Strain Fitness in Escherichia fergusonii Becca around EFB2_02880

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,016,957	-				-2.3
3,016,969	-				-2.7
3,016,977	+				+1.4
3,016,978	-				-0.4
3,017,001	+				-0.8
3,017,001	+				-3.4
3,017,001	+				-1.3
3,017,002	-				-0.7
3,017,027	+				-2.5
3,017,031	+				+0.7
3,017,031	+				+0.9
3,017,031	+				-0.6
3,017,031	+				-0.9
3,017,031	+				+1.0
3,017,032	-				-0.8
3,017,032	-				-0.8
3,017,032	-				-1.6
3,017,032	-				-0.3
3,017,032	-				+0.7
3,017,032	-				+1.4
3,017,032	-				-0.8
3,017,032	-				-1.9
3,017,032	-				-0.1
3,017,037	+				-1.1
3,017,037	+				+2.9
3,017,037	+				-1.2
3,017,037	+				+0.5
3,017,037	+				-0.3
3,017,037	+				+0.1
3,017,037	+				-3.3
3,017,038	-				+1.1
3,017,038	-				-0.5
3,017,038	-				+0.1
3,017,038	-				-1.1
3,017,038	-				+1.2
3,017,038	-				+0.6
3,017,038	-				+1.7
3,017,038	-				-0.6
3,017,038	-				-0.0
3,017,038	-				+2.8
3,017,038	-				+1.3
3,017,039	+				+2.9
3,017,039	+				-1.3
3,017,039	+				-0.3
3,017,039	+				+2.2
3,017,039	+				+1.2
3,017,039	+				+0.7
3,017,039	+				+1.5
3,017,039	+				-0.9
3,017,039	+				+0.5
3,017,039	+				-1.6
3,017,039	+				+1.3
3,017,039	+				+0.7
3,017,040	-				-0.1
3,017,040	-				-2.1
3,017,040	-				-1.3
3,017,040	-				+0.1
3,017,040	-				+0.6
3,017,040	-				+0.3
3,017,040	-				-2.7
3,017,040	-				-1.4
3,017,040	-				+0.4
3,017,040	-				+0.8
3,017,078	+				+0.3
3,017,079	-				+0.0
3,017,079	-				-1.0
3,017,096	+		EFB2_02879	0.12	-0.8
3,017,096	+		EFB2_02879	0.12	-2.4
3,017,110	+		EFB2_02879	0.14	-1.0
3,017,110	+		EFB2_02879	0.14	+0.7
3,017,110	+		EFB2_02879	0.14	+1.4
3,017,111	-		EFB2_02879	0.14	-0.6
3,017,111	-		EFB2_02879	0.14	+1.9
3,017,111	-		EFB2_02879	0.14	-0.5
3,017,111	-		EFB2_02879	0.14	-1.9
3,017,111	-		EFB2_02879	0.14	+0.7
3,017,111	-		EFB2_02879	0.14	+1.8
3,017,111	-		EFB2_02879	0.14	+1.6
3,017,111	-		EFB2_02879	0.14	+0.2
3,017,111	-		EFB2_02879	0.14	+2.2
3,017,169	+		EFB2_02879	0.21	+0.1
3,017,170	-		EFB2_02879	0.21	+0.2
3,017,170	-		EFB2_02879	0.21	-2.3
3,017,170	-		EFB2_02879	0.21	-0.3
3,017,195	-		EFB2_02879	0.24	+2.2
3,017,209	+		EFB2_02879	0.26	+0.2
3,017,209	+		EFB2_02879	0.26	+2.2
3,017,209	+		EFB2_02879	0.26	+0.0
3,017,210	-		EFB2_02879	0.26	-1.8
3,017,245	+		EFB2_02879	0.30	+1.6
3,017,245	+		EFB2_02879	0.30	-0.6
3,017,246	-		EFB2_02879	0.30	-1.1
3,017,247	+		EFB2_02879	0.30	+1.8
3,017,248	-		EFB2_02879	0.31	-3.4
3,017,252	+		EFB2_02879	0.31	+1.7
3,017,252	+		EFB2_02879	0.31	+0.9
3,017,252	+		EFB2_02879	0.31	-2.3
3,017,252	+		EFB2_02879	0.31	+1.3
3,017,252	+		EFB2_02879	0.31	+1.6
3,017,252	+		EFB2_02879	0.31	-1.5
3,017,252	+		EFB2_02879	0.31	+0.7
3,017,252	+		EFB2_02879	0.31	+1.5
3,017,252	+		EFB2_02879	0.31	-2.5
3,017,252	+		EFB2_02879	0.31	-1.3
3,017,252	+		EFB2_02879	0.31	-0.5
3,017,253	-		EFB2_02879	0.31	-0.4
3,017,253	-		EFB2_02879	0.31	-1.4
3,017,253	-		EFB2_02879	0.31	+0.5
3,017,253	-		EFB2_02879	0.31	-2.3
3,017,253	-		EFB2_02879	0.31	+1.6
3,017,253	-		EFB2_02879	0.31	-1.1
3,017,253	-		EFB2_02879	0.31	-1.0
3,017,253	-		EFB2_02879	0.31	-1.6
3,017,253	-		EFB2_02879	0.31	+0.6
3,017,253	-		EFB2_02879	0.31	-1.6
3,017,253	-		EFB2_02879	0.31	+1.2
3,017,253	-		EFB2_02879	0.31	-0.6
3,017,253	-		EFB2_02879	0.31	-1.0
3,017,253	-		EFB2_02879	0.31	-1.3
3,017,253	-		EFB2_02879	0.31	+0.8
3,017,253	-		EFB2_02879	0.31	-0.1
3,017,253	-		EFB2_02879	0.31	-1.0
3,017,253	-		EFB2_02879	0.31	-1.5
3,017,253	-		EFB2_02879	0.31	-2.3
3,017,279	-		EFB2_02879	0.34	+0.7
3,017,366	+		EFB2_02879	0.45	+1.2
3,017,366	+		EFB2_02879	0.45	+0.9
3,017,367	-		EFB2_02879	0.45	-0.1
3,017,367	-		EFB2_02879	0.45	+2.2
3,017,367	-		EFB2_02879	0.45	-0.1
3,017,367	-		EFB2_02879	0.45	+1.8
3,017,367	-		EFB2_02879	0.45	+1.7
3,017,367	-		EFB2_02879	0.45	+1.0
3,017,383	+		EFB2_02879	0.47	+2.3
3,017,383	+		EFB2_02879	0.47	+0.6
3,017,384	-		EFB2_02879	0.47	-0.1
3,017,392	+		EFB2_02879	0.48	+0.5
3,017,393	-		EFB2_02879	0.49	+1.5
3,017,393	-		EFB2_02879	0.49	-0.8
3,017,395	+		EFB2_02879	0.49	+2.7
3,017,395	+		EFB2_02879	0.49	+3.8
3,017,395	+		EFB2_02879	0.49	+1.2
3,017,436	-		EFB2_02879	0.54	+1.4
3,017,472	+		EFB2_02879	0.58	+1.0
3,017,472	+		EFB2_02879	0.58	+0.7
3,017,473	-		EFB2_02879	0.58	+0.6
3,017,473	-		EFB2_02879	0.58	+1.2
3,017,473	-		EFB2_02879	0.58	-2.1
3,017,473	-		EFB2_02879	0.58	+0.8
3,017,473	-		EFB2_02879	0.58	-0.4
3,017,491	+		EFB2_02879	0.61	-1.0
3,017,536	-		EFB2_02879	0.66	+0.7
3,017,577	-		EFB2_02879	0.71	+0.7
3,017,707	+		EFB2_02879	0.87	+3.6
3,017,716	+		EFB2_02879	0.88	+0.0
3,017,732	-				+0.1
3,017,768	+				-0.3
3,017,768	+				+0.2
3,017,788	+				-0.1
3,017,788	+				+1.8
3,017,788	+				+1.0
3,017,788	+				+1.6
3,017,789	-				-1.0
3,017,789	-				+2.2
3,017,789	-				-0.2
3,017,789	-				-1.4
3,017,789	-				+0.6
3,017,798	-				+1.0
3,017,801	+				+1.2
3,017,801	+				-0.9
3,017,801	+				-0.1
3,017,801	+				-1.2
3,017,801	+				+1.0
3,017,802	-				+0.2
3,017,802	-				-0.4
3,017,802	-				-0.1
3,017,802	-				+0.7
3,017,802	-				-0.4
3,017,810	-				-2.9
3,017,820	+				-0.7
3,017,854	+				+5.0
3,017,871	+				-2.3
3,017,907	+				+0.2
3,017,907	+				+1.2
3,017,907	+				+1.2
3,017,907	+				+3.6
3,017,907	+				+0.3
3,017,907	+				+0.1
3,017,907	+				-2.0
3,017,908	-				+3.4
3,017,908	-				+0.5
3,017,908	-				-0.6
3,017,908	-				+3.4
3,017,908	-				-0.2
3,017,908	-				+0.7
3,017,908	-				-0.5
3,017,908	-				-0.3
3,017,908	-				-0.2
3,017,908	-				-1.3
3,017,908	-				-0.5
3,017,908	-				-1.9
3,017,908	-				+0.1
3,017,909	+				-1.9
3,017,910	-				-1.4
3,017,930	+				-1.5
3,017,930	+				-1.0
3,017,930	+				+0.9
3,017,930	+				-0.4
3,017,930	+				-1.4
3,017,930	+				-0.6
3,017,930	+				-2.7
3,017,931	-				-0.6
3,017,931	-				-0.3
3,017,931	-				-0.8
3,017,931	-				-1.6
3,017,931	-				-0.6
3,017,931	-				+0.2
3,017,931	-				-1.8
3,017,931	-				+1.0
3,017,931	-				-1.4
3,017,931	-				+0.9
3,017,941	-				-3.7
3,017,959	-				-1.7
3,017,959	-				-2.8
3,017,959	-				+2.7
3,017,983	-				-0.6
3,017,983	-				-2.4
3,017,983	-				-2.3
3,017,983	-				-0.6
3,017,983	-				+2.2
3,017,994	-				-0.8
3,017,994	-				-0.6
3,017,994	-				-1.4
3,018,114	-		EFB2_02880	0.15	-1.0
3,018,114	-		EFB2_02880	0.15	-1.0
3,018,114	-		EFB2_02880	0.15	-1.1
3,018,114	-		EFB2_02880	0.15	-1.9
3,018,114	-		EFB2_02880	0.15	-1.1
3,018,118	-		EFB2_02880	0.15	+2.2
3,018,118	-		EFB2_02880	0.15	-3.6
3,018,118	-		EFB2_02880	0.15	-1.7
3,018,118	-		EFB2_02880	0.15	-0.6
3,018,118	-		EFB2_02880	0.15	-0.4
3,018,118	-		EFB2_02880	0.15	+0.6
3,018,118	-		EFB2_02880	0.15	-0.8
3,018,118	-		EFB2_02880	0.15	-0.8
3,018,118	-		EFB2_02880	0.15	-2.3
3,018,120	-		EFB2_02880	0.15	-1.7
3,018,143	-		EFB2_02880	0.17	+0.6
3,018,160	-		EFB2_02880	0.19	-0.1
3,018,160	-		EFB2_02880	0.19	-1.3
3,018,176	-		EFB2_02880	0.20	+2.0
3,018,176	-		EFB2_02880	0.20	+0.2
3,018,250	-		EFB2_02880	0.26	-1.0
3,018,250	-		EFB2_02880	0.26	-0.1
3,018,250	-		EFB2_02880	0.26	-0.1
3,018,250	-		EFB2_02880	0.26	+1.2
3,018,256	-		EFB2_02880	0.26	-0.3
3,018,256	-		EFB2_02880	0.26	+2.3
3,018,364	-		EFB2_02880	0.35	-1.3
3,018,369	-		EFB2_02880	0.35	-1.0
3,018,369	-		EFB2_02880	0.35	-1.1
3,018,369	-		EFB2_02880	0.35	-1.1
3,018,369	-		EFB2_02880	0.35	-1.4
3,018,369	-		EFB2_02880	0.35	+1.2
3,018,369	-		EFB2_02880	0.35	-0.1
3,018,369	-		EFB2_02880	0.35	+2.2
3,018,369	-		EFB2_02880	0.35	+1.7
3,018,441	-		EFB2_02880	0.41	-0.2
3,018,452	-		EFB2_02880	0.42	+0.2
3,018,460	-		EFB2_02880	0.43	-0.4
3,018,529	-		EFB2_02880	0.48	-2.6
3,018,541	-		EFB2_02880	0.49	-2.4
3,018,545	-		EFB2_02880	0.50	-1.9
3,018,545	-		EFB2_02880	0.50	-1.4
3,018,545	-		EFB2_02880	0.50	-0.4
3,018,545	-		EFB2_02880	0.50	-0.1
3,018,545	-		EFB2_02880	0.50	-0.4
3,018,586	-		EFB2_02880	0.53	-0.6
3,018,586	-		EFB2_02880	0.53	-1.1
3,018,633	-		EFB2_02880	0.57	-0.1
3,018,640	-		EFB2_02880	0.57	-0.6
3,018,643	-		EFB2_02880	0.57	+0.6
3,018,643	-		EFB2_02880	0.57	-0.5
3,018,679	-		EFB2_02880	0.60	-1.6
3,018,719	+		EFB2_02880	0.64	-0.4
3,018,720	-		EFB2_02880	0.64	-0.8
3,018,720	-		EFB2_02880	0.64	+0.9
3,018,720	-		EFB2_02880	0.64	-0.6
3,018,720	-		EFB2_02880	0.64	+1.9
3,018,720	-		EFB2_02880	0.64	-0.4
3,018,720	-		EFB2_02880	0.64	-0.4
3,018,720	-		EFB2_02880	0.64	+0.2
3,018,720	-		EFB2_02880	0.64	-1.5
3,018,720	-		EFB2_02880	0.64	-2.5
3,018,720	-		EFB2_02880	0.64	-1.0
3,018,720	-		EFB2_02880	0.64	-1.3
3,018,720	-		EFB2_02880	0.64	-1.4
3,018,787	-		EFB2_02880	0.69	-1.0
3,018,787	-		EFB2_02880	0.69	-1.3
3,018,985	-		EFB2_02880	0.85	-0.1
3,018,985	-		EFB2_02880	0.85	-0.6
3,019,000	-		EFB2_02880	0.86	+1.4
3,019,010	-		EFB2_02880	0.87	-2.1
3,019,010	-		EFB2_02880	0.87	-1.3
3,019,013	-		EFB2_02880	0.87	-0.8
3,019,013	-		EFB2_02880	0.87	+0.2
3,019,013	-		EFB2_02880	0.87	-2.9
3,019,013	-		EFB2_02880	0.87	+0.6
3,019,013	-		EFB2_02880	0.87	-2.2
3,019,013	-		EFB2_02880	0.87	-0.8
3,019,013	-		EFB2_02880	0.87	-1.4
3,019,035	-		EFB2_02880	0.89	-0.8
3,019,042	-		EFB2_02880	0.90	-0.8
3,019,102	-				+0.3
3,019,102	-				-0.6
3,019,109	-				-1.5
3,019,154	-				-0.6
3,019,154	-				-0.1
3,019,154	-				-2.0
3,019,154	-				-0.6
3,019,154	-				+0.2
3,019,154	-				-0.8
3,019,165	-				-1.3
3,019,165	-				-2.1
3,019,165	-				+3.5
3,019,165	-				+1.2
3,019,203	-				-1.8
3,019,203	-				+1.2
3,019,597	-				-1.4
3,019,645	-				-0.2
3,019,645	-				-0.8
3,019,649	-				-0.1
3,019,649	-				+0.7
3,019,649	-				+2.8
3,019,649	-				-2.0
3,019,649	-				+0.4
3,019,649	-				-0.5
3,019,649	-				-2.0
3,019,649	-				-0.7
3,019,649	-				-0.3
3,019,649	-				+0.4
3,019,649	-				+1.5
3,019,649	-				-1.1
3,019,651	+				+0.6
3,019,652	-				-1.1
3,019,652	-				-2.2
3,019,652	-				+0.2
3,019,658	-				-1.9
3,019,658	-				-0.9
3,019,658	-				+0.6
3,019,658	-				+0.2
3,019,714	+				+0.2
3,019,714	+				+0.6
3,019,714	+				-0.8
3,019,715	-				+2.2
3,019,715	-				-0.6
3,019,715	-				-1.9
3,019,715	-				-0.1
3,019,715	-				-0.8
3,019,715	-				-1.5
3,019,715	-				+0.6
3,019,715	-				-0.1
3,019,715	-				+1.0
3,019,715	-				-1.3
3,019,715	-				+0.2