Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04105

Experiment: pectate 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04104 and BACOVA_04105 are separated by 32 nucleotidesBACOVA_04105 and BACOVA_04106 are separated by 22 nucleotides BACOVA_04104: BACOVA_04104 - hypothetical protein, at 441,136 to 442,713 _04104 BACOVA_04105: BACOVA_04105 - hypothetical protein, at 442,746 to 443,810 _04105 BACOVA_04106: BACOVA_04106 - hypothetical protein, at 443,833 to 445,044 _04106 Position (kb) 442 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 441.760 kb on - strand, within BACOVA_04104at 441.763 kb on + strand, within BACOVA_04104at 441.763 kb on + strand, within BACOVA_04104at 441.769 kb on - strand, within BACOVA_04104at 441.825 kb on - strand, within BACOVA_04104at 441.828 kb on + strand, within BACOVA_04104at 441.829 kb on - strand, within BACOVA_04104at 441.829 kb on - strand, within BACOVA_04104at 441.840 kb on + strand, within BACOVA_04104at 441.844 kb on - strand, within BACOVA_04104at 441.863 kb on - strand, within BACOVA_04104at 441.889 kb on - strand, within BACOVA_04104at 441.900 kb on + strand, within BACOVA_04104at 441.912 kb on + strand, within BACOVA_04104at 441.928 kb on - strand, within BACOVA_04104at 441.928 kb on - strand, within BACOVA_04104at 441.962 kb on - strand, within BACOVA_04104at 441.974 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.009 kb on - strand, within BACOVA_04104at 442.009 kb on - strand, within BACOVA_04104at 442.009 kb on - strand, within BACOVA_04104at 442.015 kb on + strand, within BACOVA_04104at 442.028 kb on - strand, within BACOVA_04104at 442.091 kb on - strand, within BACOVA_04104at 442.117 kb on + strand, within BACOVA_04104at 442.122 kb on + strand, within BACOVA_04104at 442.122 kb on + strand, within BACOVA_04104at 442.129 kb on - strand, within BACOVA_04104at 442.129 kb on - strand, within BACOVA_04104at 442.176 kb on + strand, within BACOVA_04104at 442.176 kb on + strand, within BACOVA_04104at 442.177 kb on - strand, within BACOVA_04104at 442.210 kb on - strand, within BACOVA_04104at 442.245 kb on - strand, within BACOVA_04104at 442.270 kb on + strand, within BACOVA_04104at 442.271 kb on - strand, within BACOVA_04104at 442.282 kb on - strand, within BACOVA_04104at 442.321 kb on - strand, within BACOVA_04104at 442.321 kb on - strand, within BACOVA_04104at 442.364 kb on - strand, within BACOVA_04104at 442.367 kb on + strand, within BACOVA_04104at 442.367 kb on + strand, within BACOVA_04104at 442.367 kb on + strand, within BACOVA_04104at 442.384 kb on - strand, within BACOVA_04104at 442.404 kb on + strand, within BACOVA_04104at 442.404 kb on + strand, within BACOVA_04104at 442.405 kb on - strand, within BACOVA_04104at 442.412 kb on + strand, within BACOVA_04104at 442.417 kb on - strand, within BACOVA_04104at 442.432 kb on - strand, within BACOVA_04104at 442.463 kb on + strand, within BACOVA_04104at 442.466 kb on + strand, within BACOVA_04104at 442.519 kb on + strand, within BACOVA_04104at 442.553 kb on + strand, within BACOVA_04104at 442.568 kb on + strandat 442.593 kb on + strandat 442.615 kb on + strandat 442.623 kb on + strandat 442.632 kb on + strandat 442.633 kb on - strandat 442.638 kb on - strandat 442.638 kb on - strandat 442.649 kb on + strandat 442.675 kb on + strandat 442.684 kb on - strandat 442.684 kb on - strandat 442.684 kb on - strandat 442.707 kb on + strandat 442.718 kb on + strandat 442.719 kb on - strandat 442.721 kb on + strandat 442.724 kb on - strandat 442.724 kb on - strandat 442.724 kb on - strandat 442.728 kb on + strandat 442.733 kb on + strandat 442.737 kb on - strandat 442.737 kb on - strandat 442.746 kb on - strandat 442.746 kb on - strandat 442.756 kb on + strandat 442.761 kb on + strandat 442.762 kb on - strandat 442.768 kb on + strandat 442.848 kb on - strandat 442.876 kb on - strand, within BACOVA_04105at 442.879 kb on - strand, within BACOVA_04105at 442.899 kb on - strand, within BACOVA_04105at 443.061 kb on + strand, within BACOVA_04105at 443.062 kb on - strand, within BACOVA_04105at 443.066 kb on - strand, within BACOVA_04105at 443.103 kb on - strand, within BACOVA_04105at 443.145 kb on - strand, within BACOVA_04105at 443.151 kb on - strand, within BACOVA_04105at 443.184 kb on - strand, within BACOVA_04105at 443.195 kb on + strand, within BACOVA_04105at 443.196 kb on - strand, within BACOVA_04105at 443.218 kb on + strand, within BACOVA_04105at 443.225 kb on + strand, within BACOVA_04105at 443.226 kb on - strand, within BACOVA_04105at 443.226 kb on - strand, within BACOVA_04105at 443.226 kb on - strand, within BACOVA_04105at 443.228 kb on + strand, within BACOVA_04105at 443.229 kb on - strand, within BACOVA_04105at 443.229 kb on - strand, within BACOVA_04105at 443.234 kb on + strand, within BACOVA_04105at 443.234 kb on + strand, within BACOVA_04105at 443.235 kb on - strand, within BACOVA_04105at 443.235 kb on - strand, within BACOVA_04105at 443.239 kb on - strand, within BACOVA_04105at 443.244 kb on + strand, within BACOVA_04105at 443.245 kb on - strand, within BACOVA_04105at 443.265 kb on + strand, within BACOVA_04105at 443.291 kb on + strand, within BACOVA_04105at 443.315 kb on + strand, within BACOVA_04105at 443.316 kb on - strand, within BACOVA_04105at 443.316 kb on - strand, within BACOVA_04105at 443.381 kb on - strand, within BACOVA_04105at 443.405 kb on + strand, within BACOVA_04105at 443.410 kb on + strand, within BACOVA_04105at 443.427 kb on + strand, within BACOVA_04105at 443.455 kb on - strand, within BACOVA_04105at 443.471 kb on + strand, within BACOVA_04105at 443.516 kb on - strand, within BACOVA_04105at 443.556 kb on - strand, within BACOVA_04105at 443.559 kb on - strand, within BACOVA_04105at 443.563 kb on - strand, within BACOVA_04105at 443.654 kb on + strand, within BACOVA_04105at 443.655 kb on - strand, within BACOVA_04105at 443.720 kb on + strandat 443.720 kb on + strandat 443.720 kb on + strandat 443.721 kb on - strandat 443.721 kb on - strandat 443.733 kb on + strandat 443.736 kb on - strandat 443.736 kb on - strandat 443.747 kb on + strandat 443.766 kb on + strandat 443.767 kb on - strandat 443.767 kb on - strandat 443.767 kb on - strandat 443.803 kb on + strandat 443.823 kb on + strandat 443.823 kb on + strandat 443.860 kb on - strandat 443.865 kb on - strandat 443.928 kb on + strandat 444.010 kb on - strand, within BACOVA_04106at 444.077 kb on + strand, within BACOVA_04106at 444.098 kb on + strand, within BACOVA_04106at 444.099 kb on - strand, within BACOVA_04106at 444.100 kb on + strand, within BACOVA_04106at 444.105 kb on + strand, within BACOVA_04106at 444.132 kb on + strand, within BACOVA_04106at 444.148 kb on + strand, within BACOVA_04106at 444.174 kb on + strand, within BACOVA_04106at 444.202 kb on - strand, within BACOVA_04106at 444.202 kb on - strand, within BACOVA_04106at 444.202 kb on - strand, within BACOVA_04106at 444.202 kb on - strand, within BACOVA_04106at 444.212 kb on + strand, within BACOVA_04106at 444.277 kb on - strand, within BACOVA_04106at 444.277 kb on - strand, within BACOVA_04106at 444.332 kb on - strand, within BACOVA_04106at 444.333 kb on + strand, within BACOVA_04106at 444.333 kb on + strand, within BACOVA_04106at 444.334 kb on - strand, within BACOVA_04106at 444.351 kb on + strand, within BACOVA_04106at 444.352 kb on - strand, within BACOVA_04106at 444.391 kb on - strand, within BACOVA_04106at 444.393 kb on + strand, within BACOVA_04106at 444.414 kb on + strand, within BACOVA_04106at 444.415 kb on - strand, within BACOVA_04106at 444.415 kb on - strand, within BACOVA_04106at 444.415 kb on - strand, within BACOVA_04106at 444.420 kb on - strand, within BACOVA_04106at 444.448 kb on - strand, within BACOVA_04106at 444.448 kb on - strand, within BACOVA_04106at 444.494 kb on + strand, within BACOVA_04106at 444.504 kb on + strand, within BACOVA_04106at 444.504 kb on + strand, within BACOVA_04106at 444.607 kb on - strand, within BACOVA_04106at 444.630 kb on + strand, within BACOVA_04106at 444.630 kb on + strand, within BACOVA_04106at 444.715 kb on + strand, within BACOVA_04106at 444.719 kb on + strand, within BACOVA_04106at 444.729 kb on + strand, within BACOVA_04106at 444.775 kb on - strand, within BACOVA_04106at 444.789 kb on + strand, within BACOVA_04106at 444.790 kb on - strand, within BACOVA_04106at 444.791 kb on + strand, within BACOVA_04106at 444.792 kb on - strand, within BACOVA_04106at 444.792 kb on - strand, within BACOVA_04106at 444.792 kb on - strand, within BACOVA_04106

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C)
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441,760 - BACOVA_04104 0.40 -1.1
441,763 + BACOVA_04104 0.40 -0.1
441,763 + BACOVA_04104 0.40 -1.1
441,769 - BACOVA_04104 0.40 +0.9
441,825 - BACOVA_04104 0.44 -0.3
441,828 + BACOVA_04104 0.44 -0.8
441,829 - BACOVA_04104 0.44 +0.3
441,829 - BACOVA_04104 0.44 +1.2
441,840 + BACOVA_04104 0.45 +0.6
441,844 - BACOVA_04104 0.45 +0.9
441,863 - BACOVA_04104 0.46 -0.8
441,889 - BACOVA_04104 0.48 -0.0
441,900 + BACOVA_04104 0.48 -0.5
441,912 + BACOVA_04104 0.49 -2.4
441,928 - BACOVA_04104 0.50 +0.5
441,928 - BACOVA_04104 0.50 +0.1
441,962 - BACOVA_04104 0.52 +0.4
441,974 + BACOVA_04104 0.53 +0.6
442,008 + BACOVA_04104 0.55 -0.1
442,008 + BACOVA_04104 0.55 -0.4
442,008 + BACOVA_04104 0.55 -0.3
442,008 + BACOVA_04104 0.55 +0.6
442,009 - BACOVA_04104 0.55 -0.5
442,009 - BACOVA_04104 0.55 -1.6
442,009 - BACOVA_04104 0.55 +1.2
442,015 + BACOVA_04104 0.56 +0.2
442,028 - BACOVA_04104 0.57 -0.5
442,091 - BACOVA_04104 0.61 -0.2
442,117 + BACOVA_04104 0.62 +0.1
442,122 + BACOVA_04104 0.62 -0.2
442,122 + BACOVA_04104 0.62 +0.5
442,129 - BACOVA_04104 0.63 +0.4
442,129 - BACOVA_04104 0.63 -0.9
442,176 + BACOVA_04104 0.66 -0.2
442,176 + BACOVA_04104 0.66 +0.3
442,177 - BACOVA_04104 0.66 -0.5
442,210 - BACOVA_04104 0.68 -0.0
442,245 - BACOVA_04104 0.70 -1.1
442,270 + BACOVA_04104 0.72 +2.0
442,271 - BACOVA_04104 0.72 -0.1
442,282 - BACOVA_04104 0.73 +1.6
442,321 - BACOVA_04104 0.75 +0.6
442,321 - BACOVA_04104 0.75 -1.9
442,364 - BACOVA_04104 0.78 -0.1
442,367 + BACOVA_04104 0.78 +0.8
442,367 + BACOVA_04104 0.78 -0.2
442,367 + BACOVA_04104 0.78 +0.8
442,384 - BACOVA_04104 0.79 -1.4
442,404 + BACOVA_04104 0.80 -0.7
442,404 + BACOVA_04104 0.80 -0.7
442,405 - BACOVA_04104 0.80 +0.1
442,412 + BACOVA_04104 0.81 +0.2
442,417 - BACOVA_04104 0.81 -0.3
442,432 - BACOVA_04104 0.82 -1.5
442,463 + BACOVA_04104 0.84 -0.1
442,466 + BACOVA_04104 0.84 -0.7
442,519 + BACOVA_04104 0.88 +0.6
442,553 + BACOVA_04104 0.90 -1.6
442,568 + -0.9
442,593 + +0.1
442,615 + +1.4
442,623 + -0.9
442,632 + +1.1
442,633 - +0.7
442,638 - -0.2
442,638 - +1.3
442,649 + -0.4
442,675 + -0.9
442,684 - -0.0
442,684 - +1.5
442,684 - +0.1
442,707 + -0.0
442,718 + -0.4
442,719 - +0.3
442,721 + -1.4
442,724 - +0.3
442,724 - +1.2
442,724 - +0.8
442,728 + +0.6
442,733 + -0.4
442,737 - -1.0
442,737 - +1.4
442,746 - -0.2
442,746 - -0.1
442,756 + -0.2
442,761 + +1.6
442,762 - -0.8
442,768 + -0.2
442,848 - +0.5
442,876 - BACOVA_04105 0.12 -1.0
442,879 - BACOVA_04105 0.12 -0.0
442,899 - BACOVA_04105 0.14 -1.1
443,061 + BACOVA_04105 0.30 -0.5
443,062 - BACOVA_04105 0.30 +0.0
443,066 - BACOVA_04105 0.30 -0.2
443,103 - BACOVA_04105 0.34 -0.3
443,145 - BACOVA_04105 0.37 +0.8
443,151 - BACOVA_04105 0.38 -0.7
443,184 - BACOVA_04105 0.41 -0.0
443,195 + BACOVA_04105 0.42 -2.7
443,196 - BACOVA_04105 0.42 -0.0
443,218 + BACOVA_04105 0.44 +0.3
443,225 + BACOVA_04105 0.45 +0.4
443,226 - BACOVA_04105 0.45 +0.1
443,226 - BACOVA_04105 0.45 -2.0
443,226 - BACOVA_04105 0.45 -2.3
443,228 + BACOVA_04105 0.45 +0.3
443,229 - BACOVA_04105 0.45 -1.5
443,229 - BACOVA_04105 0.45 +0.4
443,234 + BACOVA_04105 0.46 +0.4
443,234 + BACOVA_04105 0.46 -0.5
443,235 - BACOVA_04105 0.46 -1.9
443,235 - BACOVA_04105 0.46 +0.0
443,239 - BACOVA_04105 0.46 -1.1
443,244 + BACOVA_04105 0.47 -0.4
443,245 - BACOVA_04105 0.47 +0.1
443,265 + BACOVA_04105 0.49 -1.6
443,291 + BACOVA_04105 0.51 +0.8
443,315 + BACOVA_04105 0.53 -1.0
443,316 - BACOVA_04105 0.54 -1.4
443,316 - BACOVA_04105 0.54 -0.3
443,381 - BACOVA_04105 0.60 -0.1
443,405 + BACOVA_04105 0.62 -1.4
443,410 + BACOVA_04105 0.62 +1.1
443,427 + BACOVA_04105 0.64 +0.3
443,455 - BACOVA_04105 0.67 -1.1
443,471 + BACOVA_04105 0.68 +0.1
443,516 - BACOVA_04105 0.72 -1.2
443,556 - BACOVA_04105 0.76 -1.6
443,559 - BACOVA_04105 0.76 -0.7
443,563 - BACOVA_04105 0.77 +0.8
443,654 + BACOVA_04105 0.85 +0.6
443,655 - BACOVA_04105 0.85 -0.4
443,720 + -0.4
443,720 + +0.2
443,720 + -0.1
443,721 - +0.6
443,721 - +0.3
443,733 + -0.8
443,736 - -0.6
443,736 - +0.7
443,747 + +0.3
443,766 + +0.7
443,767 - +0.4
443,767 - +0.4
443,767 - +0.3
443,803 + -1.2
443,823 + +2.2
443,823 + +0.6
443,860 - +0.7
443,865 - +0.6
443,928 + +0.4
444,010 - BACOVA_04106 0.15 +0.0
444,077 + BACOVA_04106 0.20 +0.6
444,098 + BACOVA_04106 0.22 -1.4
444,099 - BACOVA_04106 0.22 -0.0
444,100 + BACOVA_04106 0.22 +0.6
444,105 + BACOVA_04106 0.22 +0.4
444,132 + BACOVA_04106 0.25 -0.1
444,148 + BACOVA_04106 0.26 +1.4
444,174 + BACOVA_04106 0.28 +1.2
444,202 - BACOVA_04106 0.30 +0.2
444,202 - BACOVA_04106 0.30 -0.9
444,202 - BACOVA_04106 0.30 -0.9
444,202 - BACOVA_04106 0.30 +0.6
444,212 + BACOVA_04106 0.31 -0.8
444,277 - BACOVA_04106 0.37 -0.8
444,277 - BACOVA_04106 0.37 -0.7
444,332 - BACOVA_04106 0.41 -0.2
444,333 + BACOVA_04106 0.41 +0.9
444,333 + BACOVA_04106 0.41 -0.9
444,334 - BACOVA_04106 0.41 +0.3
444,351 + BACOVA_04106 0.43 -0.5
444,352 - BACOVA_04106 0.43 +1.0
444,391 - BACOVA_04106 0.46 +1.3
444,393 + BACOVA_04106 0.46 -1.1
444,414 + BACOVA_04106 0.48 -0.3
444,415 - BACOVA_04106 0.48 -0.1
444,415 - BACOVA_04106 0.48 +1.2
444,415 - BACOVA_04106 0.48 +0.8
444,420 - BACOVA_04106 0.48 -0.6
444,448 - BACOVA_04106 0.51 +0.6
444,448 - BACOVA_04106 0.51 +0.4
444,494 + BACOVA_04106 0.55 -1.3
444,504 + BACOVA_04106 0.55 +0.0
444,504 + BACOVA_04106 0.55 +0.9
444,607 - BACOVA_04106 0.64 +0.8
444,630 + BACOVA_04106 0.66 -1.0
444,630 + BACOVA_04106 0.66 +0.2
444,715 + BACOVA_04106 0.73 +0.1
444,719 + BACOVA_04106 0.73 -0.2
444,729 + BACOVA_04106 0.74 +0.8
444,775 - BACOVA_04106 0.78 -1.1
444,789 + BACOVA_04106 0.79 -0.2
444,790 - BACOVA_04106 0.79 -0.4
444,791 + BACOVA_04106 0.79 -3.0
444,792 - BACOVA_04106 0.79 -0.2
444,792 - BACOVA_04106 0.79 -0.2
444,792 - BACOVA_04106 0.79 +1.2

Or see this region's nucleotide sequence