Strain Fitness in Escherichia fergusonii Becca around EFB2_02360

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,494,066	+				-1.3
2,494,066	+				+0.3
2,494,069	+				-1.3
2,494,069	+				+1.3
2,494,093	+				-0.6
2,494,122	-				+0.1
2,494,132	-				+0.8
2,494,140	-				+0.5
2,494,140	-				+0.6
2,494,259	+				+0.7
2,494,259	+				-0.9
2,494,291	+				-0.2
2,494,291	+				+0.1
2,494,301	+				+2.0
2,494,363	+				+0.2
2,494,397	+				+0.0
2,494,397	+				+0.1
2,494,397	+				-1.8
2,494,398	-				-0.3
2,494,398	-				-0.3
2,494,398	-				+1.5
2,494,398	-				+0.9
2,494,398	-				-0.4
2,494,419	-				-1.2
2,494,419	-				-2.0
2,494,437	+				+0.1
2,494,438	-				-1.3
2,494,440	+				-2.7
2,494,440	+				-0.6
2,494,441	-				-1.2
2,494,441	-				-0.4
2,494,441	-				+0.1
2,494,441	-				+0.3
2,494,441	-				-0.8
2,494,441	-				-1.2
2,494,441	-				+0.0
2,494,441	-				+1.6
2,494,441	-				+1.3
2,494,441	-				-2.4
2,494,476	+		EFB2_02359	0.13	+0.8
2,494,476	+		EFB2_02359	0.13	-0.4
2,494,476	+		EFB2_02359	0.13	-1.6
2,494,476	+		EFB2_02359	0.13	-0.4
2,494,477	-		EFB2_02359	0.13	-1.7
2,494,477	-		EFB2_02359	0.13	-0.9
2,494,477	-		EFB2_02359	0.13	+0.4
2,494,479	-		EFB2_02359	0.13	-2.2
2,494,544	-		EFB2_02359	0.23	+1.1
2,494,556	-		EFB2_02359	0.25	+2.3
2,494,556	-		EFB2_02359	0.25	+0.2
2,494,556	-		EFB2_02359	0.25	+1.1
2,494,591	-		EFB2_02359	0.31	-0.2
2,494,629	+		EFB2_02359	0.37	+1.4
2,494,630	-		EFB2_02359	0.37	+0.3
2,494,630	-		EFB2_02359	0.37	-1.3
2,494,630	-		EFB2_02359	0.37	+0.5
2,494,630	-		EFB2_02359	0.37	+0.4
2,494,654	+		EFB2_02359	0.41	-1.0
2,494,655	-		EFB2_02359	0.41	-2.1
2,494,655	-		EFB2_02359	0.41	-0.4
2,494,658	-		EFB2_02359	0.41	+1.9
2,494,658	-		EFB2_02359	0.41	+0.6
2,494,731	+		EFB2_02359	0.53	-0.8
2,494,731	+		EFB2_02359	0.53	-0.4
2,494,731	+		EFB2_02359	0.53	+1.2
2,494,731	+		EFB2_02359	0.53	-3.2
2,494,732	-		EFB2_02359	0.53	+0.8
2,494,732	-		EFB2_02359	0.53	-2.0
2,494,732	-		EFB2_02359	0.53	+0.5
2,494,732	-		EFB2_02359	0.53	-0.2
2,494,732	-		EFB2_02359	0.53	-2.8
2,494,732	-		EFB2_02359	0.53	-1.0
2,494,732	-		EFB2_02359	0.53	-1.5
2,494,745	-		EFB2_02359	0.55	+0.4
2,494,745	-		EFB2_02359	0.55	+0.1
2,494,747	+		EFB2_02359	0.55	+1.4
2,494,748	-		EFB2_02359	0.55	+1.1
2,494,748	-		EFB2_02359	0.55	-0.8
2,494,748	-		EFB2_02359	0.55	+0.5
2,494,748	-		EFB2_02359	0.55	-0.6
2,494,748	-		EFB2_02359	0.55	+2.4
2,494,748	-		EFB2_02359	0.55	+0.2
2,494,748	-		EFB2_02359	0.55	-0.8
2,494,748	-		EFB2_02359	0.55	+0.3
2,494,748	-		EFB2_02359	0.55	-0.9
2,494,748	-		EFB2_02359	0.55	-1.8
2,494,748	-		EFB2_02359	0.55	-2.9
2,494,748	-		EFB2_02359	0.55	-0.3
2,494,749	+		EFB2_02359	0.56	+0.8
2,494,749	+		EFB2_02359	0.56	+0.4
2,494,749	+		EFB2_02359	0.56	+0.6
2,494,750	-		EFB2_02359	0.56	-3.3
2,494,750	-		EFB2_02359	0.56	+1.2
2,494,750	-		EFB2_02359	0.56	-0.1
2,494,750	-		EFB2_02359	0.56	-1.6
2,494,750	-		EFB2_02359	0.56	+1.6
2,494,750	-		EFB2_02359	0.56	-0.1
2,494,750	-		EFB2_02359	0.56	-1.6
2,494,750	-		EFB2_02359	0.56	+1.4
2,494,767	+		EFB2_02359	0.58	-0.4
2,494,785	+		EFB2_02359	0.61	+2.8
2,494,786	-		EFB2_02359	0.61	+0.2
2,494,786	-		EFB2_02359	0.61	-2.7
2,494,786	-		EFB2_02359	0.61	-0.8
2,494,788	-		EFB2_02359	0.62	+2.9
2,494,788	-		EFB2_02359	0.62	+1.1
2,494,808	+		EFB2_02359	0.65	-0.8
2,494,808	+		EFB2_02359	0.65	+0.4
2,494,808	+		EFB2_02359	0.65	+0.1
2,494,808	+		EFB2_02359	0.65	+0.6
2,494,809	-		EFB2_02359	0.65	-2.0
2,494,809	-		EFB2_02359	0.65	+1.4
2,494,809	-		EFB2_02359	0.65	-0.3
2,494,809	-		EFB2_02359	0.65	+1.4
2,494,809	-		EFB2_02359	0.65	-2.6
2,494,809	-		EFB2_02359	0.65	-0.6
2,494,854	+		EFB2_02359	0.72	-0.4
2,494,854	+		EFB2_02359	0.72	+2.4
2,494,855	-		EFB2_02359	0.72	-0.3
2,494,855	-		EFB2_02359	0.72	-0.7
2,494,855	-		EFB2_02359	0.72	-0.6
2,494,855	-		EFB2_02359	0.72	-1.2
2,494,855	-		EFB2_02359	0.72	+0.1
2,494,855	-		EFB2_02359	0.72	-1.3
2,494,855	-		EFB2_02359	0.72	+0.1
2,494,858	-		EFB2_02359	0.73	-0.6
2,494,858	-		EFB2_02359	0.73	+1.7
2,494,869	-		EFB2_02359	0.74	+1.4
2,494,888	-		EFB2_02359	0.77	+1.6
2,494,888	-		EFB2_02359	0.77	-1.2
2,494,888	-		EFB2_02359	0.77	-0.5
2,494,888	-		EFB2_02359	0.77	-1.0
2,494,890	+		EFB2_02359	0.78	-0.8
2,494,891	-		EFB2_02359	0.78	+0.0
2,494,891	-		EFB2_02359	0.78	-0.9
2,495,012	-				+0.2
2,495,085	-				+2.1
2,495,117	-		EFB2_02360	0.12	-1.8
2,495,148	-		EFB2_02360	0.17	+1.0
2,495,148	-		EFB2_02360	0.17	-1.2
2,495,211	+		EFB2_02360	0.26	-1.4
2,495,212	-		EFB2_02360	0.26	+0.8
2,495,215	-		EFB2_02360	0.26	-0.9
2,495,215	-		EFB2_02360	0.26	-0.2
2,495,229	-		EFB2_02360	0.28	-2.2
2,495,229	-		EFB2_02360	0.28	+0.2
2,495,229	-		EFB2_02360	0.28	+1.9
2,495,229	-		EFB2_02360	0.28	+1.4
2,495,229	-		EFB2_02360	0.28	-1.8
2,495,229	-		EFB2_02360	0.28	-0.0
2,495,232	+		EFB2_02360	0.29	+0.4
2,495,232	+		EFB2_02360	0.29	-0.4
2,495,233	-		EFB2_02360	0.29	+0.4
2,495,233	-		EFB2_02360	0.29	+0.8
2,495,233	-		EFB2_02360	0.29	-0.9
2,495,233	-		EFB2_02360	0.29	-0.2
2,495,233	-		EFB2_02360	0.29	+0.8
2,495,233	-		EFB2_02360	0.29	+0.2
2,495,233	-		EFB2_02360	0.29	-0.4
2,495,284	-		EFB2_02360	0.36	-1.4
2,495,399	+		EFB2_02360	0.53	-1.0
2,495,399	+		EFB2_02360	0.53	-0.8
2,495,399	+		EFB2_02360	0.53	+1.4
2,495,400	-		EFB2_02360	0.53	-1.6
2,495,400	-		EFB2_02360	0.53	+1.7
2,495,406	-		EFB2_02360	0.54	-2.0
2,495,443	+		EFB2_02360	0.59	-0.9
2,495,443	+		EFB2_02360	0.59	-1.4
2,495,443	+		EFB2_02360	0.59	+2.4
2,495,443	+		EFB2_02360	0.59	+0.6
2,495,444	-		EFB2_02360	0.59	-0.7
2,495,444	-		EFB2_02360	0.59	-1.8
2,495,458	+		EFB2_02360	0.61	-2.6
2,495,459	-		EFB2_02360	0.61	-0.6
2,495,479	-		EFB2_02360	0.64	+1.6
2,495,512	+		EFB2_02360	0.69	-2.2
2,495,513	-		EFB2_02360	0.69	-1.2
2,495,513	-		EFB2_02360	0.69	+0.6
2,495,513	-		EFB2_02360	0.69	-1.4
2,495,513	-		EFB2_02360	0.69	-1.6
2,495,513	-		EFB2_02360	0.69	+1.3
2,495,513	-		EFB2_02360	0.69	-1.4
2,495,592	-		EFB2_02360	0.81	-0.8
2,495,705	+				-0.2
2,495,706	-				+1.1
2,495,715	-				+0.9
2,495,731	+				+2.6
2,495,731	+				+1.1
2,495,732	-				+1.3
2,495,782	+				+0.2
2,495,783	-				+0.8
2,495,808	-		EFB2_02361	0.13	-0.2
2,495,825	+		EFB2_02361	0.15	-0.4
2,495,826	-		EFB2_02361	0.15	+1.4
2,496,003	+		EFB2_02361	0.44	+2.4
2,496,004	-		EFB2_02361	0.44	-1.1
2,496,004	-		EFB2_02361	0.44	-0.6
2,496,004	-		EFB2_02361	0.44	-0.0
2,496,116	-		EFB2_02361	0.62	+0.7
2,496,116	-		EFB2_02361	0.62	-1.8
2,496,116	-		EFB2_02361	0.62	+1.3
2,496,116	-		EFB2_02361	0.62	-1.5
2,496,135	-		EFB2_02361	0.65	-2.4
2,496,135	-		EFB2_02361	0.65	+0.5
2,496,138	+		EFB2_02361	0.66	+0.4
2,496,139	-		EFB2_02361	0.66	-0.5
2,496,139	-		EFB2_02361	0.66	+0.5
2,496,139	-		EFB2_02361	0.66	+0.5
2,496,139	-		EFB2_02361	0.66	-0.7
2,496,139	-		EFB2_02361	0.66	-1.2
2,496,139	-		EFB2_02361	0.66	-0.1
2,496,139	-		EFB2_02361	0.66	-1.3
2,496,154	-		EFB2_02361	0.68	-2.9
2,496,154	-		EFB2_02361	0.68	-1.8
2,496,154	-		EFB2_02361	0.68	+0.8
2,496,154	-		EFB2_02361	0.68	+2.4
2,496,160	+		EFB2_02361	0.69	-0.4
2,496,160	+		EFB2_02361	0.69	+2.4
2,496,161	-		EFB2_02361	0.69	-1.6
2,496,161	-		EFB2_02361	0.69	-1.6
2,496,161	-		EFB2_02361	0.69	-1.0
2,496,161	-		EFB2_02361	0.69	+0.4
2,496,161	-		EFB2_02361	0.69	+2.3
2,496,185	+		EFB2_02361	0.73	-0.1
2,496,185	+		EFB2_02361	0.73	+2.8
2,496,185	+		EFB2_02361	0.73	+1.2
2,496,186	-		EFB2_02361	0.73	+0.8
2,496,186	-		EFB2_02361	0.73	-0.7
2,496,186	-		EFB2_02361	0.73	+0.4
2,496,187	+		EFB2_02361	0.74	+2.4
2,496,187	+		EFB2_02361	0.74	-1.3
2,496,187	+		EFB2_02361	0.74	-1.8
2,496,188	-		EFB2_02361	0.74	-1.3
2,496,188	-		EFB2_02361	0.74	-1.5
2,496,188	-		EFB2_02361	0.74	-1.4
2,496,188	-		EFB2_02361	0.74	-1.0
2,496,217	-		EFB2_02361	0.78	-0.1
2,496,286	-		EFB2_02361	0.90	-2.6
2,496,286	-		EFB2_02361	0.90	-1.4
2,496,286	-		EFB2_02361	0.90	+1.1
2,496,320	+				-0.2
2,496,320	+				-1.2
2,496,320	+				+0.1
2,496,320	+				-0.2
2,496,321	-				+2.2
2,496,321	-				-0.0
2,496,321	-				+0.4
2,496,321	-				-2.3
2,496,321	-				-2.7
2,496,321	-				+2.1
2,496,321	-				-2.4
2,496,321	-				+0.0
2,496,321	-				-0.4
2,496,374	-				+0.8
2,496,374	-				-1.6
2,496,391	+				+1.0
2,496,392	-				+0.2
2,496,392	-				-0.9
2,496,392	-				-0.1
2,496,394	+				+0.1
2,496,394	+				+1.7
2,496,395	-				+1.2
2,496,455	-				+1.4
2,496,484	-		EFB2_02362	0.12	-1.2
2,496,484	-		EFB2_02362	0.12	-0.7
2,496,484	-		EFB2_02362	0.12	-2.9
2,496,484	-		EFB2_02362	0.12	-1.0
2,496,484	-		EFB2_02362	0.12	+0.8
2,496,484	-		EFB2_02362	0.12	-1.2
2,496,484	-		EFB2_02362	0.12	-1.6
2,496,484	-		EFB2_02362	0.12	-2.2
2,496,484	-		EFB2_02362	0.12	-0.5
2,496,484	-		EFB2_02362	0.12	+0.4
2,496,484	-		EFB2_02362	0.12	-0.6
2,496,484	-		EFB2_02362	0.12	+0.4
2,496,484	-		EFB2_02362	0.12	+1.4
2,496,484	-		EFB2_02362	0.12	+0.4
2,496,486	+		EFB2_02362	0.12	-1.7
2,496,487	-		EFB2_02362	0.13	+0.7
2,496,487	-		EFB2_02362	0.13	-1.4
2,496,530	+		EFB2_02362	0.17	-1.6
2,496,531	-		EFB2_02362	0.17	+0.8
2,496,618	-		EFB2_02362	0.25	+1.1
2,496,664	-		EFB2_02362	0.29	+0.1
2,496,666	+		EFB2_02362	0.29	-1.0
2,496,667	-		EFB2_02362	0.30	-1.0
2,496,667	-		EFB2_02362	0.30	+0.2
2,496,667	-		EFB2_02362	0.30	+0.3
2,496,667	-		EFB2_02362	0.30	+0.2
2,496,667	-		EFB2_02362	0.30	-1.9