Strain Fitness in Escherichia fergusonii Becca around EFB2_04515

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,734,790	+				+1.5
4,734,795	+				+0.3
4,734,795	+				+0.5
4,734,795	+				+0.0
4,734,795	+				-0.5
4,734,795	+				+0.2
4,734,795	+				-0.5
4,734,795	+				-1.4
4,734,795	+				+0.2
4,734,795	+				-1.2
4,734,795	+				+0.6
4,734,795	+				-0.5
4,734,795	+				+1.3
4,734,795	+				-2.4
4,734,795	+				+2.2
4,734,795	+				+1.9
4,734,795	+				-0.7
4,734,796	-				+0.4
4,734,796	-				+0.2
4,734,796	-				-2.5
4,734,796	-				+1.4
4,734,796	-				+0.2
4,734,796	-				-2.9
4,734,796	-				-3.2
4,734,796	-				-1.6
4,734,796	-				+1.4
4,734,796	-				-1.7
4,734,796	-				-1.1
4,734,796	-				+1.1
4,734,796	-				+0.9
4,734,796	-				+0.3
4,734,796	-				+0.2
4,734,796	-				-3.3
4,734,816	+				-1.3
4,734,817	-				-0.8
4,734,817	-				-2.6
4,734,817	-				+3.1
4,734,847	+				-0.4
4,734,847	+				+0.7
4,734,847	+				-0.6
4,734,848	-				-1.3
4,734,850	+				+0.3
4,734,851	-				-0.9
4,734,914	+		EFB2_04513	0.17	-0.0
4,734,914	+		EFB2_04513	0.17	-3.4
4,734,914	+		EFB2_04513	0.17	-1.4
4,734,914	+		EFB2_04513	0.17	-0.8
4,734,915	-		EFB2_04513	0.17	+0.5
4,734,915	-		EFB2_04513	0.17	-1.9
4,734,933	+		EFB2_04513	0.20	-0.0
4,734,933	+		EFB2_04513	0.20	+1.4
4,734,933	+		EFB2_04513	0.20	-2.2
4,734,934	-		EFB2_04513	0.20	-0.4
4,734,946	+		EFB2_04513	0.22	+0.4
4,734,946	+		EFB2_04513	0.22	-0.6
4,734,947	-		EFB2_04513	0.22	-0.7
4,734,947	-		EFB2_04513	0.22	-0.9
4,735,039	+		EFB2_04513	0.38	+0.0
4,735,039	+		EFB2_04513	0.38	+2.0
4,735,039	+		EFB2_04513	0.38	-0.3
4,735,039	+		EFB2_04513	0.38	+0.2
4,735,039	+		EFB2_04513	0.38	+0.0
4,735,039	+		EFB2_04513	0.38	+0.5
4,735,039	+		EFB2_04513	0.38	+0.6
4,735,039	+		EFB2_04513	0.38	+0.5
4,735,039	+		EFB2_04513	0.38	+0.7
4,735,039	+		EFB2_04513	0.38	+2.9
4,735,039	+		EFB2_04513	0.38	+0.4
4,735,039	+		EFB2_04513	0.38	-0.1
4,735,039	+		EFB2_04513	0.38	+2.3
4,735,039	+		EFB2_04513	0.38	+1.5
4,735,039	+		EFB2_04513	0.38	-0.1
4,735,039	+		EFB2_04513	0.38	-1.3
4,735,039	+		EFB2_04513	0.38	-3.4
4,735,039	+		EFB2_04513	0.38	+1.4
4,735,039	+		EFB2_04513	0.38	-2.5
4,735,039	+		EFB2_04513	0.38	+1.0
4,735,039	+		EFB2_04513	0.38	+0.6
4,735,039	+		EFB2_04513	0.38	+2.6
4,735,039	+		EFB2_04513	0.38	+0.7
4,735,039	+		EFB2_04513	0.38	-0.1
4,735,039	+		EFB2_04513	0.38	+1.6
4,735,039	+		EFB2_04513	0.38	-0.6
4,735,039	+		EFB2_04513	0.38	+1.1
4,735,039	+		EFB2_04513	0.38	-0.3
4,735,039	+		EFB2_04513	0.38	-2.8
4,735,039	+		EFB2_04513	0.38	+0.6
4,735,039	+		EFB2_04513	0.38	-0.6
4,735,039	+		EFB2_04513	0.38	+1.9
4,735,039	+		EFB2_04513	0.38	-0.6
4,735,039	+		EFB2_04513	0.38	-0.8
4,735,039	+		EFB2_04513	0.38	+0.6
4,735,039	+		EFB2_04513	0.38	-1.5
4,735,039	+		EFB2_04513	0.38	+0.1
4,735,040	-		EFB2_04513	0.38	+0.2
4,735,040	-		EFB2_04513	0.38	+0.6
4,735,040	-		EFB2_04513	0.38	+0.6
4,735,040	-		EFB2_04513	0.38	+0.5
4,735,040	-		EFB2_04513	0.38	-1.9
4,735,040	-		EFB2_04513	0.38	-1.5
4,735,040	-		EFB2_04513	0.38	+0.9
4,735,040	-		EFB2_04513	0.38	+0.3
4,735,040	-		EFB2_04513	0.38	-0.4
4,735,040	-		EFB2_04513	0.38	-0.2
4,735,040	-		EFB2_04513	0.38	-1.6
4,735,040	-		EFB2_04513	0.38	-0.9
4,735,040	-		EFB2_04513	0.38	-0.3
4,735,040	-		EFB2_04513	0.38	+0.3
4,735,040	-		EFB2_04513	0.38	-2.4
4,735,040	-		EFB2_04513	0.38	-3.0
4,735,040	-		EFB2_04513	0.38	-0.0
4,735,040	-		EFB2_04513	0.38	+0.7
4,735,040	-		EFB2_04513	0.38	+0.7
4,735,040	-		EFB2_04513	0.38	-0.0
4,735,040	-		EFB2_04513	0.38	-0.8
4,735,040	-		EFB2_04513	0.38	+1.4
4,735,040	-		EFB2_04513	0.38	+0.5
4,735,040	-		EFB2_04513	0.38	-2.5
4,735,040	-		EFB2_04513	0.38	+1.1
4,735,040	-		EFB2_04513	0.38	+0.3
4,735,040	-		EFB2_04513	0.38	+1.2
4,735,040	-		EFB2_04513	0.38	+0.0
4,735,040	-		EFB2_04513	0.38	-1.1
4,735,040	-		EFB2_04513	0.38	-0.6
4,735,040	-		EFB2_04513	0.38	+0.7
4,735,040	-		EFB2_04513	0.38	-0.4
4,735,040	-		EFB2_04513	0.38	-0.4
4,735,056	+		EFB2_04513	0.40	-3.3
4,735,056	+		EFB2_04513	0.40	+0.9
4,735,059	+		EFB2_04513	0.41	+0.1
4,735,059	+		EFB2_04513	0.41	+0.3
4,735,059	+		EFB2_04513	0.41	+1.1
4,735,059	+		EFB2_04513	0.41	+0.1
4,735,059	+		EFB2_04513	0.41	+1.8
4,735,059	+		EFB2_04513	0.41	-3.6
4,735,059	+		EFB2_04513	0.41	+0.1
4,735,059	+		EFB2_04513	0.41	+0.6
4,735,060	-		EFB2_04513	0.41	-0.3
4,735,060	-		EFB2_04513	0.41	+0.6
4,735,083	+		EFB2_04513	0.45	-0.3
4,735,083	+		EFB2_04513	0.45	-2.3
4,735,084	-		EFB2_04513	0.45	-0.1
4,735,084	-		EFB2_04513	0.45	-3.3
4,735,106	+		EFB2_04513	0.49	+0.8
4,735,106	+		EFB2_04513	0.49	+0.4
4,735,106	+		EFB2_04513	0.49	+1.0
4,735,106	+		EFB2_04513	0.49	-2.9
4,735,107	-		EFB2_04513	0.49	-0.5
4,735,107	-		EFB2_04513	0.49	+0.8
4,735,107	-		EFB2_04513	0.49	-0.8
4,735,107	-		EFB2_04513	0.49	+0.6
4,735,107	-		EFB2_04513	0.49	+0.2
4,735,107	-		EFB2_04513	0.49	-0.3
4,735,107	-		EFB2_04513	0.49	+0.8
4,735,107	-		EFB2_04513	0.49	-0.5
4,735,107	-		EFB2_04513	0.49	-2.9
4,735,107	-		EFB2_04513	0.49	+0.6
4,735,107	-		EFB2_04513	0.49	-0.2
4,735,126	-		EFB2_04513	0.52	-1.7
4,735,164	+		EFB2_04513	0.58	-0.2
4,735,164	+		EFB2_04513	0.58	+0.1
4,735,164	+		EFB2_04513	0.58	+1.2
4,735,164	+		EFB2_04513	0.58	-0.3
4,735,164	+		EFB2_04513	0.58	-0.2
4,735,164	+		EFB2_04513	0.58	-2.6
4,735,164	+		EFB2_04513	0.58	-1.7
4,735,164	+		EFB2_04513	0.58	+0.8
4,735,164	+		EFB2_04513	0.58	-0.8
4,735,164	+		EFB2_04513	0.58	+1.3
4,735,165	-		EFB2_04513	0.59	-2.3
4,735,165	-		EFB2_04513	0.59	+0.3
4,735,165	-		EFB2_04513	0.59	-0.6
4,735,165	-		EFB2_04513	0.59	+2.4
4,735,165	-		EFB2_04513	0.59	+0.5
4,735,165	-		EFB2_04513	0.59	+0.3
4,735,165	-		EFB2_04513	0.59	-2.2
4,735,165	-		EFB2_04513	0.59	+1.7
4,735,165	-		EFB2_04513	0.59	-0.3
4,735,165	-		EFB2_04513	0.59	+0.7
4,735,165	-		EFB2_04513	0.59	+0.1
4,735,167	+		EFB2_04513	0.59	-0.2
4,735,168	-		EFB2_04513	0.59	-3.0
4,735,168	-		EFB2_04513	0.59	-0.5
4,735,168	-		EFB2_04513	0.59	-0.6
4,735,168	-		EFB2_04513	0.59	-0.5
4,735,207	+		EFB2_04513	0.66	-0.7
4,735,208	-		EFB2_04513	0.66	+0.0
4,735,208	-		EFB2_04513	0.66	-0.5
4,735,208	-		EFB2_04513	0.66	+1.0
4,735,296	+		EFB2_04513	0.81	-0.3
4,735,296	+		EFB2_04513	0.81	+2.0
4,735,296	+		EFB2_04513	0.81	-0.3
4,735,296	+		EFB2_04513	0.81	-0.3
4,735,297	-		EFB2_04513	0.81	+0.8
4,735,297	-		EFB2_04513	0.81	+0.5
4,735,297	-		EFB2_04513	0.81	+0.4
4,735,307	+		EFB2_04513	0.82	+0.3
4,735,328	+		EFB2_04513	0.86	+0.9
4,735,329	-		EFB2_04513	0.86	-1.1
4,735,336	-		EFB2_04513	0.87	+0.8
4,735,453	+		EFB2_04514	0.12	+0.9
4,735,453	+		EFB2_04514	0.12	+2.7
4,735,453	+		EFB2_04514	0.12	-3.4
4,735,453	+		EFB2_04514	0.12	-0.0
4,735,454	-		EFB2_04514	0.12	-0.8
4,735,462	+		EFB2_04514	0.14	+0.6
4,735,462	+		EFB2_04514	0.14	+0.3
4,735,462	+		EFB2_04514	0.14	-3.7
4,735,463	-		EFB2_04514	0.14	+0.3
4,735,463	-		EFB2_04514	0.14	-0.5
4,735,463	-		EFB2_04514	0.14	+1.0
4,735,498	+		EFB2_04514	0.23	+1.1
4,735,509	+		EFB2_04514	0.26	+0.1
4,735,509	+		EFB2_04514	0.26	-0.1
4,735,509	+		EFB2_04514	0.26	-0.9
4,735,509	+		EFB2_04514	0.26	-2.7
4,735,510	-		EFB2_04514	0.27	+0.8
4,735,511	+		EFB2_04514	0.27	-0.7
4,735,511	+		EFB2_04514	0.27	-0.3
4,735,511	+		EFB2_04514	0.27	-2.3
4,735,511	+		EFB2_04514	0.27	+1.0
4,735,511	+		EFB2_04514	0.27	-0.9
4,735,511	+		EFB2_04514	0.27	+1.5
4,735,511	+		EFB2_04514	0.27	+1.2
4,735,512	-		EFB2_04514	0.27	+1.3
4,735,512	-		EFB2_04514	0.27	+0.1
4,735,512	-		EFB2_04514	0.27	+1.1
4,735,512	-		EFB2_04514	0.27	-0.5
4,735,512	-		EFB2_04514	0.27	+1.3
4,735,512	-		EFB2_04514	0.27	-0.5
4,735,512	-		EFB2_04514	0.27	+1.7
4,735,512	-		EFB2_04514	0.27	+0.3
4,735,512	-		EFB2_04514	0.27	+1.2
4,735,512	-		EFB2_04514	0.27	-0.0
4,735,512	-		EFB2_04514	0.27	+0.4
4,735,512	-		EFB2_04514	0.27	-1.0
4,735,589	+		EFB2_04514	0.47	+5.7
4,735,589	+		EFB2_04514	0.47	+0.1
4,735,589	+		EFB2_04514	0.47	-0.2
4,735,589	+		EFB2_04514	0.47	+1.2
4,735,590	-		EFB2_04514	0.47	+0.3
4,735,590	-		EFB2_04514	0.47	+0.2
4,735,590	-		EFB2_04514	0.47	+0.5
4,735,590	-		EFB2_04514	0.47	-0.2
4,735,606	-		EFB2_04514	0.52	-0.7
4,735,637	-		EFB2_04514	0.60	-0.4
4,735,666	+		EFB2_04514	0.67	-2.3
4,735,666	+		EFB2_04514	0.67	+0.5
4,735,666	+		EFB2_04514	0.67	-2.2
4,735,666	+		EFB2_04514	0.67	+1.0
4,735,666	+		EFB2_04514	0.67	-1.0
4,735,666	+		EFB2_04514	0.67	-0.2
4,735,666	+		EFB2_04514	0.67	+1.0
4,735,666	+		EFB2_04514	0.67	+2.0
4,735,666	+		EFB2_04514	0.67	-1.3
4,735,666	+		EFB2_04514	0.67	+1.1
4,735,667	-		EFB2_04514	0.67	+0.6
4,735,667	-		EFB2_04514	0.67	-0.3
4,735,667	-		EFB2_04514	0.67	+1.0
4,735,667	-		EFB2_04514	0.67	+1.6
4,735,667	-		EFB2_04514	0.67	-3.9
4,735,667	-		EFB2_04514	0.67	+0.9
4,735,667	-		EFB2_04514	0.67	-0.6
4,735,667	-		EFB2_04514	0.67	+1.3
4,735,667	-		EFB2_04514	0.67	+0.3
4,735,667	-		EFB2_04514	0.67	-0.1
4,735,667	-		EFB2_04514	0.67	+0.2
4,735,667	-		EFB2_04514	0.67	+0.5
4,735,667	-		EFB2_04514	0.67	+0.1
4,735,667	-		EFB2_04514	0.67	-0.4
4,735,667	-		EFB2_04514	0.67	-0.3
4,735,667	-		EFB2_04514	0.67	-0.2
4,735,680	+		EFB2_04514	0.71	+0.6
4,735,681	-		EFB2_04514	0.71	+0.5
4,735,681	-		EFB2_04514	0.71	+1.1
4,735,681	-		EFB2_04514	0.71	-2.8
4,735,684	+		EFB2_04514	0.72	+0.5
4,735,685	-		EFB2_04514	0.72	-0.3
4,735,685	-		EFB2_04514	0.72	-1.3
4,735,729	+		EFB2_04514	0.84	-1.2
4,735,729	+		EFB2_04514	0.84	+0.6
4,735,729	+		EFB2_04514	0.84	-1.1
4,735,729	+		EFB2_04514	0.84	-0.5
4,735,729	+		EFB2_04514	0.84	-0.4
4,735,729	+		EFB2_04514	0.84	-1.1
4,735,729	+		EFB2_04514	0.84	-0.4
4,735,729	+		EFB2_04514	0.84	-0.5
4,735,729	+		EFB2_04514	0.84	-0.2
4,735,730	-		EFB2_04514	0.84	+1.1
4,735,730	-		EFB2_04514	0.84	-0.9
4,735,730	-		EFB2_04514	0.84	+0.3
4,735,730	-		EFB2_04514	0.84	-0.0
4,735,730	-		EFB2_04514	0.84	+1.2
4,735,730	-		EFB2_04514	0.84	-0.8
4,735,730	-		EFB2_04514	0.84	-0.8
4,735,730	-		EFB2_04514	0.84	+1.1
4,735,730	-		EFB2_04514	0.84	+0.0
4,735,755	+				-0.3
4,735,755	+				-1.1
4,735,755	+				-1.7
4,735,756	-				+0.3
4,735,756	-				+0.2
4,735,756	-				+0.3
4,735,756	-				-1.7
4,735,759	+				+2.0
4,735,759	+				-2.0
4,735,759	+				-0.3
4,735,759	+				-2.2
4,735,760	-				+0.8
4,735,760	-				-0.9
4,735,760	-				+0.1
4,735,760	-				+0.4
4,735,760	-				-0.7
4,735,760	-				-0.7
4,735,760	-				-1.3
4,735,760	-				+0.1
4,735,760	-				-0.1
4,735,760	-				+0.3
4,735,760	-				+1.4
4,735,760	-				+1.2
4,735,768	+				+0.1
4,735,768	+				-0.3
4,735,768	+				-0.5
4,735,768	+				+0.7
4,735,769	-				+0.6
4,735,769	-				-0.6
4,735,769	-				+0.3
4,735,785	+				+0.3
4,735,786	-				+0.7
4,735,817	+				+0.8
4,735,877	+				+1.2
4,735,877	+				-0.6
4,735,877	+				+1.1
4,735,877	+				-0.2
4,735,877	+				-0.5
4,735,877	+				+0.8
4,735,877	+				-0.0
4,735,877	+				+0.1
4,735,877	+				+0.2
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