Strain Fitness in Escherichia fergusonii Becca around EFB2_03486

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,634,580	+		EFB2_03485	0.50	-0.6
3,634,580	+		EFB2_03485	0.50	+2.5
3,634,581	-		EFB2_03485	0.50	-0.2
3,634,581	-		EFB2_03485	0.50	+0.3
3,634,653	+		EFB2_03485	0.54	-0.6
3,634,653	+		EFB2_03485	0.54	+0.1
3,634,653	+		EFB2_03485	0.54	+0.6
3,634,653	+		EFB2_03485	0.54	+1.3
3,634,654	-		EFB2_03485	0.54	+0.3
3,634,654	-		EFB2_03485	0.54	-0.3
3,634,654	-		EFB2_03485	0.54	-1.2
3,634,654	-		EFB2_03485	0.54	-1.0
3,634,654	-		EFB2_03485	0.54	+0.2
3,634,654	-		EFB2_03485	0.54	-0.4
3,634,654	-		EFB2_03485	0.54	-0.0
3,634,654	-		EFB2_03485	0.54	+1.6
3,634,654	-		EFB2_03485	0.54	-0.7
3,634,665	-		EFB2_03485	0.55	-0.2
3,634,706	-		EFB2_03485	0.58	+0.7
3,634,708	+		EFB2_03485	0.58	+2.0
3,634,708	+		EFB2_03485	0.58	+0.4
3,634,708	+		EFB2_03485	0.58	+0.7
3,634,708	+		EFB2_03485	0.58	-0.6
3,634,708	+		EFB2_03485	0.58	-1.6
3,634,708	+		EFB2_03485	0.58	-0.6
3,634,709	-		EFB2_03485	0.58	-0.4
3,634,709	-		EFB2_03485	0.58	-0.5
3,634,709	-		EFB2_03485	0.58	-0.7
3,634,709	-		EFB2_03485	0.58	+1.6
3,634,709	-		EFB2_03485	0.58	-0.3
3,634,709	-		EFB2_03485	0.58	+1.6
3,634,709	-		EFB2_03485	0.58	-0.8
3,634,709	-		EFB2_03485	0.58	-0.2
3,634,709	-		EFB2_03485	0.58	+1.0
3,634,709	-		EFB2_03485	0.58	-2.2
3,634,709	-		EFB2_03485	0.58	-0.0
3,634,709	-		EFB2_03485	0.58	-0.6
3,634,715	+		EFB2_03485	0.58	+0.2
3,634,715	+		EFB2_03485	0.58	-0.6
3,634,715	+		EFB2_03485	0.58	-0.8
3,634,715	+		EFB2_03485	0.58	+0.8
3,634,715	+		EFB2_03485	0.58	+0.3
3,634,716	-		EFB2_03485	0.58	-0.3
3,634,716	-		EFB2_03485	0.58	-0.6
3,634,716	-		EFB2_03485	0.58	-1.9
3,634,716	-		EFB2_03485	0.58	-0.2
3,634,716	-		EFB2_03485	0.58	+1.2
3,634,716	-		EFB2_03485	0.58	-2.2
3,634,716	-		EFB2_03485	0.58	+1.0
3,634,716	-		EFB2_03485	0.58	-1.0
3,634,716	-		EFB2_03485	0.58	+0.8
3,634,716	-		EFB2_03485	0.58	-0.3
3,634,716	-		EFB2_03485	0.58	+0.1
3,634,825	+		EFB2_03485	0.65	+1.9
3,634,826	-		EFB2_03485	0.65	-1.8
3,634,826	-		EFB2_03485	0.65	+0.2
3,634,979	+		EFB2_03485	0.75	+0.8
3,634,979	+		EFB2_03485	0.75	-0.3
3,634,980	-		EFB2_03485	0.75	-1.5
3,634,982	+		EFB2_03485	0.75	-1.6
3,634,983	-		EFB2_03485	0.75	+1.4
3,634,983	-		EFB2_03485	0.75	+4.0
3,634,983	-		EFB2_03485	0.75	+0.3
3,634,983	-		EFB2_03485	0.75	-0.6
3,635,011	-		EFB2_03485	0.77	-0.5
3,635,169	+		EFB2_03485	0.87	-0.8
3,635,170	-		EFB2_03485	0.87	-0.5
3,635,170	-		EFB2_03485	0.87	-1.4
3,635,170	-		EFB2_03485	0.87	-1.7
3,635,170	-		EFB2_03485	0.87	-0.2
3,635,170	-		EFB2_03485	0.87	+0.3
3,635,170	-		EFB2_03485	0.87	-0.3
3,635,187	+		EFB2_03485	0.88	-1.6
3,635,188	-		EFB2_03485	0.88	-3.2
3,635,197	-		EFB2_03485	0.88	-1.4
3,635,197	-		EFB2_03485	0.88	-3.3
3,635,197	-		EFB2_03485	0.88	-0.2
3,635,260	-				-0.6
3,635,260	-				+0.1
3,635,284	+				-0.8
3,635,284	+				+1.6
3,635,284	+				-0.2
3,635,285	-				-0.9
3,635,285	-				-1.3
3,635,285	-				+0.5
3,635,285	-				+1.2
3,635,285	-				-0.3
3,635,315	+				+2.8
3,635,315	+				+0.6
3,635,315	+				-1.3
3,635,315	+				-1.0
3,635,315	+				+1.6
3,635,316	-				-0.6
3,635,316	-				-0.6
3,635,316	-				+2.0
3,635,337	+				+1.2
3,635,337	+				+0.2
3,635,337	+				+0.4
3,635,337	+				+2.2
3,635,338	-				-0.3
3,635,338	-				-0.3
3,635,338	-				+0.5
3,635,338	-				-0.2
3,635,338	-				-1.2
3,635,356	+				+0.5
3,635,356	+				-0.2
3,635,356	+				+2.7
3,635,356	+				+0.4
3,635,356	+				-0.8
3,635,356	+				-1.2
3,635,357	-				+0.0
3,635,357	-				+0.2
3,635,357	-				+2.5
3,635,357	-				-0.8
3,635,370	+				+1.6
3,635,465	+				+0.8
3,635,466	-				-0.8
3,635,466	-				+0.2
3,635,483	-				+1.0
3,635,483	-				+1.2
3,635,483	-				+0.4
3,635,483	-				+0.9
3,635,483	-				-1.2
3,635,498	+				+0.5
3,635,499	-				-0.3
3,635,499	-				+0.3
3,635,499	-				-2.1
3,635,501	+				-0.5
3,635,532	-				+0.5
3,635,532	-				+0.8
3,635,583	-		EFB2_03486	0.11	+3.8
3,635,583	-		EFB2_03486	0.11	+1.2
3,635,614	-		EFB2_03486	0.16	+0.5
3,635,614	-		EFB2_03486	0.16	-0.8
3,635,614	-		EFB2_03486	0.16	+0.7
3,635,614	-		EFB2_03486	0.16	-0.9
3,635,614	-		EFB2_03486	0.16	-2.5
3,635,614	-		EFB2_03486	0.16	-0.6
3,635,614	-		EFB2_03486	0.16	-1.0
3,635,614	-		EFB2_03486	0.16	-0.2
3,635,614	-		EFB2_03486	0.16	-1.9
3,635,614	-		EFB2_03486	0.16	+1.1
3,635,614	-		EFB2_03486	0.16	+0.8
3,635,614	-		EFB2_03486	0.16	+1.9
3,635,614	-		EFB2_03486	0.16	-2.7
3,635,614	-		EFB2_03486	0.16	+1.8
3,635,614	-		EFB2_03486	0.16	-1.5
3,635,614	-		EFB2_03486	0.16	+1.2
3,635,614	-		EFB2_03486	0.16	-0.8
3,635,614	-		EFB2_03486	0.16	-0.6
3,635,614	-		EFB2_03486	0.16	+1.3
3,635,614	-		EFB2_03486	0.16	-1.7
3,635,614	-		EFB2_03486	0.16	-2.6
3,635,614	-		EFB2_03486	0.16	+1.2
3,635,614	-		EFB2_03486	0.16	+1.3
3,635,618	-		EFB2_03486	0.17	+1.3
3,635,618	-		EFB2_03486	0.17	+0.3
3,635,618	-		EFB2_03486	0.17	+0.3
3,635,618	-		EFB2_03486	0.17	-0.6
3,635,618	-		EFB2_03486	0.17	-1.0
3,635,618	-		EFB2_03486	0.17	+1.0
3,635,618	-		EFB2_03486	0.17	-2.6
3,635,618	-		EFB2_03486	0.17	-0.1
3,635,618	-		EFB2_03486	0.17	+0.2
3,635,618	-		EFB2_03486	0.17	+1.3
3,635,618	-		EFB2_03486	0.17	+2.9
3,635,637	-		EFB2_03486	0.20	-1.3
3,635,679	-		EFB2_03486	0.28	+1.6
3,635,769	-		EFB2_03486	0.44	-3.9
3,635,807	-		EFB2_03486	0.50	-2.7
3,635,807	-		EFB2_03486	0.50	-1.7
3,635,807	-		EFB2_03486	0.50	+0.1
3,635,807	-		EFB2_03486	0.50	-0.4
3,635,807	-		EFB2_03486	0.50	+0.9
3,635,807	-		EFB2_03486	0.50	-1.5
3,635,807	-		EFB2_03486	0.50	+0.9
3,635,807	-		EFB2_03486	0.50	+1.4
3,635,871	-		EFB2_03486	0.62	+0.5
3,635,874	+		EFB2_03486	0.62	+0.6
3,635,875	-		EFB2_03486	0.62	+0.8
3,635,875	-		EFB2_03486	0.62	+1.0
3,635,875	-		EFB2_03486	0.62	-1.0
3,635,882	-		EFB2_03486	0.64	+0.3
3,635,882	-		EFB2_03486	0.64	-1.5
3,635,882	-		EFB2_03486	0.64	-1.0
3,635,882	-		EFB2_03486	0.64	-0.4
3,635,882	-		EFB2_03486	0.64	+0.2
3,635,882	-		EFB2_03486	0.64	-0.6
3,635,882	-		EFB2_03486	0.64	-3.4
3,635,882	-		EFB2_03486	0.64	+2.4
3,635,882	-		EFB2_03486	0.64	+1.0
3,635,882	-		EFB2_03486	0.64	+1.6
3,635,884	-		EFB2_03486	0.64	-1.3
3,635,884	-		EFB2_03486	0.64	-1.7
3,635,884	-		EFB2_03486	0.64	+0.7
3,635,884	-		EFB2_03486	0.64	+0.7
3,635,884	-		EFB2_03486	0.64	+1.4
3,635,884	-		EFB2_03486	0.64	-2.0
3,635,884	-		EFB2_03486	0.64	-3.6
3,635,884	-		EFB2_03486	0.64	-0.0
3,635,884	-		EFB2_03486	0.64	-2.1
3,635,884	-		EFB2_03486	0.64	-0.1
3,635,884	-		EFB2_03486	0.64	-1.0
3,635,884	-		EFB2_03486	0.64	-1.9
3,635,884	-		EFB2_03486	0.64	+0.1
3,635,884	-		EFB2_03486	0.64	-1.6
3,635,884	-		EFB2_03486	0.64	+2.8
3,635,884	-		EFB2_03486	0.64	-1.2
3,635,884	-		EFB2_03486	0.64	-1.2
3,635,884	-		EFB2_03486	0.64	-0.9
3,635,884	-		EFB2_03486	0.64	-0.2
3,635,884	-		EFB2_03486	0.64	+0.8
3,635,884	-		EFB2_03486	0.64	-1.6
3,635,884	-		EFB2_03486	0.64	-0.6
3,635,884	-		EFB2_03486	0.64	+0.4
3,635,915	-		EFB2_03486	0.70	+0.1
3,635,915	-		EFB2_03486	0.70	+0.3
3,635,958	-		EFB2_03486	0.77	+0.2
3,635,972	-		EFB2_03486	0.80	+0.8
3,636,089	-				+0.6
3,636,089	-				+1.3
3,636,089	-				+1.6
3,636,089	-				+1.3
3,636,089	-				+0.1
3,636,089	-				-1.0
3,636,089	-				+1.8
3,636,089	-				-2.0
3,636,089	-				-0.7
3,636,089	-				+0.7
3,636,089	-				+0.7
3,636,089	-				+0.2
3,636,089	-				+0.4
3,636,089	-				+0.7
3,636,089	-				-0.4
3,636,089	-				+1.6
3,636,089	-				-0.4
3,636,089	-				-2.5
3,636,089	-				-0.3
3,636,091	-				-0.4
3,636,091	-				-0.6
3,636,091	-				+0.3
3,636,091	-				-0.3
3,636,091	-				+2.2
3,636,091	-				-0.2
3,636,091	-				+1.0
3,636,117	+				-0.8
3,636,117	+				-1.4
3,636,117	+				+4.8
3,636,117	+				-0.4
3,636,117	+				+0.2
3,636,117	+				+0.6
3,636,117	+				+2.0
3,636,117	+				-0.7
3,636,117	+				+0.2
3,636,117	+				+2.5
3,636,117	+				-1.3
3,636,117	+				+0.2
3,636,117	+				-0.4
3,636,117	+				+0.6
3,636,117	+				-1.1
3,636,117	+				+0.8
3,636,117	+				-0.3
3,636,117	+				-0.2
3,636,117	+				+1.2
3,636,117	+				-0.8
3,636,117	+				-2.4
3,636,117	+				-1.9
3,636,117	+				+1.8
3,636,117	+				+0.4
3,636,117	+				-0.1
3,636,117	+				+0.6
3,636,118	-				-0.8
3,636,118	-				-0.3
3,636,118	-				-0.2
3,636,118	-				-0.0
3,636,118	-				+1.6
3,636,118	-				-0.1
3,636,118	-				+1.1
3,636,118	-				-0.5
3,636,118	-				-1.5
3,636,118	-				-1.6
3,636,118	-				-1.9
3,636,118	-				-0.6
3,636,118	-				+0.4
3,636,118	-				-0.3
3,636,118	-				-2.6
3,636,118	-				-0.2
3,636,118	-				+1.1
3,636,118	-				+0.2
3,636,118	-				+2.9
3,636,118	-				-1.3
3,636,118	-				+0.7
3,636,118	-				+1.0
3,636,118	-				+1.4
3,636,118	-				-0.3
3,636,118	-				-0.8
3,636,118	-				+0.4
3,636,118	-				-0.2
3,636,118	-				+0.8
3,636,118	-				-0.0
3,636,118	-				-0.4
3,636,177	+				-0.6
3,636,178	-				-1.1
3,636,182	+				+2.0
3,636,182	+				-0.2
3,636,182	+				+1.3
3,636,182	+				+1.2
3,636,182	+				+0.8
3,636,182	+				+0.3
3,636,182	+				-0.8
3,636,182	+				+0.1
3,636,183	-				-0.6
3,636,183	-				-0.0
3,636,183	-				+0.2
3,636,183	-				-0.1
3,636,183	-				+0.0
3,636,183	-				+1.7
3,636,183	-				-1.1
3,636,183	-				+0.4
3,636,183	-				-0.8
3,636,183	-				+0.4
3,636,183	-				-0.2
3,636,183	-				-0.4
3,636,193	+				+1.1
3,636,193	+				+0.5
3,636,194	-				+0.8
3,636,231	-				+0.5
3,636,237	+				-2.5
3,636,266	+				-0.0
3,636,266	+				+0.3
3,636,267	-				-0.2
3,636,276	+				-1.7
3,636,276	+				+1.2
3,636,276	+				+1.1
3,636,276	+				-1.6
3,636,276	+				-2.1
3,636,276	+				-0.2
3,636,277	-				-1.5
3,636,286	+				-0.9
3,636,286	+				+1.8
3,636,286	+				-1.5
3,636,287	-				+1.8
3,636,324	+				+0.5
3,636,324	+				+0.4
3,636,325	-				+0.8
3,636,325	-				-0.2
3,636,325	-				-0.4
3,636,348	+				-1.1
3,636,348	+				-0.1
3,636,348	+				+0.5
3,636,348	+				-0.7
3,636,348	+				-2.2
3,636,348	+				-1.2
3,636,349	-				-0.7
3,636,349	-				-0.3
3,636,349	-				-2.4
3,636,349	-				-2.2
3,636,349	-				-2.1
3,636,349	-				-2.2
3,636,349	-				+0.4
3,636,349	-				-1.9
3,636,349	-				-0.6
3,636,361	+				-0.4
3,636,362	-				+0.6
3,636,362	-				+1.7
3,636,362	-				-0.6
3,636,385	+				+0.5
3,636,385	+				-2.8
3,636,385	+				+1.6
3,636,385	+				+0.3
3,636,385	+				+0.4
3,636,385	+				-0.9
3,636,385	+				+1.3
3,636,385	+				+0.1
3,636,385	+				+1.4
3,636,386	-				-0.6
3,636,386	-				-2.7
3,636,386	-				+0.8
3,636,386	-				-0.4
3,636,386	-				-1.1
3,636,386	-				-0.7
3,636,386	-				-0.4
3,636,386	-				-0.8
3,636,386	-				+0.6
3,636,386	-				+0.7
3,636,386	-				-3.2
3,636,393	+				-1.0
3,636,393	+				+0.8
3,636,393	+				+1.4
3,636,393	+				+1.1
3,636,393	+				-1.3
3,636,393	+				+0.2
3,636,393	+				-1.6
3,636,393	+				+0.7
3,636,393	+				+1.6
3,636,394	-				-2.4
3,636,394	-				-0.1
3,636,394	-				+0.3
3,636,394	-				-1.2
3,636,394	-				+2.5
3,636,394	-				-3.0
3,636,394	-				-0.7
3,636,397	+				+1.1
3,636,397	+				-0.9
3,636,397	+				-2.3
3,636,397	+				+1.3
3,636,397	+				+2.2
3,636,398	-				-0.3
3,636,398	-				-1.5
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