Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00784

Experiment: pectate 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00782 and BACOVA_00783 are separated by 118 nucleotidesBACOVA_00783 and BACOVA_00784 are separated by 97 nucleotidesBACOVA_00784 and BACOVA_00785 are separated by 176 nucleotides BACOVA_00782: BACOVA_00782 - transporter, major facilitator family protein, at 466,078 to 467,331 _00782 BACOVA_00783: BACOVA_00783 - hypothetical protein, at 467,450 to 467,686 _00783 BACOVA_00784: BACOVA_00784 - Sigma-70 region 2, at 467,784 to 468,335 _00784 BACOVA_00785: BACOVA_00785 - hypothetical protein, at 468,512 to 471,631 _00785 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.849 kb on - strand, within BACOVA_00782at 466.849 kb on - strand, within BACOVA_00782at 466.874 kb on + strand, within BACOVA_00782at 466.878 kb on + strand, within BACOVA_00782at 466.879 kb on - strand, within BACOVA_00782at 466.885 kb on - strand, within BACOVA_00782at 466.885 kb on - strand, within BACOVA_00782at 466.915 kb on + strand, within BACOVA_00782at 466.915 kb on + strand, within BACOVA_00782at 466.915 kb on + strand, within BACOVA_00782at 466.922 kb on - strand, within BACOVA_00782at 467.055 kb on + strand, within BACOVA_00782at 467.056 kb on - strand, within BACOVA_00782at 467.098 kb on + strand, within BACOVA_00782at 467.146 kb on - strand, within BACOVA_00782at 467.146 kb on - strand, within BACOVA_00782at 467.146 kb on - strand, within BACOVA_00782at 467.172 kb on - strand, within BACOVA_00782at 467.238 kb on + strandat 467.239 kb on - strandat 467.239 kb on - strandat 467.253 kb on - strandat 467.254 kb on + strandat 467.265 kb on + strandat 467.266 kb on - strandat 467.266 kb on - strandat 467.270 kb on + strandat 467.271 kb on - strandat 467.271 kb on - strandat 467.274 kb on - strandat 467.320 kb on - strandat 467.364 kb on + strandat 467.365 kb on - strandat 467.410 kb on + strandat 467.419 kb on + strandat 467.420 kb on - strandat 467.428 kb on + strandat 467.440 kb on - strandat 467.443 kb on - strandat 467.443 kb on - strandat 467.477 kb on - strand, within BACOVA_00783at 467.477 kb on - strand, within BACOVA_00783at 467.485 kb on + strand, within BACOVA_00783at 467.491 kb on + strand, within BACOVA_00783at 467.492 kb on - strand, within BACOVA_00783at 467.492 kb on - strand, within BACOVA_00783at 467.516 kb on + strand, within BACOVA_00783at 467.556 kb on - strand, within BACOVA_00783at 467.556 kb on - strand, within BACOVA_00783at 467.556 kb on - strand, within BACOVA_00783at 467.563 kb on + strand, within BACOVA_00783at 467.640 kb on - strand, within BACOVA_00783at 467.652 kb on + strand, within BACOVA_00783at 467.652 kb on + strand, within BACOVA_00783at 467.701 kb on + strandat 467.701 kb on + strandat 467.702 kb on - strandat 467.702 kb on - strandat 467.723 kb on + strandat 467.727 kb on + strandat 467.751 kb on + strandat 467.751 kb on + strandat 467.751 kb on + strandat 467.751 kb on + strandat 467.752 kb on - strandat 467.752 kb on - strandat 467.752 kb on - strandat 467.755 kb on + strandat 467.846 kb on - strand, within BACOVA_00784at 467.846 kb on - strand, within BACOVA_00784at 467.852 kb on + strand, within BACOVA_00784at 467.853 kb on - strand, within BACOVA_00784at 467.859 kb on - strand, within BACOVA_00784at 467.870 kb on + strand, within BACOVA_00784at 467.892 kb on + strand, within BACOVA_00784at 467.893 kb on - strand, within BACOVA_00784at 467.895 kb on - strand, within BACOVA_00784at 467.900 kb on - strand, within BACOVA_00784at 467.901 kb on + strand, within BACOVA_00784at 467.901 kb on + strand, within BACOVA_00784at 467.901 kb on + strand, within BACOVA_00784at 467.907 kb on - strand, within BACOVA_00784at 467.932 kb on - strand, within BACOVA_00784at 467.992 kb on + strand, within BACOVA_00784at 467.993 kb on - strand, within BACOVA_00784at 468.003 kb on + strand, within BACOVA_00784at 468.004 kb on - strand, within BACOVA_00784at 468.011 kb on + strand, within BACOVA_00784at 468.021 kb on + strand, within BACOVA_00784at 468.027 kb on - strand, within BACOVA_00784at 468.053 kb on + strand, within BACOVA_00784at 468.055 kb on + strand, within BACOVA_00784at 468.055 kb on + strand, within BACOVA_00784at 468.056 kb on - strand, within BACOVA_00784at 468.059 kb on + strand, within BACOVA_00784at 468.059 kb on + strand, within BACOVA_00784at 468.060 kb on - strand, within BACOVA_00784at 468.060 kb on - strand, within BACOVA_00784at 468.060 kb on - strand, within BACOVA_00784at 468.109 kb on + strand, within BACOVA_00784at 468.135 kb on + strand, within BACOVA_00784at 468.200 kb on + strand, within BACOVA_00784at 468.251 kb on + strand, within BACOVA_00784at 468.254 kb on - strand, within BACOVA_00784at 468.320 kb on + strandat 468.335 kb on + strandat 468.335 kb on + strandat 468.335 kb on + strandat 468.336 kb on - strandat 468.436 kb on + strandat 468.488 kb on + strandat 468.514 kb on - strandat 468.515 kb on + strandat 468.521 kb on - strandat 468.535 kb on + strandat 468.635 kb on + strandat 468.636 kb on - strandat 468.638 kb on + strandat 468.740 kb on - strandat 468.787 kb on + strandat 468.788 kb on - strandat 468.916 kb on + strand, within BACOVA_00785at 468.916 kb on + strand, within BACOVA_00785at 468.917 kb on - strand, within BACOVA_00785at 468.917 kb on - strand, within BACOVA_00785at 468.918 kb on + strand, within BACOVA_00785at 468.919 kb on - strand, within BACOVA_00785at 468.919 kb on - strand, within BACOVA_00785at 468.919 kb on - strand, within BACOVA_00785at 468.979 kb on + strand, within BACOVA_00785at 469.019 kb on - strand, within BACOVA_00785at 469.021 kb on - strand, within BACOVA_00785at 469.030 kb on - strand, within BACOVA_00785at 469.043 kb on - strand, within BACOVA_00785at 469.046 kb on - strand, within BACOVA_00785at 469.046 kb on - strand, within BACOVA_00785at 469.109 kb on + strand, within BACOVA_00785at 469.110 kb on - strand, within BACOVA_00785at 469.110 kb on - strand, within BACOVA_00785at 469.110 kb on - strand, within BACOVA_00785at 469.110 kb on - strand, within BACOVA_00785at 469.116 kb on - strand, within BACOVA_00785at 469.176 kb on - strand, within BACOVA_00785at 469.264 kb on - strand, within BACOVA_00785at 469.264 kb on - strand, within BACOVA_00785at 469.264 kb on - strand, within BACOVA_00785at 469.297 kb on + strand, within BACOVA_00785at 469.298 kb on - strand, within BACOVA_00785at 469.305 kb on + strand, within BACOVA_00785at 469.306 kb on - strand, within BACOVA_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C)
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466,849 - BACOVA_00782 0.61 +0.8
466,849 - BACOVA_00782 0.61 +0.4
466,874 + BACOVA_00782 0.63 +1.3
466,878 + BACOVA_00782 0.64 +0.2
466,879 - BACOVA_00782 0.64 +0.4
466,885 - BACOVA_00782 0.64 +1.6
466,885 - BACOVA_00782 0.64 +0.5
466,915 + BACOVA_00782 0.67 -0.5
466,915 + BACOVA_00782 0.67 +1.4
466,915 + BACOVA_00782 0.67 -0.1
466,922 - BACOVA_00782 0.67 +0.6
467,055 + BACOVA_00782 0.78 -0.1
467,056 - BACOVA_00782 0.78 -0.9
467,098 + BACOVA_00782 0.81 +0.6
467,146 - BACOVA_00782 0.85 +0.5
467,146 - BACOVA_00782 0.85 -0.5
467,146 - BACOVA_00782 0.85 -0.6
467,172 - BACOVA_00782 0.87 +0.2
467,238 + +1.6
467,239 - +0.8
467,239 - +0.2
467,253 - -0.2
467,254 + +0.0
467,265 + +1.6
467,266 - +0.4
467,266 - -0.7
467,270 + +0.3
467,271 - -0.3
467,271 - +1.2
467,274 - +1.0
467,320 - +0.0
467,364 + -0.1
467,365 - -2.7
467,410 + +0.3
467,419 + -0.7
467,420 - -0.1
467,428 + -1.6
467,440 - +0.7
467,443 - +0.5
467,443 - +1.2
467,477 - BACOVA_00783 0.11 +2.2
467,477 - BACOVA_00783 0.11 -1.0
467,485 + BACOVA_00783 0.15 +0.6
467,491 + BACOVA_00783 0.17 +0.3
467,492 - BACOVA_00783 0.18 +0.6
467,492 - BACOVA_00783 0.18 +1.7
467,516 + BACOVA_00783 0.28 +0.4
467,556 - BACOVA_00783 0.45 +1.0
467,556 - BACOVA_00783 0.45 +0.6
467,556 - BACOVA_00783 0.45 -0.0
467,563 + BACOVA_00783 0.48 +0.2
467,640 - BACOVA_00783 0.80 +0.6
467,652 + BACOVA_00783 0.85 +0.2
467,652 + BACOVA_00783 0.85 -0.1
467,701 + -0.5
467,701 + -0.3
467,702 - +0.7
467,702 - +0.8
467,723 + -1.8
467,727 + -0.7
467,751 + +0.4
467,751 + -2.7
467,751 + +0.2
467,751 + -0.2
467,752 - +0.5
467,752 - -1.1
467,752 - -1.1
467,755 + +0.1
467,846 - BACOVA_00784 0.11 +0.2
467,846 - BACOVA_00784 0.11 -0.8
467,852 + BACOVA_00784 0.12 +0.1
467,853 - BACOVA_00784 0.12 -1.8
467,859 - BACOVA_00784 0.14 +1.0
467,870 + BACOVA_00784 0.16 +0.1
467,892 + BACOVA_00784 0.20 +1.3
467,893 - BACOVA_00784 0.20 -0.4
467,895 - BACOVA_00784 0.20 -0.3
467,900 - BACOVA_00784 0.21 +0.0
467,901 + BACOVA_00784 0.21 +0.6
467,901 + BACOVA_00784 0.21 -0.4
467,901 + BACOVA_00784 0.21 -0.1
467,907 - BACOVA_00784 0.22 -1.3
467,932 - BACOVA_00784 0.27 +0.5
467,992 + BACOVA_00784 0.38 +0.3
467,993 - BACOVA_00784 0.38 -0.1
468,003 + BACOVA_00784 0.40 -1.2
468,004 - BACOVA_00784 0.40 -0.4
468,011 + BACOVA_00784 0.41 -1.3
468,021 + BACOVA_00784 0.43 -0.3
468,027 - BACOVA_00784 0.44 +0.7
468,053 + BACOVA_00784 0.49 -1.4
468,055 + BACOVA_00784 0.49 -0.3
468,055 + BACOVA_00784 0.49 +0.2
468,056 - BACOVA_00784 0.49 +0.1
468,059 + BACOVA_00784 0.50 +0.8
468,059 + BACOVA_00784 0.50 -1.1
468,060 - BACOVA_00784 0.50 -1.4
468,060 - BACOVA_00784 0.50 +1.1
468,060 - BACOVA_00784 0.50 +1.0
468,109 + BACOVA_00784 0.59 -0.1
468,135 + BACOVA_00784 0.64 +0.4
468,200 + BACOVA_00784 0.75 -1.4
468,251 + BACOVA_00784 0.85 -0.7
468,254 - BACOVA_00784 0.85 -0.4
468,320 + +0.1
468,335 + +0.7
468,335 + +0.9
468,335 + -0.5
468,336 - -0.4
468,436 + -0.5
468,488 + +1.0
468,514 - -0.1
468,515 + -0.3
468,521 - -0.7
468,535 + -0.3
468,635 + -0.6
468,636 - -1.2
468,638 + +0.0
468,740 - -2.6
468,787 + -0.6
468,788 - +0.9
468,916 + BACOVA_00785 0.13 +0.0
468,916 + BACOVA_00785 0.13 +0.3
468,917 - BACOVA_00785 0.13 -1.3
468,917 - BACOVA_00785 0.13 -1.0
468,918 + BACOVA_00785 0.13 -0.1
468,919 - BACOVA_00785 0.13 -0.4
468,919 - BACOVA_00785 0.13 +0.2
468,919 - BACOVA_00785 0.13 +1.6
468,979 + BACOVA_00785 0.15 -0.4
469,019 - BACOVA_00785 0.16 -1.1
469,021 - BACOVA_00785 0.16 -0.0
469,030 - BACOVA_00785 0.17 -1.3
469,043 - BACOVA_00785 0.17 -0.6
469,046 - BACOVA_00785 0.17 -0.9
469,046 - BACOVA_00785 0.17 +0.2
469,109 + BACOVA_00785 0.19 -1.2
469,110 - BACOVA_00785 0.19 -0.1
469,110 - BACOVA_00785 0.19 +0.0
469,110 - BACOVA_00785 0.19 +0.4
469,110 - BACOVA_00785 0.19 +1.6
469,116 - BACOVA_00785 0.19 -0.9
469,176 - BACOVA_00785 0.21 -0.2
469,264 - BACOVA_00785 0.24 +1.0
469,264 - BACOVA_00785 0.24 -1.0
469,264 - BACOVA_00785 0.24 -0.1
469,297 + BACOVA_00785 0.25 -1.3
469,298 - BACOVA_00785 0.25 -0.4
469,305 + BACOVA_00785 0.25 +0.4
469,306 - BACOVA_00785 0.25 -0.4

Or see this region's nucleotide sequence