258,384	-		EFB2_03120	0.74	-0.5
3,258,384	-		EFB2_03120	0.74	-1.0
3,258,384	-		EFB2_03120	0.74	+0.3
3,258,384	-		EFB2_03120	0.74	+0.4
3,258,387	+		EFB2_03120	0.74	-1.6
3,258,387	+		EFB2_03120	0.74	-1.1
3,258,388	-		EFB2_03120	0.74	-0.1
3,258,426	+		EFB2_03120	0.77	-1.3
3,258,428	+		EFB2_03120	0.77	-2.8
3,258,428	+		EFB2_03120	0.77	-1.1
3,258,428	+		EFB2_03120	0.77	-1.8
3,258,428	+		EFB2_03120	0.77	-1.3
3,258,429	-		EFB2_03120	0.77	-0.9
3,258,505	-		EFB2_03120	0.82	-2.1
3,258,613	-		EFB2_03120	0.88	-2.6
3,258,621	+		EFB2_03120	0.89	-1.1
3,258,622	-		EFB2_03120	0.89	+0.2
3,258,695	+				-1.3
3,258,695	+				-1.9
3,258,696	-				-1.7
3,258,696	-				-0.8
3,258,696	-				-1.6
3,258,696	-				+2.4
3,258,696	-				+2.1
3,258,696	-				-0.7
3,258,745	+				+2.1
3,258,746	-				+2.4
3,258,796	-				-0.2
3,258,798	+				+1.1
3,258,798	+				+2.1
3,258,798	+				-0.2
3,258,798	+				-2.0
3,258,798	+				-1.0
3,258,798	+				+2.1
3,258,799	-				-2.1
3,258,799	-				-3.4
3,258,799	-				+0.4
3,258,875	-				+0.2
3,258,893	+				+1.8
3,258,894	-				-1.2
3,258,903	-				+1.9
3,258,915	-				-0.9
3,258,915	-				-0.5
3,258,915	-				-2.9
3,258,915	-				+0.1
3,258,915	-				-2.0
3,258,938	-		EFB2_03121	0.10	+0.2
3,258,938	-		EFB2_03121	0.10	+1.5
3,258,938	-		EFB2_03121	0.10	-0.0
3,258,938	-		EFB2_03121	0.10	+0.4
3,258,938	-		EFB2_03121	0.10	-0.3
3,258,938	-		EFB2_03121	0.10	-1.0
3,258,938	-		EFB2_03121	0.10	+1.3
3,258,938	-		EFB2_03121	0.10	+0.7
3,258,944	+		EFB2_03121	0.11	-2.3
3,258,945	-		EFB2_03121	0.11	+1.4
3,258,945	-		EFB2_03121	0.11	-0.4
3,258,945	-		EFB2_03121	0.11	+1.3
3,258,955	+		EFB2_03121	0.11	-1.0
3,259,013	+		EFB2_03121	0.16	+0.3
3,259,032	+		EFB2_03121	0.18	-1.5
3,259,032	+		EFB2_03121	0.18	+0.1
3,259,032	+		EFB2_03121	0.18	+2.1
3,259,033	-		EFB2_03121	0.18	+0.3
3,259,126	+		EFB2_03121	0.25	+0.5
3,259,126	+		EFB2_03121	0.25	+0.5
3,259,126	+		EFB2_03121	0.25	-2.0
3,259,126	+		EFB2_03121	0.25	+0.5
3,259,127	-		EFB2_03121	0.25	+0.9
3,259,127	-		EFB2_03121	0.25	-2.7
3,259,127	-		EFB2_03121	0.25	+0.5
3,259,127	-		EFB2_03121	0.25	-1.0
3,259,127	-		EFB2_03121	0.25	+0.2
3,259,127	-		EFB2_03121	0.25	-0.3
3,259,127	-		EFB2_03121	0.25	+0.9
3,259,127	-		EFB2_03121	0.25	+1.5
3,259,127	-		EFB2_03121	0.25	-0.5
3,259,127	-		EFB2_03121	0.25	-0.1
3,259,129	+		EFB2_03121	0.25	-1.0
3,259,129	+		EFB2_03121	0.25	+0.1
3,259,129	+		EFB2_03121	0.25	+2.1
3,259,129	+		EFB2_03121	0.25	-1.3
3,259,129	+		EFB2_03121	0.25	+0.1
3,259,129	+		EFB2_03121	0.25	-0.4
3,259,130	-		EFB2_03121	0.25	+0.2
3,259,130	-		EFB2_03121	0.25	+0.4
3,259,130	-		EFB2_03121	0.25	+1.9
3,259,130	-		EFB2_03121	0.25	+1.3
3,259,130	-		EFB2_03121	0.25	-1.5
3,259,130	-		EFB2_03121	0.25	+1.3
3,259,130	-		EFB2_03121	0.25	-0.6
3,259,130	-		EFB2_03121	0.25	-0.1
3,259,130	-		EFB2_03121	0.25	-1.7
3,259,130	-		EFB2_03121	0.25	-0.6
3,259,161	+		EFB2_03121	0.28	-0.5
3,259,161	+		EFB2_03121	0.28	+2.4
3,259,162	-		EFB2_03121	0.28	-0.4
3,259,178	+		EFB2_03121	0.29	-0.5
3,259,226	+		EFB2_03121	0.33	-0.9
3,259,226	+		EFB2_03121	0.33	-1.3
3,259,226	+		EFB2_03121	0.33	-0.5
3,259,227	-		EFB2_03121	0.33	+0.5
3,259,227	-		EFB2_03121	0.33	-1.7
3,259,227	-		EFB2_03121	0.33	+2.0
3,259,227	-		EFB2_03121	0.33	-2.4
3,259,227	-		EFB2_03121	0.33	+0.8
3,259,227	-		EFB2_03121	0.33	-1.2
3,259,227	-		EFB2_03121	0.33	+0.7
3,259,252	+		EFB2_03121	0.35	-0.3
3,259,253	-		EFB2_03121	0.35	-1.9
3,259,253	-		EFB2_03121	0.35	+0.3
3,259,253	-		EFB2_03121	0.35	-0.5
3,259,266	+		EFB2_03121	0.36	+1.4
3,259,267	-		EFB2_03121	0.36	-0.4
3,259,267	-		EFB2_03121	0.36	+0.2
3,259,267	-		EFB2_03121	0.36	+0.3
3,259,267	-		EFB2_03121	0.36	-1.5
3,259,267	-		EFB2_03121	0.36	-0.1
3,259,283	+		EFB2_03121	0.38	-1.3
3,259,283	+		EFB2_03121	0.38	-0.3
3,259,283	+		EFB2_03121	0.38	-2.3
3,259,283	+		EFB2_03121	0.38	-1.2
3,259,283	+		EFB2_03121	0.38	+1.5
3,259,284	-		EFB2_03121	0.38	+0.6
3,259,284	-		EFB2_03121	0.38	+1.6
3,259,284	-		EFB2_03121	0.38	-1.7
3,259,284	-		EFB2_03121	0.38	-0.1
3,259,329	+		EFB2_03121	0.41	-2.0
3,259,330	-		EFB2_03121	0.41	+1.1
3,259,330	-		EFB2_03121	0.41	+1.1
3,259,330	-		EFB2_03121	0.41	-0.8
3,259,330	-		EFB2_03121	0.41	-0.2
3,259,339	+		EFB2_03121	0.42	-0.3
3,259,339	+		EFB2_03121	0.42	-1.0
3,259,340	-		EFB2_03121	0.42	+1.0
3,259,340	-		EFB2_03121	0.42	+1.1
3,259,340	-		EFB2_03121	0.42	-0.2
3,259,342	+		EFB2_03121	0.42	-1.2
3,259,342	+		EFB2_03121	0.42	-1.6
3,259,342	+		EFB2_03121	0.42	-0.5
3,259,343	-		EFB2_03121	0.42	+0.8
3,259,343	-		EFB2_03121	0.42	-1.2
3,259,343	-		EFB2_03121	0.42	+0.6
3,259,343	-		EFB2_03121	0.42	+1.5
3,259,343	-		EFB2_03121	0.42	-0.1
3,259,343	-		EFB2_03121	0.42	+1.7
3,259,384	+		EFB2_03121	0.46	+1.4
3,259,384	+		EFB2_03121	0.46	-0.9
3,259,385	-		EFB2_03121	0.46	+0.0
3,259,416	-		EFB2_03121	0.48	-0.7
3,259,416	-		EFB2_03121	0.48	+0.3
3,259,437	-		EFB2_03121	0.50	-0.7
3,259,530	-		EFB2_03121	0.57	-2.0
3,259,674	-		EFB2_03121	0.69	-1.9
3,259,674	-		EFB2_03121	0.69	+1.0
3,259,719	-		EFB2_03121	0.72	+0.5
3,259,719	-		EFB2_03121	0.72	-0.9
3,259,779	+		EFB2_03121	0.77	+0.0
3,259,779	+		EFB2_03121	0.77	-0.9
3,259,779	+		EFB2_03121	0.77	-2.0
3,259,779	+		EFB2_03121	0.77	-0.5
3,259,779	+		EFB2_03121	0.77	-0.9
3,259,780	-		EFB2_03121	0.77	+0.9
3,259,780	-		EFB2_03121	0.77	+1.3