Strain Fitness in Escherichia fergusonii Becca around EFB2_01025

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,055,776	+				+0.1
1,055,776	+				+0.6
1,055,776	+				-0.4
1,055,776	+				+1.2
1,055,776	+				+1.6
1,055,777	-				-2.7
1,055,777	-				+0.6
1,055,781	+				-1.3
1,055,781	+				-3.3
1,055,781	+				+0.4
1,055,781	+				-0.7
1,055,781	+				-0.6
1,055,781	+				-0.4
1,055,781	+				-1.6
1,055,781	+				+0.9
1,055,781	+				-1.7
1,055,781	+				+0.6
1,055,781	+				-0.7
1,055,781	+				+0.4
1,055,782	-				-1.1
1,055,782	-				+0.8
1,055,782	-				+1.6
1,055,782	-				+0.1
1,055,782	-				-0.2
1,055,782	-				+0.0
1,055,782	-				+1.1
1,055,782	-				-0.7
1,055,782	-				-0.4
1,055,783	+				-1.6
1,055,783	+				+0.5
1,055,783	+				+0.3
1,055,783	+				+0.5
1,055,783	+				+0.8
1,055,783	+				+1.2
1,055,783	+				-0.1
1,055,784	-				+2.2
1,055,784	-				-0.8
1,055,784	-				+1.7
1,055,784	-				-0.4
1,055,784	-				+0.5
1,055,784	-				+0.3
1,055,784	-				-1.6
1,055,784	-				-1.3
1,055,784	-				+1.6
1,055,784	-				-0.7
1,055,784	-				+0.6
1,055,784	-				-1.3
1,055,784	-				-2.5
1,055,784	-				-1.1
1,055,784	-				+1.1
1,055,784	-				+0.3
1,055,784	-				-0.9
1,055,784	-				+1.8
1,055,789	+				-1.1
1,055,789	+				+0.5
1,055,789	+				-2.0
1,055,789	+				-1.5
1,055,789	+				+0.2
1,055,790	-				-1.3
1,055,790	-				-1.1
1,055,790	-				-0.1
1,055,790	-				+0.4
1,055,790	-				+0.3
1,055,790	-				+0.3
1,055,790	-				+1.4
1,055,827	-				+2.3
1,055,876	+				-0.8
1,055,877	-				-1.4
1,055,877	-				+0.3
1,055,877	-				+1.4
1,055,879	-				+0.1
1,055,905	+				-3.3
1,055,986	-				-0.1
1,055,986	-				+0.0
1,056,022	+				-2.1
1,056,028	+				-1.1
1,056,029	-				-2.9
1,056,029	-				+0.3
1,056,029	-				+2.3
1,056,029	-				+0.2
1,056,034	-				-0.1
1,056,034	-				-0.4
1,056,052	+				-1.8
1,056,056	+				+0.1
1,056,079	-				-0.9
1,056,079	-				-1.6
1,056,100	-				-0.4
1,056,119	-				+1.6
1,056,140	-				-1.7
1,056,140	-				+0.8
1,056,144	-		EFB2_01024	0.10	+0.0
1,056,177	+		EFB2_01024	0.16	+1.7
1,056,177	+		EFB2_01024	0.16	+1.0
1,056,177	+		EFB2_01024	0.16	-1.0
1,056,178	-		EFB2_01024	0.16	+0.7
1,056,178	-		EFB2_01024	0.16	-0.0
1,056,178	-		EFB2_01024	0.16	+1.0
1,056,208	+		EFB2_01024	0.21	+0.2
1,056,209	-		EFB2_01024	0.21	+1.6
1,056,209	-		EFB2_01024	0.21	-0.9
1,056,286	+		EFB2_01024	0.35	-2.3
1,056,340	+		EFB2_01024	0.44	-0.5
1,056,361	+		EFB2_01024	0.47	-0.4
1,056,361	+		EFB2_01024	0.47	-0.4
1,056,362	-		EFB2_01024	0.48	-1.2
1,056,416	+		EFB2_01024	0.57	-0.6
1,056,416	+		EFB2_01024	0.57	-1.9
1,056,417	-		EFB2_01024	0.57	-0.1
1,056,429	-		EFB2_01024	0.59	-0.1
1,056,441	+		EFB2_01024	0.61	-1.2
1,056,441	+		EFB2_01024	0.61	-3.3
1,056,457	+		EFB2_01024	0.64	+0.1
1,056,460	+		EFB2_01024	0.65	-0.7
1,056,460	+		EFB2_01024	0.65	-0.5
1,056,460	+		EFB2_01024	0.65	-0.1
1,056,460	+		EFB2_01024	0.65	-1.1
1,056,460	+		EFB2_01024	0.65	+0.7
1,056,460	+		EFB2_01024	0.65	+2.2
1,056,461	-		EFB2_01024	0.65	-0.3
1,056,461	-		EFB2_01024	0.65	+1.2
1,056,461	-		EFB2_01024	0.65	-2.5
1,056,467	-		EFB2_01024	0.66	-1.6
1,056,467	-		EFB2_01024	0.66	-0.4
1,056,484	-		EFB2_01024	0.69	+0.7
1,056,502	+		EFB2_01024	0.72	-2.1
1,056,502	+		EFB2_01024	0.72	-2.8
1,056,503	-		EFB2_01024	0.72	-2.3
1,056,521	+		EFB2_01024	0.75	-2.5
1,056,526	+		EFB2_01024	0.76	-1.2
1,056,527	-		EFB2_01024	0.76	-1.6
1,056,559	+		EFB2_01024	0.82	-2.9
1,056,559	+		EFB2_01024	0.82	+1.7
1,056,565	+		EFB2_01024	0.83	+0.3
1,056,565	+		EFB2_01024	0.83	+1.7
1,056,566	-		EFB2_01024	0.83	+0.4
1,056,566	-		EFB2_01024	0.83	+4.5
1,056,626	+				+0.0
1,056,640	+				+3.0
1,056,644	+				-0.4
1,056,645	-				+0.3
1,056,645	-				+1.0
1,056,645	-				+1.2
1,056,645	-				+0.4
1,056,645	-				-0.4
1,056,645	-				-0.6
1,056,645	-				-1.3
1,056,645	-				-1.0
1,056,646	+				-1.4
1,056,646	+				+0.5
1,056,646	+				+1.2
1,056,646	+				-0.2
1,056,646	+				+0.6
1,056,646	+				+0.1
1,056,646	+				-3.5
1,056,646	+				+0.9
1,056,646	+				+1.0
1,056,647	-				-3.3
1,056,647	-				+0.0
1,056,647	-				+0.6
1,056,647	-				+0.3
1,056,647	-				-2.1
1,056,647	-				+0.3
1,056,647	-				-0.6
1,056,664	+				+1.2
1,056,664	+				+1.7
1,056,665	-				-0.6
1,056,665	-				-1.8
1,056,676	+				-2.5
1,056,677	-				+1.9
1,056,680	+				+0.1
1,056,681	-				-3.8
1,056,689	+				-2.3
1,056,690	-				+1.0
1,056,690	-				+0.4
1,056,692	+				-1.0
1,056,692	+				+0.8
1,056,693	-				-1.7
1,056,693	-				-0.6
1,056,702	+				-0.9
1,056,703	-				+1.0
1,056,712	-				+2.1
1,056,727	-				-3.1
1,056,737	+				-0.5
1,056,737	+				+1.9
1,056,737	+				-0.6
1,056,742	+				-2.0
1,056,743	-				+1.1
1,056,759	+				+1.8
1,056,777	-				-0.1
1,056,778	+				-0.1
1,056,778	+				+0.4
1,056,779	-				-3.2
1,056,796	+				-0.5
1,056,797	-				+0.4
1,056,797	-				-0.9
1,056,839	+				+0.5
1,056,839	+				-2.2
1,056,840	-				+0.7
1,056,840	-				-1.3
1,056,840	-				-0.2
1,056,840	-				-1.2
1,056,840	-				+0.5
1,056,913	+		EFB2_01025	0.19	+1.4
1,056,913	+		EFB2_01025	0.19	-0.5
1,056,913	+		EFB2_01025	0.19	+2.0
1,056,913	+		EFB2_01025	0.19	-3.0
1,056,913	+		EFB2_01025	0.19	+0.3
1,056,913	+		EFB2_01025	0.19	+0.2
1,056,913	+		EFB2_01025	0.19	+0.2
1,056,913	+		EFB2_01025	0.19	+0.5
1,056,913	+		EFB2_01025	0.19	+0.6
1,056,913	+		EFB2_01025	0.19	+0.2
1,056,914	-		EFB2_01025	0.19	+1.5
1,056,914	-		EFB2_01025	0.19	-2.6
1,056,914	-		EFB2_01025	0.19	+0.9
1,056,914	-		EFB2_01025	0.19	-0.8
1,056,914	-		EFB2_01025	0.19	-0.1
1,056,914	-		EFB2_01025	0.19	-0.4
1,056,914	-		EFB2_01025	0.19	-1.4
1,056,914	-		EFB2_01025	0.19	-0.5
1,056,914	-		EFB2_01025	0.19	+1.8
1,056,916	+		EFB2_01025	0.19	-1.5
1,056,916	+		EFB2_01025	0.19	+0.5
1,056,916	+		EFB2_01025	0.19	-1.5
1,056,916	+		EFB2_01025	0.19	+0.5
1,056,916	+		EFB2_01025	0.19	+0.8
1,056,916	+		EFB2_01025	0.19	-0.6
1,056,916	+		EFB2_01025	0.19	+0.4
1,056,917	-		EFB2_01025	0.19	+0.1
1,056,917	-		EFB2_01025	0.19	+1.4
1,056,917	-		EFB2_01025	0.19	-0.0
1,056,917	-		EFB2_01025	0.19	+1.0
1,056,917	-		EFB2_01025	0.19	+0.5
1,056,917	-		EFB2_01025	0.19	+1.5
1,056,917	-		EFB2_01025	0.19	-0.7
1,056,924	-		EFB2_01025	0.20	+0.3
1,056,935	+		EFB2_01025	0.22	+0.9
1,056,935	+		EFB2_01025	0.22	+1.6
1,056,935	+		EFB2_01025	0.22	+0.6
1,056,935	+		EFB2_01025	0.22	-1.1
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,935	+		EFB2_01025	0.22	+1.2
1,056,935	+		EFB2_01025	0.22	+0.8
1,056,935	+		EFB2_01025	0.22	-3.6
1,056,935	+		EFB2_01025	0.22	-0.6
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,935	+		EFB2_01025	0.22	-0.2
1,056,935	+		EFB2_01025	0.22	-1.4
1,056,935	+		EFB2_01025	0.22	-0.1
1,056,935	+		EFB2_01025	0.22	-1.6
1,056,935	+		EFB2_01025	0.22	-0.8
1,056,935	+		EFB2_01025	0.22	-2.1
1,056,935	+		EFB2_01025	0.22	+1.2
1,056,935	+		EFB2_01025	0.22	-1.1
1,056,935	+		EFB2_01025	0.22	-0.1
1,056,935	+		EFB2_01025	0.22	-0.9
1,056,935	+		EFB2_01025	0.22	-2.2
1,056,935	+		EFB2_01025	0.22	+2.6
1,056,935	+		EFB2_01025	0.22	+2.2
1,056,935	+		EFB2_01025	0.22	-2.7
1,056,935	+		EFB2_01025	0.22	-1.2
1,056,935	+		EFB2_01025	0.22	+0.9
1,056,935	+		EFB2_01025	0.22	+1.2
1,056,935	+		EFB2_01025	0.22	-0.7
1,056,935	+		EFB2_01025	0.22	-0.1
1,056,935	+		EFB2_01025	0.22	+0.3
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	-1.3
1,056,935	+		EFB2_01025	0.22	-1.0
1,056,935	+		EFB2_01025	0.22	+0.9
1,056,935	+		EFB2_01025	0.22	-0.2
1,056,935	+		EFB2_01025	0.22	+1.4
1,056,935	+		EFB2_01025	0.22	-2.1
1,056,935	+		EFB2_01025	0.22	+0.4
1,056,935	+		EFB2_01025	0.22	+0.9
1,056,935	+		EFB2_01025	0.22	-0.9
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	+0.1
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	-0.2
1,056,935	+		EFB2_01025	0.22	+0.3
1,056,935	+		EFB2_01025	0.22	-1.5
1,056,935	+		EFB2_01025	0.22	+0.8
1,056,935	+		EFB2_01025	0.22	-1.0
1,056,935	+		EFB2_01025	0.22	+1.1
1,056,935	+		EFB2_01025	0.22	-3.0
1,056,935	+		EFB2_01025	0.22	-0.1
1,056,935	+		EFB2_01025	0.22	-1.7
1,056,935	+		EFB2_01025	0.22	-0.9
1,056,935	+		EFB2_01025	0.22	-0.8
1,056,935	+		EFB2_01025	0.22	+0.1
1,056,935	+		EFB2_01025	0.22	+1.0
1,056,935	+		EFB2_01025	0.22	-1.5
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	-1.1
1,056,935	+		EFB2_01025	0.22	-0.3
1,056,935	+		EFB2_01025	0.22	+0.4
1,056,935	+		EFB2_01025	0.22	-0.8
1,056,935	+		EFB2_01025	0.22	-0.6
1,056,935	+		EFB2_01025	0.22	-0.4
1,056,935	+		EFB2_01025	0.22	-2.6
1,056,935	+		EFB2_01025	0.22	+0.4
1,056,935	+		EFB2_01025	0.22	+0.1
1,056,935	+		EFB2_01025	0.22	-0.8
1,056,935	+		EFB2_01025	0.22	-3.7
1,056,935	+		EFB2_01025	0.22	+0.5
1,056,936	-		EFB2_01025	0.22	-2.3
1,056,936	-		EFB2_01025	0.22	-0.2
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	-1.8
1,056,936	-		EFB2_01025	0.22	-1.7
1,056,936	-		EFB2_01025	0.22	+0.6
1,056,936	-		EFB2_01025	0.22	-1.3
1,056,936	-		EFB2_01025	0.22	+0.8
1,056,936	-		EFB2_01025	0.22	+2.3
1,056,936	-		EFB2_01025	0.22	-1.4
1,056,936	-		EFB2_01025	0.22	-0.9
1,056,936	-		EFB2_01025	0.22	+0.6
1,056,936	-		EFB2_01025	0.22	+0.6
1,056,936	-		EFB2_01025	0.22	+1.5
1,056,936	-		EFB2_01025	0.22	+1.0
1,056,936	-		EFB2_01025	0.22	+0.5
1,056,936	-		EFB2_01025	0.22	+0.7
1,056,936	-		EFB2_01025	0.22	+1.3
1,056,936	-		EFB2_01025	0.22	-2.5
1,056,936	-		EFB2_01025	0.22	-0.7
1,056,936	-		EFB2_01025	0.22	+1.4
1,056,936	-		EFB2_01025	0.22	+1.9
1,056,936	-		EFB2_01025	0.22	-2.8
1,056,936	-		EFB2_01025	0.22	+3.6
1,056,936	-		EFB2_01025	0.22	-1.6
1,056,936	-		EFB2_01025	0.22	-0.9
1,056,936	-		EFB2_01025	0.22	-0.8
1,056,936	-		EFB2_01025	0.22	-1.6
1,056,936	-		EFB2_01025	0.22	-0.5
1,056,936	-		EFB2_01025	0.22	+0.6
1,056,936	-		EFB2_01025	0.22	-1.4
1,056,936	-		EFB2_01025	0.22	+1.0
1,056,936	-		EFB2_01025	0.22	+1.2
1,056,936	-		EFB2_01025	0.22	-1.6
1,056,936	-		EFB2_01025	0.22	+0.1
1,056,936	-		EFB2_01025	0.22	-0.2
1,056,936	-		EFB2_01025	0.22	-0.0
1,056,936	-		EFB2_01025	0.22	+1.2
1,056,936	-		EFB2_01025	0.22	-2.5
1,056,936	-		EFB2_01025	0.22	+0.3
1,056,936	-		EFB2_01025	0.22	-2.1
1,056,936	-		EFB2_01025	0.22	+0.8
1,056,936	-		EFB2_01025	0.22	+0.1
1,056,936	-		EFB2_01025	0.22	-0.5
1,056,936	-		EFB2_01025	0.22	+1.6
1,056,936	-		EFB2_01025	0.22	+0.1
1,056,936	-		EFB2_01025	0.22	-0.1
1,056,936	-		EFB2_01025	0.22	+0.8
1,056,936	-		EFB2_01025	0.22	-0.2
1,056,936	-		EFB2_01025	0.22	+1.3
1,056,936	-		EFB2_01025	0.22	-1.7
1,056,936	-		EFB2_01025	0.22	-0.9
1,056,936	-		EFB2_01025	0.22	-1.1
1,056,936	-		EFB2_01025	0.22	-1.3
1,056,936	-		EFB2_01025	0.22	+0.5
1,056,936	-		EFB2_01025	0.22	+1.1
1,056,936	-		EFB2_01025	0.22	+0.1
1,056,936	-		EFB2_01025	0.22	-1.5
1,056,936	-		EFB2_01025	0.22	+0.2
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