Strain Fitness in Escherichia fergusonii Becca around EFB2_04238

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_04237 and EFB2_04238 are separated by 64 nucleotidesEFB2_04238 and EFB2_04239 are separated by 7 nucleotides EFB2_04237: EFB2_04237 - Major fimbrial subunit SMF-1, at 4,451,541 to 4,452,089 _04237 EFB2_04238: EFB2_04238 - putative fimbrial chaperone YadV, at 4,452,154 to 4,452,879 _04238 EFB2_04239: EFB2_04239 - Outer membrane usher protein HtrE, at 4,452,887 to 4,455,421 _04239 Position (kb) 4452 4453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4451.422 kb on + strandat 4451.557 kb on + strandat 4451.557 kb on + strandat 4451.557 kb on + strandat 4451.601 kb on - strand, within EFB2_04237at 4451.601 kb on - strand, within EFB2_04237at 4451.607 kb on + strand, within EFB2_04237at 4451.607 kb on + strand, within EFB2_04237at 4451.621 kb on + strand, within EFB2_04237at 4451.621 kb on + strand, within EFB2_04237at 4451.660 kb on + strand, within EFB2_04237at 4451.660 kb on + strand, within EFB2_04237at 4451.661 kb on - strand, within EFB2_04237at 4451.661 kb on - strand, within EFB2_04237at 4451.661 kb on - strand, within EFB2_04237at 4451.663 kb on + strand, within EFB2_04237at 4451.663 kb on + strand, within EFB2_04237at 4451.664 kb on - strand, within EFB2_04237at 4451.664 kb on - strand, within EFB2_04237at 4451.680 kb on + strand, within EFB2_04237at 4451.680 kb on + strand, within EFB2_04237at 4451.680 kb on + strand, within EFB2_04237at 4451.681 kb on - strand, within EFB2_04237at 4451.687 kb on - strand, within EFB2_04237at 4451.687 kb on - strand, within EFB2_04237at 4451.732 kb on + strand, within EFB2_04237at 4451.732 kb on + strand, within EFB2_04237at 4451.732 kb on + strand, within EFB2_04237at 4451.732 kb on + strand, within EFB2_04237at 4451.732 kb on + strand, within EFB2_04237at 4451.733 kb on - strand, within EFB2_04237at 4451.733 kb on - strand, within EFB2_04237at 4451.733 kb on - strand, within EFB2_04237at 4451.783 kb on + strand, within EFB2_04237at 4451.783 kb on + strand, within EFB2_04237at 4451.783 kb on + strand, within EFB2_04237at 4451.789 kb on + strand, within EFB2_04237at 4451.790 kb on - strand, within EFB2_04237at 4451.790 kb on - strand, within EFB2_04237at 4451.805 kb on - strand, within EFB2_04237at 4451.812 kb on - strand, within EFB2_04237at 4451.828 kb on + strand, within EFB2_04237at 4451.829 kb on - strand, within EFB2_04237at 4451.839 kb on + strand, within EFB2_04237at 4451.840 kb on - strand, within EFB2_04237at 4451.840 kb on - strand, within EFB2_04237at 4451.840 kb on - strand, within EFB2_04237at 4451.840 kb on - strand, within EFB2_04237at 4451.840 kb on - strand, within EFB2_04237at 4451.840 kb on - strand, within EFB2_04237at 4451.843 kb on + strand, within EFB2_04237at 4451.843 kb on + strand, within EFB2_04237at 4451.843 kb on + strand, within EFB2_04237at 4451.843 kb on + strand, within EFB2_04237at 4451.843 kb on + strand, within EFB2_04237at 4451.843 kb on + strand, within EFB2_04237at 4451.849 kb on + strand, within EFB2_04237at 4451.849 kb on + strand, within EFB2_04237at 4451.849 kb on + strand, within EFB2_04237at 4451.850 kb on - strand, within EFB2_04237at 4451.862 kb on - strand, within EFB2_04237at 4451.867 kb on + strand, within EFB2_04237at 4451.867 kb on + strand, within EFB2_04237at 4451.868 kb on - strand, within EFB2_04237at 4451.868 kb on - strand, within EFB2_04237at 4451.876 kb on + strand, within EFB2_04237at 4451.877 kb on - strand, within EFB2_04237at 4451.905 kb on + strand, within EFB2_04237at 4451.905 kb on + strand, within EFB2_04237at 4451.906 kb on - strand, within EFB2_04237at 4451.909 kb on + strand, within EFB2_04237at 4451.909 kb on + strand, within EFB2_04237at 4451.909 kb on + strand, within EFB2_04237at 4451.909 kb on + strand, within EFB2_04237at 4451.910 kb on - strand, within EFB2_04237at 4451.912 kb on + strand, within EFB2_04237at 4451.913 kb on - strand, within EFB2_04237at 4451.928 kb on - strand, within EFB2_04237at 4451.928 kb on - strand, within EFB2_04237at 4452.007 kb on - strand, within EFB2_04237at 4452.008 kb on + strand, within EFB2_04237at 4452.008 kb on + strand, within EFB2_04237at 4452.008 kb on + strand, within EFB2_04237at 4452.008 kb on + strand, within EFB2_04237at 4452.009 kb on - strand, within EFB2_04237at 4452.009 kb on - strand, within EFB2_04237at 4452.009 kb on - strand, within EFB2_04237at 4452.009 kb on - strand, within EFB2_04237at 4452.009 kb on - strand, within EFB2_04237at 4452.021 kb on + strand, within EFB2_04237at 4452.022 kb on - strand, within EFB2_04237at 4452.022 kb on - strand, within EFB2_04237at 4452.022 kb on - strand, within EFB2_04237at 4452.038 kb on + strandat 4452.038 kb on + strandat 4452.052 kb on + strandat 4452.053 kb on - strandat 4452.069 kb on + strandat 4452.070 kb on - strandat 4452.071 kb on + strandat 4452.071 kb on + strandat 4452.071 kb on + strandat 4452.072 kb on - strandat 4452.072 kb on - strandat 4452.072 kb on - strandat 4452.109 kb on + strandat 4452.127 kb on - strandat 4452.151 kb on - strandat 4452.576 kb on - strand, within EFB2_04238

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
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4,451,422 + -0.0
4,451,557 + +0.6
4,451,557 + -0.5
4,451,557 + -3.2
4,451,601 - EFB2_04237 0.11 -0.6
4,451,601 - EFB2_04237 0.11 -0.6
4,451,607 + EFB2_04237 0.12 +0.3
4,451,607 + EFB2_04237 0.12 +0.6
4,451,621 + EFB2_04237 0.15 +1.5
4,451,621 + EFB2_04237 0.15 +0.4
4,451,660 + EFB2_04237 0.22 +0.4
4,451,660 + EFB2_04237 0.22 -1.6
4,451,661 - EFB2_04237 0.22 -0.4
4,451,661 - EFB2_04237 0.22 -2.9
4,451,661 - EFB2_04237 0.22 -0.2
4,451,663 + EFB2_04237 0.22 +2.3
4,451,663 + EFB2_04237 0.22 +1.9
4,451,664 - EFB2_04237 0.22 -2.0
4,451,664 - EFB2_04237 0.22 -2.0
4,451,680 + EFB2_04237 0.25 +1.1
4,451,680 + EFB2_04237 0.25 -1.4
4,451,680 + EFB2_04237 0.25 -3.0
4,451,681 - EFB2_04237 0.26 -0.2
4,451,687 - EFB2_04237 0.27 -2.8
4,451,687 - EFB2_04237 0.27 +1.8
4,451,732 + EFB2_04237 0.35 -2.5
4,451,732 + EFB2_04237 0.35 +0.4
4,451,732 + EFB2_04237 0.35 -1.2
4,451,732 + EFB2_04237 0.35 +0.1
4,451,732 + EFB2_04237 0.35 -1.2
4,451,733 - EFB2_04237 0.35 +0.1
4,451,733 - EFB2_04237 0.35 +0.9
4,451,733 - EFB2_04237 0.35 +0.9
4,451,783 + EFB2_04237 0.44 -0.5
4,451,783 + EFB2_04237 0.44 +0.8
4,451,783 + EFB2_04237 0.44 -3.4
4,451,789 + EFB2_04237 0.45 -3.0
4,451,790 - EFB2_04237 0.45 -2.5
4,451,790 - EFB2_04237 0.45 -0.0
4,451,805 - EFB2_04237 0.48 +0.3
4,451,812 - EFB2_04237 0.49 +0.6
4,451,828 + EFB2_04237 0.52 +0.3
4,451,829 - EFB2_04237 0.52 +1.2
4,451,839 + EFB2_04237 0.54 +0.9
4,451,840 - EFB2_04237 0.54 +0.4
4,451,840 - EFB2_04237 0.54 -2.5
4,451,840 - EFB2_04237 0.54 -2.4
4,451,840 - EFB2_04237 0.54 -0.2
4,451,840 - EFB2_04237 0.54 -2.2
4,451,840 - EFB2_04237 0.54 +0.9
4,451,843 + EFB2_04237 0.55 -3.8
4,451,843 + EFB2_04237 0.55 +0.6
4,451,843 + EFB2_04237 0.55 -0.0
4,451,843 + EFB2_04237 0.55 +0.6
4,451,843 + EFB2_04237 0.55 +1.0
4,451,843 + EFB2_04237 0.55 +1.5
4,451,849 + EFB2_04237 0.56 -2.6
4,451,849 + EFB2_04237 0.56 -0.3
4,451,849 + EFB2_04237 0.56 +0.6
4,451,850 - EFB2_04237 0.56 +0.9
4,451,862 - EFB2_04237 0.58 -0.0
4,451,867 + EFB2_04237 0.59 +2.0
4,451,867 + EFB2_04237 0.59 -1.3
4,451,868 - EFB2_04237 0.60 -0.3
4,451,868 - EFB2_04237 0.60 -0.8
4,451,876 + EFB2_04237 0.61 +1.5
4,451,877 - EFB2_04237 0.61 +1.0
4,451,905 + EFB2_04237 0.66 +0.4
4,451,905 + EFB2_04237 0.66 +0.6
4,451,906 - EFB2_04237 0.66 -0.9
4,451,909 + EFB2_04237 0.67 +0.3
4,451,909 + EFB2_04237 0.67 +1.0
4,451,909 + EFB2_04237 0.67 +1.7
4,451,909 + EFB2_04237 0.67 +0.3
4,451,910 - EFB2_04237 0.67 +0.7
4,451,912 + EFB2_04237 0.68 -1.5
4,451,913 - EFB2_04237 0.68 +0.3
4,451,928 - EFB2_04237 0.70 +0.1
4,451,928 - EFB2_04237 0.70 -0.5
4,452,007 - EFB2_04237 0.85 +1.1
4,452,008 + EFB2_04237 0.85 -2.1
4,452,008 + EFB2_04237 0.85 +0.5
4,452,008 + EFB2_04237 0.85 +0.2
4,452,008 + EFB2_04237 0.85 -1.6
4,452,009 - EFB2_04237 0.85 +0.0
4,452,009 - EFB2_04237 0.85 -0.8
4,452,009 - EFB2_04237 0.85 -1.3
4,452,009 - EFB2_04237 0.85 +1.1
4,452,009 - EFB2_04237 0.85 -0.3
4,452,021 + EFB2_04237 0.87 +0.3
4,452,022 - EFB2_04237 0.88 +1.2
4,452,022 - EFB2_04237 0.88 -0.2
4,452,022 - EFB2_04237 0.88 -1.0
4,452,038 + +0.2
4,452,038 + +0.2
4,452,052 + -0.1
4,452,053 - -0.4
4,452,069 + +0.6
4,452,070 - -2.2
4,452,071 + -0.8
4,452,071 + +0.6
4,452,071 + -0.7
4,452,072 - -0.6
4,452,072 - -1.3
4,452,072 - -0.3
4,452,109 + +0.3
4,452,127 - -0.2
4,452,151 - +2.2
4,452,576 - EFB2_04238 0.58 -0.9

Or see this region's nucleotide sequence