Strain Fitness in Escherichia fergusonii Becca around EFB2_02689

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,846,081	-		EFB2_02688	0.37	+2.2
2,846,081	-		EFB2_02688	0.37	-1.7
2,846,084	+		EFB2_02688	0.37	+4.3
2,846,084	+		EFB2_02688	0.37	-2.3
2,846,085	-		EFB2_02688	0.37	+0.9
2,846,085	-		EFB2_02688	0.37	-1.2
2,846,085	-		EFB2_02688	0.37	-0.4
2,846,085	-		EFB2_02688	0.37	-2.0
2,846,085	-		EFB2_02688	0.37	-0.7
2,846,085	-		EFB2_02688	0.37	+3.7
2,846,102	-		EFB2_02688	0.40	-1.2
2,846,102	-		EFB2_02688	0.40	-0.7
2,846,122	-		EFB2_02688	0.43	+1.4
2,846,125	+		EFB2_02688	0.44	+2.2
2,846,126	-		EFB2_02688	0.44	+2.6
2,846,147	-		EFB2_02688	0.47	+1.5
2,846,180	+		EFB2_02688	0.53	-1.4
2,846,180	+		EFB2_02688	0.53	-1.8
2,846,181	-		EFB2_02688	0.53	+0.5
2,846,181	-		EFB2_02688	0.53	-0.3
2,846,182	+		EFB2_02688	0.53	-0.4
2,846,182	+		EFB2_02688	0.53	+0.7
2,846,182	+		EFB2_02688	0.53	-1.2
2,846,183	-		EFB2_02688	0.53	+1.0
2,846,183	-		EFB2_02688	0.53	+0.7
2,846,183	-		EFB2_02688	0.53	-2.6
2,846,183	-		EFB2_02688	0.53	-0.3
2,846,183	-		EFB2_02688	0.53	-0.7
2,846,183	-		EFB2_02688	0.53	-0.3
2,846,183	-		EFB2_02688	0.53	+1.0
2,846,183	-		EFB2_02688	0.53	+0.0
2,846,183	-		EFB2_02688	0.53	-0.4
2,846,183	-		EFB2_02688	0.53	-1.3
2,846,183	-		EFB2_02688	0.53	-1.4
2,846,222	-		EFB2_02688	0.59	-0.7
2,846,270	-		EFB2_02688	0.67	+3.1
2,846,287	-		EFB2_02688	0.70	-1.0
2,846,315	-		EFB2_02688	0.74	+1.3
2,846,315	-		EFB2_02688	0.74	-0.0
2,846,315	-		EFB2_02688	0.74	-0.7
2,846,315	-		EFB2_02688	0.74	+2.2
2,846,317	-		EFB2_02688	0.75	+0.9
2,846,364	+		EFB2_02688	0.82	-3.2
2,846,365	-		EFB2_02688	0.83	-0.5
2,846,366	+		EFB2_02688	0.83	+2.5
2,846,366	+		EFB2_02688	0.83	+0.4
2,846,366	+		EFB2_02688	0.83	+1.7
2,846,366	+		EFB2_02688	0.83	-1.5
2,846,367	-		EFB2_02688	0.83	+2.3
2,846,367	-		EFB2_02688	0.83	-0.9
2,846,367	-		EFB2_02688	0.83	-1.2
2,846,367	-		EFB2_02688	0.83	-2.1
2,846,367	-		EFB2_02688	0.83	+1.2
2,846,367	-		EFB2_02688	0.83	+0.7
2,846,368	+		EFB2_02688	0.83	-1.6
2,846,369	-		EFB2_02688	0.83	-0.7
2,846,369	-		EFB2_02688	0.83	+1.6
2,846,369	-		EFB2_02688	0.83	-1.9
2,846,369	-		EFB2_02688	0.83	+0.7
2,846,369	-		EFB2_02688	0.83	+0.2
2,846,369	-		EFB2_02688	0.83	+0.6
2,846,369	-		EFB2_02688	0.83	+0.5
2,846,369	-		EFB2_02688	0.83	+1.7
2,846,369	-		EFB2_02688	0.83	+1.9
2,846,369	-		EFB2_02688	0.83	-0.1
2,846,369	-		EFB2_02688	0.83	-1.9
2,846,402	+		EFB2_02688	0.89	-1.4
2,846,425	-				+0.6
2,846,431	-				-2.3
2,846,450	+				-1.5
2,846,454	-				+1.0
2,846,454	-				-2.0
2,846,459	+				-1.2
2,846,459	+				+0.3
2,846,459	+				-1.0
2,846,460	-				-1.5
2,846,460	-				+1.1
2,846,460	-				+6.7
2,846,460	-				+1.6
2,846,460	-				-2.9
2,846,460	-				+0.3
2,846,461	+				+2.3
2,846,461	+				+0.4
2,846,462	-				+0.8
2,846,462	-				-1.3
2,846,493	+				-0.1
2,846,494	-				-1.5
2,846,500	+				+1.7
2,846,501	-				+1.4
2,846,523	-				-1.2
2,846,549	+				-1.0
2,846,549	+				-1.3
2,846,549	+				-1.4
2,846,550	-				-2.2
2,846,550	-				+0.8
2,846,550	-				-0.2
2,846,550	-				+0.4
2,846,564	+				+1.5
2,846,564	+				+1.1
2,846,565	-				-0.5
2,846,565	-				-1.4
2,846,565	-				+0.2
2,846,565	-				+2.5
2,846,565	-				+0.4
2,846,565	-				-3.7
2,846,565	-				+1.2
2,846,565	-				+0.8
2,846,566	+				-1.2
2,846,566	+				-2.2
2,846,566	+				+0.4
2,846,566	+				+0.4
2,846,566	+				+0.8
2,846,566	+				+1.0
2,846,567	-				+2.1
2,846,567	-				+0.2
2,846,567	-				+1.3
2,846,567	-				+1.1
2,846,567	-				+1.5
2,846,567	-				+1.3
2,846,567	-				+0.6
2,846,581	-				+0.3
2,846,594	+				-1.2
2,846,594	+				-2.7
2,846,595	-				+0.3
2,846,595	-				-1.0
2,846,608	+				+0.8
2,846,608	+				+0.4
2,846,609	-				-1.9
2,846,614	+				+1.6
2,846,614	+				-1.6
2,846,614	+				-0.6
2,846,614	+				-2.3
2,846,614	+				+1.3
2,846,615	-				+0.5
2,846,615	-				+0.6
2,846,615	-				-0.0
2,846,615	-				+0.9
2,846,615	-				+2.8
2,846,615	-				+1.3
2,846,615	-				-1.6
2,846,632	+				-1.5
2,846,633	-				+0.8
2,846,633	-				+2.3
2,846,633	-				+0.7
2,846,634	+				+0.4
2,846,634	+				-0.5
2,846,635	-				+1.8
2,846,635	-				-0.7
2,846,635	-				-2.8
2,846,635	-				+1.6
2,846,635	-				-0.9
2,846,642	+				+0.7
2,846,642	+				+0.9
2,846,661	-				-0.0
2,846,689	+				+2.0
2,846,689	+				-2.5
2,846,689	+				+0.4
2,846,689	+				+0.7
2,846,689	+				+2.8
2,846,689	+				+0.2
2,846,689	+				+2.3
2,846,689	+				+0.5
2,846,689	+				+1.7
2,846,689	+				+1.0
2,846,690	-				-0.0
2,846,690	-				-0.3
2,846,690	-				-1.1
2,846,690	-				-0.4
2,846,690	-				+0.8
2,846,690	-				-2.8
2,846,690	-				-2.6
2,846,690	-				-2.0
2,846,690	-				-0.4
2,846,690	-				-2.7
2,846,690	-				-2.2
2,846,690	-				-0.3
2,846,690	-				-0.5
2,846,690	-				+1.4
2,846,693	-				-0.1
2,846,693	-				+0.4
2,846,693	-				-1.2
2,846,693	-				-0.0
2,846,717	+				-0.9
2,846,718	-				-1.8
2,846,725	+				-1.4
2,846,725	+				-0.7
2,846,725	+				-1.6
2,846,725	+				-2.3
2,846,725	+				-3.4
2,846,725	+				+0.7
2,846,725	+				+1.6
2,846,726	-				+0.0
2,846,726	-				+0.9
2,846,728	+				+0.5
2,846,728	+				-0.5
2,846,729	-				-2.2
2,846,729	-				+0.1
2,846,729	-				-1.2
2,846,756	+				-2.4
2,846,757	-				+1.9
2,846,801	-				-0.4
2,846,801	-				+1.0
2,846,801	-				+1.8
2,846,804	-				-0.4
2,846,829	+				+0.2
2,846,835	+				+2.8
2,846,836	-				-2.8
2,846,836	-				+0.8
2,846,836	-				-2.9
2,846,905	+				-0.7
2,846,911	+				+0.3
2,846,911	+				+0.1
2,846,912	-				+0.7
2,846,912	-				-1.8
2,846,912	-				-2.5
2,846,912	-				+0.7
2,846,912	-				+1.0
2,846,914	-				-2.3
2,847,366	+		EFB2_02689	0.70	+2.2
2,847,366	+		EFB2_02689	0.70	+0.7
2,847,370	+		EFB2_02689	0.71	-1.1
2,847,370	+		EFB2_02689	0.71	+0.3
2,847,370	+		EFB2_02689	0.71	-1.5
2,847,370	+		EFB2_02689	0.71	+0.4
2,847,370	+		EFB2_02689	0.71	-1.3
2,847,370	+		EFB2_02689	0.71	-0.0
2,847,370	+		EFB2_02689	0.71	-1.9
2,847,370	+		EFB2_02689	0.71	+0.5
2,847,417	+		EFB2_02689	0.82	-0.8
2,847,456	+				-0.3
2,847,456	+				-1.3
2,847,559	+				+0.4
2,847,559	+				-0.3
2,847,560	-				+0.4
2,847,560	-				-2.3
2,847,560	-				+2.3
2,847,560	-				+1.3
2,847,560	-				-3.3
2,847,560	-				-0.0
2,847,560	-				-0.4
2,847,561	+				-0.0
2,847,562	-				-2.7
2,847,562	-				-0.5
2,847,562	-				+0.3
2,847,562	-				-2.0
2,847,562	-				-1.7
2,847,562	-				-1.2
2,847,565	-				+0.3
2,847,570	+				+3.3
2,847,570	+				-0.7
2,847,571	-				-1.2
2,847,571	-				+2.8
2,847,571	-				-1.5
2,847,571	-				+0.3
2,847,571	-				-0.1
2,847,571	-				+0.2
2,847,571	-				+1.5
2,847,571	-				-1.7
2,847,571	-				+4.3
2,847,576	-				+0.8
2,847,634	+				-1.7
2,847,635	-				-1.5
2,847,635	-				+2.3
2,847,635	-				+0.8
2,847,635	-				+0.8
2,847,642	-				+0.8
2,847,886	-		EFB2_02690	0.28	-0.9