Strain Fitness in Escherichia fergusonii Becca around EFB2_04743

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,989,478	-		EFB2_04742	0.29	-1.1
4,989,486	+		EFB2_04742	0.30	+0.9
4,989,486	+		EFB2_04742	0.30	-0.2
4,989,487	-		EFB2_04742	0.30	-2.7
4,989,494	+		EFB2_04742	0.30	+1.1
4,989,494	+		EFB2_04742	0.30	-0.8
4,989,494	+		EFB2_04742	0.30	+1.0
4,989,495	-		EFB2_04742	0.30	+0.4
4,989,495	-		EFB2_04742	0.30	-0.8
4,989,495	-		EFB2_04742	0.30	-1.2
4,989,499	+		EFB2_04742	0.31	+0.6
4,989,499	+		EFB2_04742	0.31	+0.3
4,989,499	+		EFB2_04742	0.31	-1.3
4,989,499	+		EFB2_04742	0.31	-0.6
4,989,499	+		EFB2_04742	0.31	+0.4
4,989,499	+		EFB2_04742	0.31	+1.0
4,989,499	+		EFB2_04742	0.31	-0.5
4,989,499	+		EFB2_04742	0.31	+0.0
4,989,500	-		EFB2_04742	0.31	-1.1
4,989,500	-		EFB2_04742	0.31	-0.4
4,989,500	-		EFB2_04742	0.31	+0.7
4,989,500	-		EFB2_04742	0.31	-0.9
4,989,500	-		EFB2_04742	0.31	+1.0
4,989,500	-		EFB2_04742	0.31	-1.4
4,989,503	+		EFB2_04742	0.31	-0.1
4,989,503	+		EFB2_04742	0.31	+0.4
4,989,503	+		EFB2_04742	0.31	+0.4
4,989,503	+		EFB2_04742	0.31	-0.5
4,989,503	+		EFB2_04742	0.31	+1.0
4,989,504	-		EFB2_04742	0.31	+1.5
4,989,507	+		EFB2_04742	0.31	-0.4
4,989,528	+		EFB2_04742	0.33	-0.2
4,989,528	+		EFB2_04742	0.33	+1.3
4,989,529	-		EFB2_04742	0.33	+0.8
4,989,575	+		EFB2_04742	0.37	+0.1
4,989,576	-		EFB2_04742	0.37	-0.1
4,989,576	-		EFB2_04742	0.37	-0.3
4,989,576	-		EFB2_04742	0.37	-0.9
4,989,576	-		EFB2_04742	0.37	+0.1
4,989,583	-		EFB2_04742	0.37	+0.9
4,989,594	-		EFB2_04742	0.38	+1.0
4,989,594	-		EFB2_04742	0.38	-0.1
4,989,619	+		EFB2_04742	0.40	+0.4
4,989,619	+		EFB2_04742	0.40	+0.5
4,989,619	+		EFB2_04742	0.40	-0.2
4,989,619	+		EFB2_04742	0.40	+0.8
4,989,619	+		EFB2_04742	0.40	-0.1
4,989,619	+		EFB2_04742	0.40	+0.3
4,989,619	+		EFB2_04742	0.40	+0.2
4,989,619	+		EFB2_04742	0.40	+0.7
4,989,619	+		EFB2_04742	0.40	+0.3
4,989,619	+		EFB2_04742	0.40	+1.0
4,989,619	+		EFB2_04742	0.40	-1.1
4,989,619	+		EFB2_04742	0.40	+0.0
4,989,619	+		EFB2_04742	0.40	-3.6
4,989,620	-		EFB2_04742	0.40	-0.3
4,989,620	-		EFB2_04742	0.40	-0.1
4,989,620	-		EFB2_04742	0.40	+0.2
4,989,620	-		EFB2_04742	0.40	+0.7
4,989,620	-		EFB2_04742	0.40	+0.4
4,989,620	-		EFB2_04742	0.40	+1.5
4,989,620	-		EFB2_04742	0.40	-0.4
4,989,620	-		EFB2_04742	0.40	+1.2
4,989,620	-		EFB2_04742	0.40	+1.5
4,989,620	-		EFB2_04742	0.40	+1.2
4,989,620	-		EFB2_04742	0.40	+1.2
4,989,620	-		EFB2_04742	0.40	-0.5
4,989,623	+		EFB2_04742	0.41	-0.6
4,989,623	+		EFB2_04742	0.41	+0.2
4,989,623	+		EFB2_04742	0.41	-0.0
4,989,623	+		EFB2_04742	0.41	+0.5
4,989,623	+		EFB2_04742	0.41	-0.9
4,989,623	+		EFB2_04742	0.41	+1.7
4,989,623	+		EFB2_04742	0.41	+0.7
4,989,623	+		EFB2_04742	0.41	+0.9
4,989,623	+		EFB2_04742	0.41	+1.0
4,989,623	+		EFB2_04742	0.41	-1.0
4,989,623	+		EFB2_04742	0.41	+0.4
4,989,623	+		EFB2_04742	0.41	+0.6
4,989,623	+		EFB2_04742	0.41	-3.0
4,989,623	+		EFB2_04742	0.41	+0.4
4,989,623	+		EFB2_04742	0.41	-2.3
4,989,623	+		EFB2_04742	0.41	+0.2
4,989,623	+		EFB2_04742	0.41	+1.1
4,989,623	+		EFB2_04742	0.41	-0.8
4,989,623	+		EFB2_04742	0.41	+0.0
4,989,623	+		EFB2_04742	0.41	+0.1
4,989,623	+		EFB2_04742	0.41	-1.4
4,989,624	-		EFB2_04742	0.41	-0.5
4,989,624	-		EFB2_04742	0.41	-0.1
4,989,624	-		EFB2_04742	0.41	-0.5
4,989,624	-		EFB2_04742	0.41	+0.2
4,989,624	-		EFB2_04742	0.41	+1.2
4,989,624	-		EFB2_04742	0.41	-0.7
4,989,624	-		EFB2_04742	0.41	-2.6
4,989,624	-		EFB2_04742	0.41	-0.7
4,989,624	-		EFB2_04742	0.41	+0.0
4,989,624	-		EFB2_04742	0.41	-0.0
4,989,624	-		EFB2_04742	0.41	+0.4
4,989,624	-		EFB2_04742	0.41	-0.2
4,989,624	-		EFB2_04742	0.41	-0.4
4,989,624	-		EFB2_04742	0.41	+0.5
4,989,624	-		EFB2_04742	0.41	+0.9
4,989,624	-		EFB2_04742	0.41	-2.1
4,989,624	-		EFB2_04742	0.41	-0.0
4,989,624	-		EFB2_04742	0.41	+0.1
4,989,624	-		EFB2_04742	0.41	-0.8
4,989,624	-		EFB2_04742	0.41	+0.5
4,989,624	-		EFB2_04742	0.41	+1.3
4,989,655	+		EFB2_04742	0.43	+1.3
4,989,665	+		EFB2_04742	0.44	+0.4
4,989,665	+		EFB2_04742	0.44	-0.6
4,989,666	-		EFB2_04742	0.44	-3.4
4,989,666	-		EFB2_04742	0.44	+0.0
4,989,699	+		EFB2_04742	0.47	+1.0
4,989,699	+		EFB2_04742	0.47	-1.4
4,989,735	+		EFB2_04742	0.50	+2.5
4,989,735	+		EFB2_04742	0.50	+0.3
4,989,735	+		EFB2_04742	0.50	+1.2
4,989,735	+		EFB2_04742	0.50	+0.2
4,989,735	+		EFB2_04742	0.50	-0.9
4,989,735	+		EFB2_04742	0.50	+0.2
4,989,735	+		EFB2_04742	0.50	-2.4
4,989,735	+		EFB2_04742	0.50	-1.5
4,989,735	+		EFB2_04742	0.50	-0.1
4,989,735	+		EFB2_04742	0.50	+0.2
4,989,736	-		EFB2_04742	0.50	-1.2
4,989,736	-		EFB2_04742	0.50	+0.4
4,989,736	-		EFB2_04742	0.50	-0.7
4,989,736	-		EFB2_04742	0.50	+0.9
4,989,736	-		EFB2_04742	0.50	-0.5
4,989,736	-		EFB2_04742	0.50	+0.3
4,989,819	+		EFB2_04742	0.56	+0.7
4,989,848	+		EFB2_04742	0.59	+0.7
4,989,848	+		EFB2_04742	0.59	-1.1
4,989,848	+		EFB2_04742	0.59	-0.1
4,989,848	+		EFB2_04742	0.59	-2.6
4,989,848	+		EFB2_04742	0.59	-0.3
4,989,848	+		EFB2_04742	0.59	+1.0
4,989,848	+		EFB2_04742	0.59	+0.4
4,989,849	-		EFB2_04742	0.59	-0.3
4,989,849	-		EFB2_04742	0.59	-1.9
4,989,849	-		EFB2_04742	0.59	-0.2
4,989,849	-		EFB2_04742	0.59	-0.1
4,989,849	-		EFB2_04742	0.59	+0.2
4,989,849	-		EFB2_04742	0.59	-0.1
4,989,867	+		EFB2_04742	0.60	+0.5
4,989,867	+		EFB2_04742	0.60	+0.0
4,989,867	+		EFB2_04742	0.60	-1.1
4,989,868	-		EFB2_04742	0.60	-2.4
4,989,868	-		EFB2_04742	0.60	+0.7
4,989,868	-		EFB2_04742	0.60	+0.5
4,989,868	-		EFB2_04742	0.60	+0.4
4,989,868	-		EFB2_04742	0.60	-2.4
4,989,877	+		EFB2_04742	0.61	-3.2
4,989,878	-		EFB2_04742	0.61	+0.3
4,989,897	+		EFB2_04742	0.62	-1.6
4,989,897	+		EFB2_04742	0.62	+0.4
4,989,897	+		EFB2_04742	0.62	+0.1
4,989,897	+		EFB2_04742	0.62	+0.8
4,989,898	-		EFB2_04742	0.63	-0.3
4,989,898	-		EFB2_04742	0.63	+0.8
4,989,898	-		EFB2_04742	0.63	-0.8
4,989,898	-		EFB2_04742	0.63	+0.4
4,989,898	-		EFB2_04742	0.63	+1.1
4,989,898	-		EFB2_04742	0.63	-0.5
4,989,901	+		EFB2_04742	0.63	+1.6
4,989,901	+		EFB2_04742	0.63	-1.9
4,989,901	+		EFB2_04742	0.63	+0.6
4,989,901	+		EFB2_04742	0.63	+0.9
4,989,901	+		EFB2_04742	0.63	-1.1
4,989,901	+		EFB2_04742	0.63	+1.0
4,989,902	-		EFB2_04742	0.63	+0.2
4,989,902	-		EFB2_04742	0.63	-2.8
4,989,902	-		EFB2_04742	0.63	-0.2
4,989,902	-		EFB2_04742	0.63	-0.7
4,989,902	-		EFB2_04742	0.63	+0.9
4,989,987	+		EFB2_04742	0.70	+0.7
4,990,003	+		EFB2_04742	0.71	+0.4
4,990,044	+		EFB2_04742	0.74	+0.5
4,990,045	-		EFB2_04742	0.74	+0.9
4,990,045	-		EFB2_04742	0.74	+0.1
4,990,045	-		EFB2_04742	0.74	+0.4
4,990,054	+		EFB2_04742	0.75	-1.0
4,990,055	-		EFB2_04742	0.75	-1.7
4,990,083	-		EFB2_04742	0.77	-0.8
4,990,103	+		EFB2_04742	0.79	+0.4
4,990,104	-		EFB2_04742	0.79	-2.4
4,990,104	-		EFB2_04742	0.79	-1.1
4,990,104	-		EFB2_04742	0.79	-0.1
4,990,104	-		EFB2_04742	0.79	-1.7
4,990,114	+		EFB2_04742	0.80	+0.9
4,990,115	-		EFB2_04742	0.80	+1.0
4,990,148	+		EFB2_04742	0.82	-0.3
4,990,148	+		EFB2_04742	0.82	+1.2
4,990,148	+		EFB2_04742	0.82	-0.1
4,990,148	+		EFB2_04742	0.82	+1.0
4,990,148	+		EFB2_04742	0.82	+2.1
4,990,149	-		EFB2_04742	0.82	-0.7
4,990,149	-		EFB2_04742	0.82	+1.5
4,990,149	-		EFB2_04742	0.82	+0.3
4,990,224	+		EFB2_04742	0.88	+1.3
4,990,224	+		EFB2_04742	0.88	+1.6
4,990,224	+		EFB2_04742	0.88	-3.7
4,990,225	-		EFB2_04742	0.89	-2.6
4,990,225	-		EFB2_04742	0.89	-0.6
4,990,278	-				+0.4
4,990,278	-				-2.9
4,990,301	-				-2.9
4,990,331	-				-3.5
4,990,331	-				-0.0
4,990,333	+				-1.0
4,990,334	-				+1.4
4,990,334	-				-0.1
4,990,334	-				+1.7
4,990,369	-				-0.7
4,990,413	-				+1.1
4,990,443	+				-2.1
4,990,447	-				-1.6
4,990,461	+				-2.7
4,990,471	+				-1.8
4,990,512	+				+0.0
4,990,512	+				-2.0
4,990,515	+				+1.1
4,990,521	-				+0.4
4,990,567	-				-0.8
4,990,582	-		EFB2_04743	0.11	+1.2
4,990,672	+		EFB2_04743	0.21	-3.0
4,990,673	-		EFB2_04743	0.21	-1.8
4,990,675	+		EFB2_04743	0.21	-1.0
4,990,675	+		EFB2_04743	0.21	-0.1
4,990,675	+		EFB2_04743	0.21	+0.3
4,990,675	+		EFB2_04743	0.21	-3.1
4,990,675	+		EFB2_04743	0.21	-1.7
4,990,676	-		EFB2_04743	0.21	+1.5
4,990,676	-		EFB2_04743	0.21	-1.1
4,990,676	-		EFB2_04743	0.21	-0.2
4,990,676	-		EFB2_04743	0.21	-0.8
4,990,676	-		EFB2_04743	0.21	+0.5
4,990,699	+		EFB2_04743	0.23	+1.8
4,990,700	-		EFB2_04743	0.23	+0.2
4,990,736	+		EFB2_04743	0.27	+1.1
4,990,736	+		EFB2_04743	0.27	+0.4
4,990,736	+		EFB2_04743	0.27	-4.3
4,990,736	+		EFB2_04743	0.27	+0.3
4,990,736	+		EFB2_04743	0.27	+1.0
4,990,737	-		EFB2_04743	0.27	-1.0
4,990,737	-		EFB2_04743	0.27	-3.7
4,990,737	-		EFB2_04743	0.27	+0.0
4,990,737	-		EFB2_04743	0.27	+0.4
4,990,737	-		EFB2_04743	0.27	-0.5
4,990,747	-		EFB2_04743	0.28	+0.6
4,990,750	-		EFB2_04743	0.29	+0.8
4,990,766	+		EFB2_04743	0.30	+0.4
4,990,784	+		EFB2_04743	0.32	-0.4
4,990,793	+		EFB2_04743	0.33	+0.6
4,990,793	+		EFB2_04743	0.33	+0.3
4,990,793	+		EFB2_04743	0.33	+1.3
4,990,793	+		EFB2_04743	0.33	-1.0
4,990,793	+		EFB2_04743	0.33	-3.2
4,990,793	+		EFB2_04743	0.33	-2.7
4,990,793	+		EFB2_04743	0.33	+0.6
4,990,793	+		EFB2_04743	0.33	-2.4
4,990,794	-		EFB2_04743	0.33	+1.0
4,990,794	-		EFB2_04743	0.33	+0.2
4,990,794	-		EFB2_04743	0.33	-0.1
4,990,794	-		EFB2_04743	0.33	-0.1
4,990,794	-		EFB2_04743	0.33	-0.9
4,990,794	-		EFB2_04743	0.33	-0.8
4,990,794	-		EFB2_04743	0.33	-1.1
4,990,794	-		EFB2_04743	0.33	+0.5
4,990,794	-		EFB2_04743	0.33	+0.2
4,990,794	-		EFB2_04743	0.33	+0.8
4,990,794	-		EFB2_04743	0.33	+1.0
4,990,794	-		EFB2_04743	0.33	+0.8
4,990,794	-		EFB2_04743	0.33	+1.5
4,990,817	+		EFB2_04743	0.35	+0.1
4,990,850	+		EFB2_04743	0.39	-0.8
4,990,850	+		EFB2_04743	0.39	-2.2
4,990,850	+		EFB2_04743	0.39	-0.2
4,990,851	-		EFB2_04743	0.39	-1.2
4,990,851	-		EFB2_04743	0.39	-0.7
4,990,853	+		EFB2_04743	0.39	-0.4
4,990,854	-		EFB2_04743	0.39	-0.1
4,990,854	-		EFB2_04743	0.39	-2.6
4,990,926	+		EFB2_04743	0.46	-0.8
4,990,927	-		EFB2_04743	0.47	-2.4
4,991,007	-		EFB2_04743	0.55	+0.6
4,991,029	+		EFB2_04743	0.57	-1.6
4,991,029	+		EFB2_04743	0.57	-0.5
4,991,030	-		EFB2_04743	0.57	+2.2
4,991,030	-		EFB2_04743	0.57	+0.1
4,991,030	-		EFB2_04743	0.57	-0.5
4,991,040	+		EFB2_04743	0.58	+0.4
4,991,040	+		EFB2_04743	0.58	+1.2
4,991,041	-		EFB2_04743	0.58	-1.6
4,991,041	-		EFB2_04743	0.58	+0.4
4,991,041	-		EFB2_04743	0.58	-0.3
4,991,044	+		EFB2_04743	0.59	+0.6
4,991,044	+		EFB2_04743	0.59	-0.5
4,991,044	+		EFB2_04743	0.59	+0.9
4,991,045	-		EFB2_04743	0.59	+0.2
4,991,045	-		EFB2_04743	0.59	-0.1
4,991,045	-		EFB2_04743	0.59	+0.7
4,991,045	-		EFB2_04743	0.59	+0.2
4,991,073	+		EFB2_04743	0.61	+0.5
4,991,073	+		EFB2_04743	0.61	-0.9
4,991,073	+		EFB2_04743	0.61	+0.1
4,991,073	+		EFB2_04743	0.61	+1.1
4,991,074	-		EFB2_04743	0.62	-0.1
4,991,074	-		EFB2_04743	0.62	+0.4
4,991,074	-		EFB2_04743	0.62	-0.2
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