Strain Fitness in Escherichia fergusonii Becca around EFB2_04858

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
5,108,931	-				-1.8
5,108,944	-				-1.0
5,108,944	-				+0.6
5,108,944	-				-1.0
5,108,944	-				-2.8
5,108,944	-				+1.7
5,108,944	-				-0.5
5,108,944	-				+0.4
5,108,944	-				-3.7
5,108,944	-				+1.3
5,108,944	-				-0.5
5,108,944	-				+1.6
5,108,944	-				+0.1
5,108,944	-				-0.5
5,108,944	-				-1.6
5,108,944	-				-1.7
5,108,944	-				+0.4
5,108,959	-				+0.3
5,108,959	-				-1.5
5,109,029	-				+1.5
5,109,029	-				+0.1
5,109,029	-				-3.8
5,109,029	-				-0.6
5,109,092	-				-1.7
5,109,092	-				-0.3
5,109,092	-				-0.6
5,109,092	-				-1.5
5,109,092	-				+0.4
5,109,092	-				+1.8
5,109,092	-				-3.3
5,109,092	-				-0.2
5,109,097	-				+0.5
5,109,097	-				-0.6
5,109,097	-				+1.3
5,109,119	-				-1.3
5,109,134	-				+0.3
5,109,134	-				+0.7
5,109,134	-				-0.6
5,109,134	-				-0.9
5,109,134	-				-1.6
5,109,134	-				-1.0
5,109,137	-				-1.9
5,109,137	-				+0.5
5,109,137	-				-0.5
5,109,137	-				+1.4
5,109,137	-				+1.0
5,109,137	-				+0.2
5,109,137	-				+0.2
5,109,137	-				+0.2
5,109,142	-				+0.9
5,109,142	-				+1.2
5,109,142	-				+0.8
5,109,142	-				+1.4
5,109,142	-				+0.6
5,109,142	-				-0.6
5,109,142	-				-0.1
5,109,142	-				-1.5
5,109,142	-				+1.3
5,109,142	-				+1.1
5,109,142	-				+1.7
5,109,142	-				-0.2
5,109,142	-				+0.8
5,109,142	-				+1.0
5,109,142	-				+0.4
5,109,142	-				+0.3
5,109,148	-				+0.4
5,109,148	-				-1.4
5,109,148	-				-3.2
5,109,151	-				-0.4
5,109,151	-				-0.2
5,109,151	-				-0.4
5,109,163	+				-1.6
5,109,164	+				-1.3
5,109,164	+				-0.9
5,109,164	+				-2.4
5,109,164	+				-1.2
5,109,164	+				-1.4
5,109,164	+				-0.4
5,109,165	-				-1.3
5,109,165	-				+0.2
5,109,165	-				-0.1
5,109,165	-				+0.2
5,109,165	-				-0.0
5,109,165	-				-0.7
5,109,165	-				+1.1
5,109,165	-				+0.8
5,109,165	-				+1.0
5,109,169	+				-3.3
5,109,169	+				+0.4
5,109,169	+				+0.0
5,109,169	+				+0.5
5,109,169	+				+0.3
5,109,169	+				+0.7
5,109,169	+				-0.3
5,109,169	+				+2.4
5,109,170	-				-0.2
5,109,170	-				+1.1
5,109,170	-				-0.8
5,109,170	-				+1.8
5,109,170	-				-2.8
5,109,170	-				-1.6
5,109,170	-				+0.4
5,109,232	-				-0.0
5,109,241	+				+1.3
5,109,257	+				-1.6
5,109,271	+		EFB2_04857	0.12	-0.3
5,109,271	+		EFB2_04857	0.12	+0.0
5,109,272	-		EFB2_04857	0.13	-3.5
5,109,334	+		EFB2_04857	0.32	-1.0
5,109,348	+		EFB2_04857	0.36	-2.0
5,109,348	+		EFB2_04857	0.36	-1.5
5,109,348	+		EFB2_04857	0.36	-3.4
5,109,348	+		EFB2_04857	0.36	-1.0
5,109,349	-		EFB2_04857	0.36	-1.3
5,109,349	-		EFB2_04857	0.36	-2.4
5,109,411	+		EFB2_04857	0.55	-2.6
5,109,411	+		EFB2_04857	0.55	-0.3
5,109,412	-		EFB2_04857	0.55	-0.3
5,109,509	+		EFB2_04857	0.85	-0.6
5,109,509	+		EFB2_04857	0.85	-1.0
5,109,509	+		EFB2_04857	0.85	-1.7
5,109,509	+		EFB2_04857	0.85	-1.0
5,109,509	+		EFB2_04857	0.85	-0.6
5,109,509	+		EFB2_04857	0.85	-1.2
5,109,509	+		EFB2_04857	0.85	-2.5
5,109,509	+		EFB2_04857	0.85	-3.2
5,109,509	+		EFB2_04857	0.85	-2.8
5,109,510	-		EFB2_04857	0.85	-2.8
5,109,510	-		EFB2_04857	0.85	+1.1
5,109,510	-		EFB2_04857	0.85	-0.6
5,109,510	-		EFB2_04857	0.85	-1.6
5,109,510	-		EFB2_04857	0.85	-2.3
5,109,544	+				-3.6
5,109,545	-				+0.2
5,109,559	+				+0.8
5,109,559	+				-2.6
5,109,559	+				-1.4
5,109,559	+				-2.0
5,109,559	+				-3.0
5,109,559	+				-2.2
5,109,559	+				-1.2
5,109,559	+				-2.9
5,109,559	+				-2.7
5,109,559	+				-1.0
5,109,559	+				+1.0
5,109,559	+				-0.8
5,109,559	+				-3.2
5,109,559	+				-0.6
5,109,559	+				-0.8
5,109,559	+				-3.8
5,109,559	+				-1.6
5,109,559	+				-2.4
5,109,559	+				-1.7
5,109,559	+				-0.6
5,109,559	+				+1.0
5,109,559	+				-0.3
5,109,559	+				-1.8
5,109,559	+				+0.4
5,109,559	+				-0.3
5,109,560	-				-0.9
5,109,560	-				-3.4
5,109,560	-				-2.3
5,109,560	-				-2.0
5,109,560	-				-2.1
5,109,560	-				-1.3
5,109,560	-				-2.0
5,109,560	-				-0.3
5,109,560	-				-1.3
5,109,560	-				-2.9
5,109,560	-				-2.5
5,109,560	-				-3.5
5,109,560	-				+0.1
5,109,560	-				-3.2
5,109,560	-				-4.2
5,109,560	-				-2.6
5,109,560	-				-2.5
5,109,561	+				-2.8
5,109,561	+				-2.1
5,109,561	+				-3.1
5,109,561	+				-1.3
5,109,561	+				-1.3
5,109,561	+				-1.4
5,109,561	+				-1.7
5,109,561	+				-2.9
5,109,561	+				-2.9
5,109,561	+				-3.0
5,109,561	+				-1.8
5,109,561	+				-1.3
5,109,561	+				-0.9
5,109,561	+				-1.7
5,109,561	+				-0.9
5,109,561	+				-1.8
5,109,561	+				-3.1
5,109,561	+				+2.0
5,109,561	+				-2.1
5,109,561	+				-2.0
5,109,561	+				+1.0
5,109,561	+				-2.3
5,109,561	+				-2.2
5,109,561	+				-2.2
5,109,561	+				-2.2
5,109,561	+				-2.9
5,109,561	+				+0.0
5,109,561	+				-2.7
5,109,561	+				-3.3
5,109,561	+				-0.1
5,109,561	+				-1.9
5,109,561	+				-2.1
5,109,561	+				-0.1
5,109,561	+				-3.3
5,109,561	+				+0.4
5,109,561	+				-2.6
5,109,561	+				-3.5
5,109,561	+				-3.8
5,109,561	+				-1.2
5,109,561	+				-0.3
5,109,562	-				-2.4
5,109,562	-				-4.2
5,109,562	-				-3.2
5,109,562	-				-1.6
5,109,562	-				-2.3
5,109,562	-				-2.4
5,109,562	-				-2.2
5,109,562	-				-1.3
5,109,562	-				-0.6
5,109,562	-				-1.5
5,109,562	-				-1.9
5,109,562	-				-2.3
5,109,562	-				-1.2
5,109,562	-				-0.8
5,109,562	-				-1.2
5,109,562	-				-2.1
5,109,562	-				-2.1
5,109,562	-				-3.2
5,109,562	-				-1.3
5,109,562	-				-0.3
5,109,562	-				-0.0
5,109,562	-				-2.5
5,109,562	-				-2.3
5,109,562	-				-0.5
5,109,562	-				-2.2
5,109,562	-				-3.0
5,109,562	-				-0.8
5,109,562	-				-1.9
5,109,562	-				-3.0
5,109,562	-				+0.4
5,109,562	-				+0.1
5,109,562	-				-1.1
5,109,562	-				-0.8
5,109,562	-				-3.5
5,109,562	-				-2.4
5,109,562	-				-2.8
5,109,562	-				-0.5
5,109,562	-				-1.2
5,109,562	-				-0.1
5,109,562	-				-0.9
5,109,562	-				-0.7
5,109,562	-				-1.0
5,109,562	-				-0.3
5,109,562	-				-2.3
5,109,563	+				-4.1
5,109,563	+				-2.0
5,109,563	+				-2.2
5,109,563	+				-3.2
5,109,563	+				+0.4
5,109,563	+				-1.7
5,109,563	+				+0.0
5,109,563	+				-3.2
5,109,563	+				-1.2
5,109,563	+				-1.3
5,109,563	+				-0.3
5,109,563	+				-1.2
5,109,563	+				-2.3
5,109,563	+				-2.2
5,109,563	+				-0.8
5,109,563	+				-3.2
5,109,563	+				-1.8
5,109,563	+				-2.0
5,109,563	+				-2.4
5,109,563	+				-0.6
5,109,564	-				-1.1
5,109,564	-				-1.2
5,109,564	-				-2.8
5,109,564	-				-2.1
5,109,564	-				-0.1
5,109,564	-				-2.4
5,109,564	-				-2.8
5,109,564	-				+0.7
5,109,564	-				-0.8
5,109,564	-				-2.8
5,109,564	-				-3.0
5,109,564	-				+1.6
5,109,564	-				+0.5
5,109,564	-				-2.1
5,109,564	-				-0.8
5,109,564	-				-0.9
5,109,564	-				-0.6
5,109,564	-				-2.7
5,109,577	+				-1.9
5,109,577	+				-2.4
5,109,577	+				-1.3
5,109,578	-				+0.1
5,109,578	-				+1.6
5,109,578	-				+1.0
5,109,578	-				+0.3
5,109,578	-				-1.4
5,109,578	-				-0.5
5,109,578	-				+0.6
5,109,608	+				-0.6
5,109,609	-				-0.8
5,109,609	-				-0.2
5,109,609	-				-0.5
5,109,614	+				-1.8
5,109,622	+				-1.0
5,109,622	+				-1.9
5,109,622	+				-2.9
5,109,622	+				+0.4
5,109,623	-				-0.3
5,109,623	-				-0.1
5,109,623	-				+0.6
5,109,623	-				-0.7
5,109,623	-				-3.6
5,109,623	-				-0.2
5,109,623	-				+0.5
5,109,635	+				-2.6
5,109,635	+				+0.1
5,109,635	+				+0.1
5,109,636	-				-1.2
5,109,648	-				-2.3
5,109,657	+				-1.6
5,109,658	-				+0.4
5,109,665	+				+0.1
5,109,665	+				-2.1
5,109,665	+				+1.0
5,109,665	+				-0.2
5,109,665	+				+0.3
5,109,665	+				+0.3
5,109,665	+				+0.1
5,109,665	+				+2.0
5,109,665	+				-0.9
5,109,665	+				-1.8
5,109,665	+				+0.0
5,109,666	-				-2.3
5,109,666	-				+0.5
5,109,666	-				-0.2
5,109,666	-				+0.5
5,109,666	-				-0.7
5,109,666	-				+3.2
5,109,666	-				-0.4
5,109,666	-				-0.4
5,109,666	-				-2.7
5,109,668	+				-1.0
5,109,668	+				+0.5
5,109,668	+				-1.5
5,109,668	+				+0.2
5,109,668	+				-1.9
5,109,668	+				+0.6
5,109,668	+				+0.6
5,109,668	+				+0.4
5,109,668	+				-0.6
5,109,669	-				+0.8
5,109,669	-				+0.6
5,109,669	-				-2.0
5,109,669	-				-1.1
5,109,676	+				+1.0
5,109,676	+				+0.1
5,109,677	-				+1.0
5,109,677	-				+0.6
5,109,677	-				+0.7
5,109,677	-				+0.3
5,109,682	-				+1.0
5,109,682	-				+0.4
5,109,682	-				+1.2
5,109,689	+				+0.3
5,109,689	+				+0.6
5,109,689	+				+1.8
5,109,689	+				-2.6
5,109,689	+				-0.2
5,109,689	+				+0.4
5,109,689	+				+0.9
5,109,689	+				-2.5
5,109,689	+				+0.3
5,109,690	-				-0.4
5,109,690	-				-1.3
5,109,690	-				-0.8
5,109,690	-				+0.5
5,109,690	-				+0.1
5,109,690	-				+0.6
5,109,690	-				+1.8
5,109,690	-				+0.1
5,109,690	-				+1.2
5,109,706	+				-0.8
5,109,706	+				-0.4
5,109,707	-				-0.0
5,109,707	-				+0.7
5,109,707	-				-3.1
5,109,752	-				-2.2
5,109,785	+				-1.4
5,109,785	+				+0.7
5,109,785	+				+0.9
5,109,785	+				+1.4
5,109,786	-				+1.1
5,109,835	+		EFB2_04858	0.11	-0.2
5,109,835	+		EFB2_04858	0.11	+0.8
5,109,836	-		EFB2_04858	0.12	-3.4
5,109,881	+		EFB2_04858	0.15	-0.1
5,109,881	+		EFB2_04858	0.15	+1.2
5,109,881	+		EFB2_04858	0.15	-1.7
5,109,881	+		EFB2_04858	0.15	-2.7
5,109,881	+		EFB2_04858	0.15	-0.1
5,109,882	-		EFB2_04858	0.15	-1.2
5,109,882	-		EFB2_04858	0.15	+1.3
5,109,882	-		EFB2_04858	0.15	+0.3
5,109,882	-		EFB2_04858	0.15	-0.7
5,109,882	-		EFB2_04858	0.15	-1.0
5,109,882	-		EFB2_04858	0.15	-2.7
5,109,882	-		EFB2_04858	0.15	+1.3
5,109,897	+		EFB2_04858	0.16	+0.5
5,109,897	+		EFB2_04858	0.16	+1.0
5,109,897	+		EFB2_04858	0.16	-0.4
5,109,898	-		EFB2_04858	0.16	-1.0
5,109,898	-		EFB2_04858	0.16	+0.3
5,109,952	+		EFB2_04858	0.21	-0.2
5,109,952	+		EFB2_04858	0.21	-0.4
5,109,952	+		EFB2_04858	0.21	+0.2
5,109,952	+		EFB2_04858	0.21	-0.7
5,109,952	+		EFB2_04858	0.21	-1.6
5,109,953	-		EFB2_04858	0.21	+0.4
5,109,953	-		EFB2_04858	0.21	+0.2
5,109,953	-		EFB2_04858	0.21	+0.8
5,109,953	-		EFB2_04858	0.21	-0.1
5,109,953	-		EFB2_04858	0.21	+0.6
5,109,953	-		EFB2_04858	0.21	-0.5
5,109,953	-		EFB2_04858	0.21	-0.5
5,109,956	+		EFB2_04858	0.21	-0.7
5,109,956	+		EFB2_04858	0.21	+0.5
5,109,956	+		EFB2_04858	0.21	-0.3
5,109,957	-		EFB2_04858	0.21	-1.0
5,109,957	-		EFB2_04858	0.21	+0.8
5,109,957	-		EFB2_04858	0.21	+0.2
5,109,957	-		EFB2_04858	0.21	+1.1
5,110,019	+		EFB2_04858	0.26	+0.3
5,110,019	+		EFB2_04858	0.26	+1.2
5,110,019	+		EFB2_04858	0.26	+0.0
5,110,019	+		EFB2_04858	0.26	+0.6
5,110,019	+		EFB2_04858	0.26	+0.8
5,110,020	-		EFB2_04858	0.26	-0.3
5,110,044	+		EFB2_04858	0.28	-2.3
5,110,044	+		EFB2_04858	0.28	+0.8
5,110,044	+		EFB2_04858	0.28	+1.5
5,110,044	+		EFB2_04858	0.28	+0.6
5,110,044	+		EFB2_04858	0.28	-1.0
5,110,045	-		EFB2_04858	0.28	+0.1
5,110,045	-		EFB2_04858	0.28	-0.5
5,110,045	-		EFB2_04858	0.28	-1.0
5,110,045	-		EFB2_04858	0.28	-0.9
5,110,060	-		EFB2_04858	0.29	+1.2
5,110,123	+		EFB2_04858	0.34	+0.6
5,110,123	+		EFB2_04858	0.34	-2.2
5,110,123	+		EFB2_04858	0.34	+0.0
5,110,124	-		EFB2_04858	0.34	+0.6
5,110,124	-		EFB2_04858	0.34	-1.8
5,110,124	-		EFB2_04858	0.34	-0.1
5,110,124	-		EFB2_04858	0.34	+0.5
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