Strain Fitness in Escherichia fergusonii Becca around EFB2_01125

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,175,790	+		EFB2_01124	0.34	-0.2
1,175,791	-		EFB2_01124	0.34	-1.3
1,175,791	-		EFB2_01124	0.34	-2.2
1,175,791	-		EFB2_01124	0.34	+0.4
1,175,815	+		EFB2_01124	0.38	-0.1
1,175,816	-		EFB2_01124	0.38	+0.2
1,175,823	+		EFB2_01124	0.40	+0.1
1,175,823	+		EFB2_01124	0.40	-1.3
1,175,823	+		EFB2_01124	0.40	+0.4
1,175,823	+		EFB2_01124	0.40	-3.5
1,175,823	+		EFB2_01124	0.40	+1.1
1,175,824	-		EFB2_01124	0.40	-0.4
1,175,824	-		EFB2_01124	0.40	-0.5
1,175,824	-		EFB2_01124	0.40	+1.6
1,175,824	-		EFB2_01124	0.40	+0.2
1,175,824	-		EFB2_01124	0.40	-0.4
1,175,824	-		EFB2_01124	0.40	-0.8
1,175,824	-		EFB2_01124	0.40	-0.2
1,175,824	-		EFB2_01124	0.40	+1.2
1,175,824	-		EFB2_01124	0.40	+0.7
1,175,824	-		EFB2_01124	0.40	-0.1
1,175,824	-		EFB2_01124	0.40	-1.7
1,175,839	+		EFB2_01124	0.43	+0.1
1,175,839	+		EFB2_01124	0.43	+1.1
1,175,839	+		EFB2_01124	0.43	+1.0
1,175,846	+		EFB2_01124	0.44	-0.9
1,175,846	+		EFB2_01124	0.44	-0.2
1,175,846	+		EFB2_01124	0.44	+0.7
1,175,846	+		EFB2_01124	0.44	-3.1
1,175,846	+		EFB2_01124	0.44	+0.5
1,175,846	+		EFB2_01124	0.44	-2.7
1,175,846	+		EFB2_01124	0.44	-0.5
1,175,846	+		EFB2_01124	0.44	-1.7
1,175,846	+		EFB2_01124	0.44	+0.0
1,175,847	-		EFB2_01124	0.44	-1.8
1,175,847	-		EFB2_01124	0.44	-1.4
1,175,847	-		EFB2_01124	0.44	-0.1
1,175,847	-		EFB2_01124	0.44	+0.1
1,175,847	-		EFB2_01124	0.44	-1.5
1,175,847	-		EFB2_01124	0.44	+0.4
1,175,847	-		EFB2_01124	0.44	-1.7
1,175,847	-		EFB2_01124	0.44	+0.1
1,175,847	-		EFB2_01124	0.44	-0.7
1,175,848	+		EFB2_01124	0.44	-1.5
1,175,848	+		EFB2_01124	0.44	-0.2
1,175,848	+		EFB2_01124	0.44	+0.4
1,175,848	+		EFB2_01124	0.44	-0.6
1,175,848	+		EFB2_01124	0.44	-1.4
1,175,848	+		EFB2_01124	0.44	+2.4
1,175,849	-		EFB2_01124	0.45	-0.8
1,175,849	-		EFB2_01124	0.45	-2.4
1,175,849	-		EFB2_01124	0.45	-0.1
1,175,849	-		EFB2_01124	0.45	-0.7
1,175,982	+		EFB2_01124	0.69	+1.2
1,175,983	-		EFB2_01124	0.69	+0.1
1,176,000	+		EFB2_01124	0.72	+0.8
1,176,000	+		EFB2_01124	0.72	-1.5
1,176,000	+		EFB2_01124	0.72	+1.3
1,176,001	-		EFB2_01124	0.72	-1.2
1,176,001	-		EFB2_01124	0.72	-1.0
1,176,001	-		EFB2_01124	0.72	+1.9
1,176,001	-		EFB2_01124	0.72	-1.3
1,176,027	+		EFB2_01124	0.77	-2.3
1,176,027	+		EFB2_01124	0.77	-0.2
1,176,027	+		EFB2_01124	0.77	-0.1
1,176,028	-		EFB2_01124	0.77	+0.6
1,176,028	-		EFB2_01124	0.77	+0.7
1,176,028	-		EFB2_01124	0.77	-1.3
1,176,028	-		EFB2_01124	0.77	-1.0
1,176,028	-		EFB2_01124	0.77	-0.7
1,176,046	+		EFB2_01124	0.81	-1.1
1,176,046	+		EFB2_01124	0.81	-2.0
1,176,046	+		EFB2_01124	0.81	+0.4
1,176,046	+		EFB2_01124	0.81	+1.6
1,176,046	+		EFB2_01124	0.81	-2.1
1,176,046	+		EFB2_01124	0.81	+0.1
1,176,047	-		EFB2_01124	0.81	+0.2
1,176,047	-		EFB2_01124	0.81	-1.3
1,176,047	-		EFB2_01124	0.81	+1.1
1,176,047	-		EFB2_01124	0.81	+0.3
1,176,047	-		EFB2_01124	0.81	-0.4
1,176,047	-		EFB2_01124	0.81	-0.2
1,176,047	-		EFB2_01124	0.81	+0.2
1,176,047	-		EFB2_01124	0.81	+0.2
1,176,047	-		EFB2_01124	0.81	+0.3
1,176,088	+		EFB2_01124	0.88	-1.5
1,176,088	+		EFB2_01124	0.88	-0.4
1,176,088	+		EFB2_01124	0.88	+0.7
1,176,088	+		EFB2_01124	0.88	+2.3
1,176,088	+		EFB2_01124	0.88	+1.9
1,176,089	-		EFB2_01124	0.88	+1.6
1,176,089	-		EFB2_01124	0.88	+1.5
1,176,102	+				+2.3
1,176,102	+				-0.8
1,176,102	+				-0.6
1,176,103	-				-2.8
1,176,136	+				+0.1
1,176,136	+				-1.5
1,176,136	+				-3.1
1,176,136	+				-0.4
1,176,136	+				+0.8
1,176,136	+				+0.2
1,176,136	+				+2.9
1,176,136	+				+1.0
1,176,137	-				-0.1
1,176,137	-				-1.3
1,176,137	-				-2.6
1,176,137	-				-0.9
1,176,137	-				+0.8
1,176,149	+				-1.5
1,176,158	+				+2.2
1,176,159	-				-1.1
1,176,185	+				-0.2
1,176,185	+				-3.3
1,176,214	+				+0.2
1,176,214	+				+0.9
1,176,222	+				-2.5
1,176,223	-				-0.1
1,176,319	+				+0.0
1,176,330	+				-2.7
1,176,330	+				-0.7
1,176,330	+				+0.1
1,176,331	-				+0.5
1,176,331	-				-1.2
1,176,331	-				+0.5
1,176,355	+				+0.2
1,176,355	+				-0.1
1,176,355	+				+0.3
1,176,355	+				-0.2
1,176,355	+				+0.8
1,176,355	+				+0.8
1,176,356	-				-0.2
1,176,356	-				+0.2
1,176,356	-				-0.9
1,176,356	-				+0.1
1,176,356	-				+0.3
1,176,356	-				+0.8
1,176,567	+				-0.7
1,176,567	+				+1.5
1,176,567	+				-0.0
1,176,567	+				+0.9
1,176,567	+				+0.3
1,176,567	+				-0.6
1,176,567	+				+0.1
1,176,567	+				-1.7
1,176,567	+				-2.4
1,176,567	+				+0.0
1,176,599	+				-0.1
1,176,599	+				+2.1
1,176,599	+				-0.6
1,176,599	+				-0.4
1,176,599	+				-0.9
1,176,599	+				+0.7
1,176,599	+				+0.8
1,176,599	+				+1.2
1,176,599	+				-0.5
1,176,599	+				-0.7
1,176,599	+				+1.4
1,176,599	+				+0.3
1,176,709	+				+0.9
1,176,709	+				-0.5
1,176,709	+				-1.4
1,176,709	+				+1.1
1,176,709	+				-0.7
1,176,709	+				-1.0
1,176,709	+				-0.3
1,176,709	+				-1.2
1,176,710	-				+1.2
1,176,710	-				+1.2
1,176,728	-				-1.3
1,176,736	+				+1.8
1,176,758	+				-3.1
1,176,758	+				+0.3
1,176,772	+				-0.3
1,176,773	-				-0.0
1,176,773	-				-0.5
1,176,773	-				-1.8
1,176,773	-				+0.5
1,176,823	-		EFB2_01125	0.15	+0.9
1,176,823	-		EFB2_01125	0.15	+1.1
1,176,823	-		EFB2_01125	0.15	+0.2
1,176,895	+		EFB2_01125	0.37	+1.2
1,176,896	-		EFB2_01125	0.37	+0.5
1,176,960	+		EFB2_01125	0.57	+0.8
1,176,960	+		EFB2_01125	0.57	+0.2
1,176,960	+		EFB2_01125	0.57	-0.4
1,176,961	-		EFB2_01125	0.57	-0.9
1,176,961	-		EFB2_01125	0.57	-0.4
1,176,961	-		EFB2_01125	0.57	-0.6
1,176,961	-		EFB2_01125	0.57	+1.4
1,176,961	-		EFB2_01125	0.57	+0.2
1,176,961	-		EFB2_01125	0.57	-1.0
1,176,961	-		EFB2_01125	0.57	+1.1
1,176,964	+		EFB2_01125	0.58	+1.3
1,176,964	+		EFB2_01125	0.58	+0.6
1,176,964	+		EFB2_01125	0.58	+0.9
1,176,964	+		EFB2_01125	0.58	-0.8
1,176,964	+		EFB2_01125	0.58	-2.0
1,176,964	+		EFB2_01125	0.58	+1.2
1,176,965	-		EFB2_01125	0.58	+1.1
1,176,965	-		EFB2_01125	0.58	+1.6
1,176,965	-		EFB2_01125	0.58	-1.1
1,176,965	-		EFB2_01125	0.58	+0.6
1,176,965	-		EFB2_01125	0.58	-3.0
1,176,965	-		EFB2_01125	0.58	-0.8
1,176,965	-		EFB2_01125	0.58	+0.2
1,176,965	-		EFB2_01125	0.58	+1.2
1,177,004	+		EFB2_01125	0.70	-0.4
1,177,005	-		EFB2_01125	0.70	-1.8
1,177,005	-		EFB2_01125	0.70	+0.5
1,177,007	+		EFB2_01125	0.71	+0.2
1,177,007	+		EFB2_01125	0.71	-0.9
1,177,007	+		EFB2_01125	0.71	+1.0
1,177,008	-		EFB2_01125	0.71	+1.3
1,177,008	-		EFB2_01125	0.71	-1.0
1,177,008	-		EFB2_01125	0.71	-0.7
1,177,008	-		EFB2_01125	0.71	-0.4
1,177,048	+		EFB2_01125	0.83	+0.4
1,177,048	+		EFB2_01125	0.83	-1.9
1,177,048	+		EFB2_01125	0.83	-0.6
1,177,048	+		EFB2_01125	0.83	-0.2
1,177,048	+		EFB2_01125	0.83	+0.6
1,177,048	+		EFB2_01125	0.83	-1.1
1,177,048	+		EFB2_01125	0.83	+1.6
1,177,048	+		EFB2_01125	0.83	-1.1
1,177,049	-		EFB2_01125	0.84	+2.2
1,177,049	-		EFB2_01125	0.84	+0.2
1,177,049	-		EFB2_01125	0.84	-0.1
1,177,100	+				+0.1
1,177,100	+				+1.1
1,177,100	+				+0.2
1,177,100	+				-2.8
1,177,100	+				-0.3
1,177,100	+				-0.6
1,177,101	-				-0.6
1,177,101	-				-0.3
1,177,101	-				+1.2
1,177,101	-				-2.7
1,177,101	-				-3.5
1,177,101	-				-0.2
1,177,101	-				-0.0
1,177,101	-				+0.2
1,177,101	-				-2.4
1,177,112	+				+0.0
1,177,112	+				-1.0
1,177,112	+				+1.2
1,177,112	+				-1.0
1,177,112	+				-1.7
1,177,112	+				-1.3
1,177,112	+				-1.0
1,177,112	+				+0.5
1,177,112	+				+0.8
1,177,112	+				-0.2
1,177,112	+				+0.3
1,177,112	+				+0.7
1,177,112	+				+0.6
1,177,112	+				+1.5
1,177,112	+				-0.3
1,177,112	+				-0.9
1,177,112	+				+1.6
1,177,112	+				-0.6
1,177,112	+				-1.9
1,177,113	-				-1.9
1,177,113	-				+1.3
1,177,113	-				+2.4
1,177,113	-				-1.1
1,177,113	-				+1.5
1,177,113	-				-0.1
1,177,113	-				-2.0
1,177,113	-				-2.0
1,177,117	+				-0.1
1,177,118	-				-0.2
1,177,118	-				+0.5
1,177,118	-				+0.5
1,177,118	-				-1.0
1,177,143	-				+1.2
1,177,143	-				-1.2
1,177,143	-				-1.0
1,177,143	-				+0.7
1,177,146	+				+0.7
1,177,146	+				-0.4
1,177,146	+				+1.1
1,177,146	+				-0.9
1,177,146	+				+1.2
1,177,146	+				+0.8
1,177,146	+				-0.0
1,177,147	-				+1.0
1,177,147	-				-1.0
1,177,199	+		EFB2_01126	0.12	-0.1
1,177,199	+		EFB2_01126	0.12	-0.1
1,177,199	+		EFB2_01126	0.12	-0.1
1,177,199	+		EFB2_01126	0.12	-0.5
1,177,200	-		EFB2_01126	0.13	-0.6
1,177,200	-		EFB2_01126	0.13	-0.3
1,177,200	-		EFB2_01126	0.13	+0.4
1,177,200	-		EFB2_01126	0.13	+1.3
1,177,200	-		EFB2_01126	0.13	-0.8
1,177,229	+		EFB2_01126	0.16	-1.8
1,177,229	+		EFB2_01126	0.16	-0.3
1,177,230	-		EFB2_01126	0.16	+2.2
1,177,246	-		EFB2_01126	0.18	-4.0
1,177,246	-		EFB2_01126	0.18	+0.2
1,177,358	-		EFB2_01126	0.33	+0.8
1,177,441	-		EFB2_01126	0.43	+0.4
1,177,458	+		EFB2_01126	0.45	+2.2
1,177,458	+		EFB2_01126	0.45	+0.1
1,177,459	-		EFB2_01126	0.46	+1.1
1,177,487	-		EFB2_01126	0.49	+0.1
1,177,487	-		EFB2_01126	0.49	-2.5
1,177,505	+		EFB2_01126	0.51	-1.5
1,177,505	+		EFB2_01126	0.51	-0.0
1,177,556	+		EFB2_01126	0.58	-1.3
1,177,556	+		EFB2_01126	0.58	+1.1
1,177,556	+		EFB2_01126	0.58	+0.2
1,177,557	-		EFB2_01126	0.58	+0.8
1,177,557	-		EFB2_01126	0.58	+0.1
1,177,557	-		EFB2_01126	0.58	-0.4
1,177,557	-		EFB2_01126	0.58	+1.3
1,177,557	-		EFB2_01126	0.58	-0.5
1,177,581	+		EFB2_01126	0.61	-2.5
1,177,581	+		EFB2_01126	0.61	-1.6
1,177,581	+		EFB2_01126	0.61	+0.9
1,177,581	+		EFB2_01126	0.61	+0.4
1,177,581	+		EFB2_01126	0.61	+0.6
1,177,581	+		EFB2_01126	0.61	+0.2
1,177,581	+		EFB2_01126	0.61	-0.6
1,177,581	+		EFB2_01126	0.61	-0.4
1,177,581	+		EFB2_01126	0.61	-0.8
1,177,581	+		EFB2_01126	0.61	-1.1
1,177,581	+		EFB2_01126	0.61	+1.5
1,177,581	+		EFB2_01126	0.61	-0.5
1,177,581	+		EFB2_01126	0.61	+0.2
1,177,582	-		EFB2_01126	0.61	+0.2
1,177,582	-		EFB2_01126	0.61	-1.0
1,177,582	-		EFB2_01126	0.61	-1.3
1,177,582	-		EFB2_01126	0.61	-0.9
1,177,582	-		EFB2_01126	0.61	-1.4
1,177,582	-		EFB2_01126	0.61	-0.9
1,177,582	-		EFB2_01126	0.61	+0.1
1,177,582	-		EFB2_01126	0.61	-2.1
1,177,582	-		EFB2_01126	0.61	-0.4
1,177,582	-		EFB2_01126	0.61	-0.4
1,177,582	-		EFB2_01126	0.61	-0.6
1,177,582	-		EFB2_01126	0.61	+0.6
1,177,582	-		EFB2_01126	0.61	-0.8
1,177,582	-		EFB2_01126	0.61	+1.3
1,177,582	-		EFB2_01126	0.61	+0.1
1,177,582	-		EFB2_01126	0.61	-0.2
1,177,582	-		EFB2_01126	0.61	-0.4
1,177,582	-		EFB2_01126	0.61	+1.1
1,177,582	-		EFB2_01126	0.61	-0.5
1,177,582	-		EFB2_01126	0.61	+0.7
1,177,582	-		EFB2_01126	0.61	+0.5
1,177,626	+		EFB2_01126	0.67	-1.4
1,177,626	+		EFB2_01126	0.67	-3.2
1,177,653	-		EFB2_01126	0.70	+1.4
1,177,698	-		EFB2_01126	0.76	+0.2
1,177,710	+		EFB2_01126	0.78	+0.2
1,177,711	-		EFB2_01126	0.78	+0.7
1,177,711	-		EFB2_01126	0.78	-0.0
1,177,711	-		EFB2_01126	0.78	-0.6
1,177,711	-		EFB2_01126	0.78	-0.2
1,177,711	-		EFB2_01126	0.78	+2.2
1,177,711	-		EFB2_01126	0.78	-0.9
1,177,737	+		EFB2_01126	0.81	+0.9
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