Strain Fitness in Escherichia fergusonii Becca around EFB2_03491

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,639,307	+		EFB2_03489	0.70	+0.8
3,639,307	+		EFB2_03489	0.70	+3.4
3,639,307	+		EFB2_03489	0.70	+0.7
3,639,308	-		EFB2_03489	0.70	+1.3
3,639,308	-		EFB2_03489	0.70	-1.0
3,639,322	-		EFB2_03489	0.71	-0.2
3,639,365	+		EFB2_03489	0.74	+1.1
3,639,365	+		EFB2_03489	0.74	-1.1
3,639,365	+		EFB2_03489	0.74	+2.6
3,639,365	+		EFB2_03489	0.74	-0.3
3,639,365	+		EFB2_03489	0.74	-0.6
3,639,365	+		EFB2_03489	0.74	-2.6
3,639,365	+		EFB2_03489	0.74	+0.2
3,639,366	-		EFB2_03489	0.74	+0.6
3,639,366	-		EFB2_03489	0.74	+0.3
3,639,366	-		EFB2_03489	0.74	+1.2
3,639,366	-		EFB2_03489	0.74	-1.6
3,639,379	+		EFB2_03489	0.75	+1.2
3,639,379	+		EFB2_03489	0.75	+0.5
3,639,379	+		EFB2_03489	0.75	+0.3
3,639,379	+		EFB2_03489	0.75	+2.5
3,639,379	+		EFB2_03489	0.75	-1.2
3,639,380	-		EFB2_03489	0.76	+0.9
3,639,380	-		EFB2_03489	0.76	-2.2
3,639,380	-		EFB2_03489	0.76	-0.8
3,639,380	-		EFB2_03489	0.76	+0.8
3,639,380	-		EFB2_03489	0.76	-0.0
3,639,380	-		EFB2_03489	0.76	+0.1
3,639,380	-		EFB2_03489	0.76	+0.3
3,639,386	+		EFB2_03489	0.76	+0.7
3,639,386	+		EFB2_03489	0.76	+1.8
3,639,386	+		EFB2_03489	0.76	+0.4
3,639,386	+		EFB2_03489	0.76	-0.2
3,639,386	+		EFB2_03489	0.76	-0.3
3,639,387	-		EFB2_03489	0.76	-1.5
3,639,387	-		EFB2_03489	0.76	-1.0
3,639,387	-		EFB2_03489	0.76	-3.7
3,639,387	-		EFB2_03489	0.76	+0.2
3,639,399	+		EFB2_03489	0.77	+1.8
3,639,399	+		EFB2_03489	0.77	-1.6
3,639,399	+		EFB2_03489	0.77	+0.4
3,639,399	+		EFB2_03489	0.77	-0.1
3,639,399	+		EFB2_03489	0.77	-1.3
3,639,400	-		EFB2_03489	0.77	+0.3
3,639,400	-		EFB2_03489	0.77	+0.6
3,639,400	-		EFB2_03489	0.77	+0.4
3,639,400	-		EFB2_03489	0.77	+1.1
3,639,436	-		EFB2_03489	0.80	-2.6
3,639,444	+		EFB2_03489	0.81	+0.1
3,639,444	+		EFB2_03489	0.81	+0.9
3,639,445	-		EFB2_03489	0.81	+0.5
3,639,448	+		EFB2_03489	0.81	+1.2
3,639,448	+		EFB2_03489	0.81	+1.1
3,639,448	+		EFB2_03489	0.81	+2.2
3,639,449	-		EFB2_03489	0.81	-1.4
3,639,449	-		EFB2_03489	0.81	-2.6
3,639,449	-		EFB2_03489	0.81	-0.7
3,639,449	-		EFB2_03489	0.81	+1.5
3,639,519	+		EFB2_03489	0.87	+0.6
3,639,519	+		EFB2_03489	0.87	-2.2
3,639,520	-		EFB2_03489	0.87	-2.0
3,639,520	-		EFB2_03489	0.87	+1.7
3,639,539	+		EFB2_03489	0.89	-1.5
3,639,539	+		EFB2_03489	0.89	-1.6
3,639,551	+		EFB2_03489	0.90	+0.6
3,639,551	+		EFB2_03489	0.90	-0.7
3,639,552	-		EFB2_03489	0.90	-0.0
3,639,552	-		EFB2_03489	0.90	-0.1
3,639,552	-		EFB2_03489	0.90	-0.2
3,639,559	-				+1.0
3,639,566	-				+0.4
3,639,566	-				+1.7
3,639,581	+				+0.3
3,639,581	+				-2.6
3,639,582	-				+1.0
3,639,588	+				-2.1
3,639,588	+				-1.4
3,639,588	+				-0.2
3,639,588	+				+0.3
3,639,588	+				-3.1
3,639,588	+				-0.1
3,639,589	-				-0.4
3,639,589	-				-2.6
3,639,589	-				-0.2
3,639,589	-				-0.3
3,639,589	-				+1.0
3,639,594	+				-0.4
3,639,594	+				+0.0
3,639,595	-				+1.2
3,639,610	+				+0.3
3,639,610	+				+1.1
3,639,610	+				-3.2
3,639,610	+				+0.5
3,639,610	+				+1.0
3,639,611	-				-0.7
3,639,611	-				+0.7
3,639,611	-				+0.8
3,639,611	-				+0.9
3,639,611	-				-0.6
3,639,619	+				-0.4
3,639,619	+				+0.5
3,639,619	+				-0.8
3,639,619	+				+0.8
3,639,620	-				-0.3
3,639,620	-				-0.6
3,639,620	-				-0.8
3,639,620	-				-1.5
3,639,620	-				-0.7
3,639,620	-				-0.8
3,639,621	+				+0.7
3,639,621	+				-2.4
3,639,621	+				-1.0
3,639,622	-				+0.9
3,639,632	+				-1.0
3,639,633	-				-1.1
3,639,633	-				+0.2
3,639,633	-				+2.1
3,639,659	+				+0.2
3,639,659	+				+0.3
3,639,660	-				+0.3
3,639,660	-				-0.4
3,639,662	+				-1.2
3,639,662	+				+0.7
3,639,662	+				+0.4
3,639,662	+				+0.2
3,639,662	+				-0.2
3,639,662	+				-0.4
3,639,662	+				-2.6
3,639,662	+				-0.6
3,639,662	+				-2.8
3,639,662	+				+0.6
3,639,662	+				+0.9
3,639,662	+				-1.8
3,639,662	+				+0.9
3,639,662	+				+0.0
3,639,662	+				-0.8
3,639,662	+				+0.6
3,639,662	+				-0.3
3,639,662	+				+0.0
3,639,662	+				-0.1
3,639,662	+				+1.4
3,639,662	+				-0.2
3,639,662	+				+0.9
3,639,662	+				-0.5
3,639,663	-				+0.5
3,639,663	-				-0.2
3,639,663	-				+0.3
3,639,663	-				+1.0
3,639,663	-				-1.7
3,639,663	-				-0.2
3,639,663	-				+0.3
3,639,663	-				-2.4
3,639,663	-				+1.2
3,639,663	-				-3.0
3,639,663	-				-2.6
3,639,663	-				+0.4
3,639,663	-				-0.1
3,639,663	-				-0.2
3,639,663	-				-0.4
3,639,663	-				+0.9
3,639,663	-				+1.3
3,639,663	-				+0.6
3,639,663	-				-1.4
3,639,663	-				-1.0
3,639,663	-				+0.8
3,639,663	-				-2.1
3,639,663	-				-0.4
3,639,663	-				+0.6
3,639,677	-				+0.3
3,639,688	+				-2.4
3,639,824	+		EFB2_03490	0.27	-1.5
3,639,824	+		EFB2_03490	0.27	-2.7
3,639,824	+		EFB2_03490	0.27	-1.3
3,639,824	+		EFB2_03490	0.27	-0.2
3,639,824	+		EFB2_03490	0.27	-0.2
3,639,824	+		EFB2_03490	0.27	+1.6
3,639,824	+		EFB2_03490	0.27	+0.0
3,639,824	+		EFB2_03490	0.27	-1.3
3,639,824	+		EFB2_03490	0.27	+0.8
3,639,824	+		EFB2_03490	0.27	-2.0
3,639,825	-		EFB2_03490	0.28	-0.5
3,639,825	-		EFB2_03490	0.28	-1.2
3,639,825	-		EFB2_03490	0.28	-0.5
3,639,825	-		EFB2_03490	0.28	-2.0
3,639,825	-		EFB2_03490	0.28	-0.3
3,639,825	-		EFB2_03490	0.28	+0.6
3,639,825	-		EFB2_03490	0.28	-0.7
3,639,825	-		EFB2_03490	0.28	+2.3
3,639,825	-		EFB2_03490	0.28	+0.9
3,639,825	-		EFB2_03490	0.28	-1.6
3,639,825	-		EFB2_03490	0.28	+0.2
3,639,825	-		EFB2_03490	0.28	-2.5
3,639,825	-		EFB2_03490	0.28	+2.2
3,639,825	-		EFB2_03490	0.28	+2.6
3,639,825	-		EFB2_03490	0.28	+1.2
3,639,830	+		EFB2_03490	0.28	+1.0
3,639,831	-		EFB2_03490	0.29	-0.4
3,639,837	+		EFB2_03490	0.30	+1.1
3,639,837	+		EFB2_03490	0.30	-3.6
3,639,837	+		EFB2_03490	0.30	-1.3
3,639,837	+		EFB2_03490	0.30	-1.9
3,639,837	+		EFB2_03490	0.30	+1.1
3,639,837	+		EFB2_03490	0.30	-0.8
3,639,838	-		EFB2_03490	0.30	+0.5
3,639,838	-		EFB2_03490	0.30	-1.4
3,639,838	-		EFB2_03490	0.30	+0.5
3,639,838	-		EFB2_03490	0.30	+0.4
3,639,895	+		EFB2_03490	0.39	-2.4
3,639,895	+		EFB2_03490	0.39	-0.4
3,639,896	-		EFB2_03490	0.39	-0.7
3,639,896	-		EFB2_03490	0.39	-0.3
3,639,905	+		EFB2_03490	0.40	-0.9
3,639,906	-		EFB2_03490	0.40	+1.5
3,639,919	+		EFB2_03490	0.43	+1.5
3,639,920	-		EFB2_03490	0.43	-1.9
3,639,920	-		EFB2_03490	0.43	-0.4
3,639,929	+		EFB2_03490	0.44	-0.1
3,639,936	-		EFB2_03490	0.45	-0.5
3,639,983	+		EFB2_03490	0.53	-1.4
3,639,984	-		EFB2_03490	0.53	-0.3
3,639,984	-		EFB2_03490	0.53	+1.5
3,639,984	-		EFB2_03490	0.53	-0.8
3,640,001	-		EFB2_03490	0.56	-1.5
3,640,006	+		EFB2_03490	0.56	+0.8
3,640,007	-		EFB2_03490	0.57	+1.4
3,640,013	-		EFB2_03490	0.57	+0.3
3,640,013	-		EFB2_03490	0.57	+1.3
3,640,020	+		EFB2_03490	0.59	-0.3
3,640,020	+		EFB2_03490	0.59	-0.7
3,640,020	+		EFB2_03490	0.59	-0.1
3,640,046	+		EFB2_03490	0.63	+1.1
3,640,046	+		EFB2_03490	0.63	-2.3
3,640,046	+		EFB2_03490	0.63	-0.0
3,640,053	-		EFB2_03490	0.64	+1.0
3,640,073	+		EFB2_03490	0.67	+1.1
3,640,073	+		EFB2_03490	0.67	+0.9
3,640,074	-		EFB2_03490	0.67	-2.3
3,640,074	-		EFB2_03490	0.67	-2.2
3,640,082	+		EFB2_03490	0.68	+1.1
3,640,163	+		EFB2_03490	0.81	+0.4
3,640,164	-		EFB2_03490	0.81	-3.0
3,640,220	+				+0.4
3,640,220	+				-0.4
3,640,275	-				+0.7
3,640,278	+				+0.6
3,640,278	+				-0.2
3,640,278	+				+0.3
3,640,278	+				-0.5
3,640,278	+				+0.2
3,640,278	+				+0.2
3,640,278	+				-1.3
3,640,278	+				-0.3
3,640,278	+				-1.6
3,640,278	+				-1.5
3,640,278	+				+5.1
3,640,278	+				+1.4
3,640,278	+				-1.7
3,640,278	+				-1.2
3,640,278	+				+0.9
3,640,279	-				+2.8
3,640,279	-				-1.2
3,640,279	-				+1.1
3,640,279	-				-0.2
3,640,279	-				-0.4
3,640,279	-				-0.4
3,640,279	-				+1.9
3,640,279	-				+0.2
3,640,279	-				+0.2
3,640,279	-				+0.2
3,640,282	+				-0.1
3,640,282	+				-0.1
3,640,282	+				+0.4
3,640,282	+				-1.0
3,640,282	+				-2.0
3,640,282	+				+1.0
3,640,282	+				-1.3
3,640,282	+				+0.7
3,640,282	+				+1.1
3,640,282	+				-1.9
3,640,282	+				+2.2
3,640,283	-				-0.0
3,640,283	-				-0.1
3,640,283	-				-2.7
3,640,283	-				+0.0
3,640,283	-				-1.9
3,640,283	-				-2.2
3,640,283	-				-2.1
3,640,355	+				-1.4
3,640,355	+				+0.1
3,640,355	+				-1.9
3,640,356	-				+1.8
3,640,356	-				-0.1
3,640,356	-				-1.7
3,640,356	-				+0.2
3,640,356	-				-1.6
3,640,356	-				-2.0
3,640,356	-				+1.6
3,640,356	-				-2.8
3,640,402	-		EFB2_03491	0.10	-0.6
3,640,402	-		EFB2_03491	0.10	+0.4
3,640,451	+		EFB2_03491	0.15	+0.1
3,640,451	+		EFB2_03491	0.15	-0.0
3,640,451	+		EFB2_03491	0.15	+0.4
3,640,451	+		EFB2_03491	0.15	+1.1
3,640,451	+		EFB2_03491	0.15	+0.7
3,640,452	-		EFB2_03491	0.15	-0.8
3,640,452	-		EFB2_03491	0.15	+0.4
3,640,452	-		EFB2_03491	0.15	-0.5
3,640,452	-		EFB2_03491	0.15	+0.7
3,640,452	-		EFB2_03491	0.15	-0.2
3,640,455	+		EFB2_03491	0.15	-0.5
3,640,455	+		EFB2_03491	0.15	+2.5
3,640,455	+		EFB2_03491	0.15	-0.2
3,640,455	+		EFB2_03491	0.15	-1.3
3,640,456	-		EFB2_03491	0.15	-1.3
3,640,456	-		EFB2_03491	0.15	+0.8
3,640,465	+		EFB2_03491	0.16	+2.2
3,640,465	+		EFB2_03491	0.16	-1.3
3,640,465	+		EFB2_03491	0.16	+0.7
3,640,466	-		EFB2_03491	0.16	-0.6
3,640,483	+		EFB2_03491	0.17	+1.8
3,640,483	+		EFB2_03491	0.17	-0.1
3,640,483	+		EFB2_03491	0.17	-2.4
3,640,483	+		EFB2_03491	0.17	+3.5
3,640,483	+		EFB2_03491	0.17	+0.2
3,640,483	+		EFB2_03491	0.17	+0.8
3,640,483	+		EFB2_03491	0.17	-3.7
3,640,483	+		EFB2_03491	0.17	+0.6
3,640,483	+		EFB2_03491	0.17	+0.1
3,640,483	+		EFB2_03491	0.17	-3.0
3,640,484	-		EFB2_03491	0.17	+0.4
3,640,484	-		EFB2_03491	0.17	+0.1
3,640,484	-		EFB2_03491	0.17	+0.1
3,640,484	-		EFB2_03491	0.17	+0.8
3,640,484	-		EFB2_03491	0.17	-1.2
3,640,484	-		EFB2_03491	0.17	-1.6
3,640,484	-		EFB2_03491	0.17	-1.1
3,640,484	-		EFB2_03491	0.17	+1.0
3,640,484	-		EFB2_03491	0.17	+0.1
3,640,484	-		EFB2_03491	0.17	-1.2
3,640,484	-		EFB2_03491	0.17	-1.0
3,640,484	-		EFB2_03491	0.17	+0.0
3,640,484	-		EFB2_03491	0.17	-0.5
3,640,484	-		EFB2_03491	0.17	+0.5
3,640,484	-		EFB2_03491	0.17	-0.3
3,640,487	+		EFB2_03491	0.18	-1.7
3,640,487	+		EFB2_03491	0.18	+0.4
3,640,487	+		EFB2_03491	0.18	+0.4
3,640,487	+		EFB2_03491	0.18	+1.1
3,640,487	+		EFB2_03491	0.18	+1.3
3,640,487	+		EFB2_03491	0.18	+1.3
3,640,487	+		EFB2_03491	0.18	+1.8
3,640,487	+		EFB2_03491	0.18	-0.1
3,640,487	+		EFB2_03491	0.18	-0.4
3,640,487	+		EFB2_03491	0.18	-0.5
3,640,487	+		EFB2_03491	0.18	+0.3
3,640,487	+		EFB2_03491	0.18	+0.2
3,640,487	+		EFB2_03491	0.18	+0.2
3,640,487	+		EFB2_03491	0.18	-0.1
3,640,487	+		EFB2_03491	0.18	+0.3
3,640,487	+		EFB2_03491	0.18	-0.0
3,640,487	+		EFB2_03491	0.18	+1.9
3,640,487	+		EFB2_03491	0.18	+0.6
3,640,488	-		EFB2_03491	0.18	-1.0
3,640,488	-		EFB2_03491	0.18	-0.4
3,640,488	-		EFB2_03491	0.18	-1.4
3,640,488	-		EFB2_03491	0.18	-0.6
3,640,488	-		EFB2_03491	0.18	-1.5
3,640,488	-		EFB2_03491	0.18	-0.6
3,640,488	-		EFB2_03491	0.18	+0.3
3,640,488	-		EFB2_03491	0.18	+0.6
3,640,488	-		EFB2_03491	0.18	-0.9
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3,640,579	+		EFB2_03491	0.26	-2.3
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3,642,085	-		EFB2_03492	0.49	-1.4
3,642,085	-		EFB2_03492	0.49	+0.2
3,642,085	-		EFB2_03492	0.49	-1.4
3,642,085	-		EFB2_03492	0.49	-2.0
3,642,150	-		EFB2_03492	0.55	-2.5
3,642,150	-		EFB2_03492	0.55	+2.2
3,642,179	-		EFB2_03492	0.58	+0.1
3,642,179	-		EFB2_03492	0.58	-2.5
3,642,179	-		EFB2_03492	0.58	-0.8
3,642,223	+		EFB2_03492	0.62	+0.0
3,642,224	-		EFB2_03492	0.62	+1.4
3,642,224	-		EFB2_03492	0.62	-2.2
3,642,224	-		EFB2_03492	0.62	-0.6
3,642,224	-		EFB2_03492	0.62	+0.3
3,642,258	-		EFB2_03492	0.65	-0.2
3,642,299	+		EFB2_03492	0.69	+1.4
3,642,299	+		EFB2_03492	0.69	+0.1
3,642,299	+		EFB2_03492	0.69	-1.4
3,642,300	-		EFB2_03492	0.69	-1.3