Strain Fitness in Escherichia fergusonii Becca around EFB2_03343

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,498,777	+		EFB2_03341	0.74	-0.3
3,498,777	+		EFB2_03341	0.74	-0.3
3,498,777	+		EFB2_03341	0.74	+1.5
3,498,777	+		EFB2_03341	0.74	-2.4
3,498,777	+		EFB2_03341	0.74	-1.8
3,498,778	-		EFB2_03341	0.74	-3.4
3,498,778	-		EFB2_03341	0.74	-3.0
3,498,778	-		EFB2_03341	0.74	-0.7
3,498,778	-		EFB2_03341	0.74	+0.6
3,498,778	-		EFB2_03341	0.74	-1.4
3,498,779	+		EFB2_03341	0.74	+0.2
3,498,780	-		EFB2_03341	0.74	-0.0
3,498,780	-		EFB2_03341	0.74	+0.2
3,498,780	-		EFB2_03341	0.74	-0.6
3,498,812	+		EFB2_03341	0.77	-0.6
3,498,813	-		EFB2_03341	0.78	+5.0
3,498,813	-		EFB2_03341	0.78	-1.5
3,498,813	-		EFB2_03341	0.78	+1.0
3,498,817	+		EFB2_03341	0.78	+0.8
3,498,818	-		EFB2_03341	0.78	-1.8
3,498,818	-		EFB2_03341	0.78	-2.8
3,498,846	+		EFB2_03341	0.81	+0.3
3,498,846	+		EFB2_03341	0.81	+1.5
3,498,846	+		EFB2_03341	0.81	-0.4
3,498,847	-		EFB2_03341	0.81	-1.1
3,498,865	+		EFB2_03341	0.82	-1.2
3,498,865	+		EFB2_03341	0.82	-1.3
3,498,865	+		EFB2_03341	0.82	-1.1
3,498,865	+		EFB2_03341	0.82	-1.7
3,498,865	+		EFB2_03341	0.82	+1.4
3,498,865	+		EFB2_03341	0.82	-0.6
3,498,865	+		EFB2_03341	0.82	+0.2
3,498,866	-		EFB2_03341	0.83	+2.0
3,498,866	-		EFB2_03341	0.83	+0.7
3,498,866	-		EFB2_03341	0.83	+0.8
3,498,866	-		EFB2_03341	0.83	+0.3
3,498,866	-		EFB2_03341	0.83	-3.0
3,498,866	-		EFB2_03341	0.83	-1.9
3,498,866	-		EFB2_03341	0.83	-0.4
3,498,866	-		EFB2_03341	0.83	+0.8
3,498,866	-		EFB2_03341	0.83	+0.3
3,498,868	+		EFB2_03341	0.83	-0.7
3,498,999	+				-2.5
3,499,000	-				-1.2
3,499,128	-		EFB2_03342	0.11	+0.4
3,499,133	+		EFB2_03342	0.12	-0.1
3,499,133	+		EFB2_03342	0.12	+0.4
3,499,133	+		EFB2_03342	0.12	+0.0
3,499,133	+		EFB2_03342	0.12	+0.3
3,499,133	+		EFB2_03342	0.12	+0.6
3,499,133	+		EFB2_03342	0.12	-0.0
3,499,134	-		EFB2_03342	0.12	-2.5
3,499,134	-		EFB2_03342	0.12	+0.0
3,499,134	-		EFB2_03342	0.12	+0.8
3,499,134	-		EFB2_03342	0.12	+1.4
3,499,134	-		EFB2_03342	0.12	+0.6
3,499,134	-		EFB2_03342	0.12	-3.1
3,499,134	-		EFB2_03342	0.12	-0.7
3,499,134	-		EFB2_03342	0.12	+0.2
3,499,136	+		EFB2_03342	0.12	+0.4
3,499,136	+		EFB2_03342	0.12	+1.2
3,499,136	+		EFB2_03342	0.12	-1.8
3,499,136	+		EFB2_03342	0.12	+0.9
3,499,136	+		EFB2_03342	0.12	-1.2
3,499,137	-		EFB2_03342	0.12	+0.4
3,499,137	-		EFB2_03342	0.12	-0.3
3,499,137	-		EFB2_03342	0.12	+0.2
3,499,137	-		EFB2_03342	0.12	-0.3
3,499,137	-		EFB2_03342	0.12	-0.1
3,499,137	-		EFB2_03342	0.12	+1.6
3,499,184	+		EFB2_03342	0.19	-1.3
3,499,185	-		EFB2_03342	0.19	+0.6
3,499,185	-		EFB2_03342	0.19	+1.7
3,499,185	-		EFB2_03342	0.19	-0.3
3,499,186	+		EFB2_03342	0.19	+2.2
3,499,186	+		EFB2_03342	0.19	-1.6
3,499,186	+		EFB2_03342	0.19	-0.5
3,499,186	+		EFB2_03342	0.19	+0.7
3,499,186	+		EFB2_03342	0.19	-0.1
3,499,186	+		EFB2_03342	0.19	+1.9
3,499,186	+		EFB2_03342	0.19	-0.2
3,499,186	+		EFB2_03342	0.19	-0.2
3,499,186	+		EFB2_03342	0.19	-2.1
3,499,186	+		EFB2_03342	0.19	+0.4
3,499,186	+		EFB2_03342	0.19	-1.9
3,499,186	+		EFB2_03342	0.19	-0.1
3,499,186	+		EFB2_03342	0.19	-0.2
3,499,186	+		EFB2_03342	0.19	+0.2
3,499,186	+		EFB2_03342	0.19	-0.9
3,499,186	+		EFB2_03342	0.19	-2.2
3,499,186	+		EFB2_03342	0.19	-1.3
3,499,186	+		EFB2_03342	0.19	-2.8
3,499,186	+		EFB2_03342	0.19	+0.6
3,499,186	+		EFB2_03342	0.19	-0.9
3,499,186	+		EFB2_03342	0.19	+0.9
3,499,186	+		EFB2_03342	0.19	-1.3
3,499,186	+		EFB2_03342	0.19	+0.3
3,499,186	+		EFB2_03342	0.19	-1.5
3,499,186	+		EFB2_03342	0.19	+0.8
3,499,186	+		EFB2_03342	0.19	-1.6
3,499,186	+		EFB2_03342	0.19	-0.2
3,499,186	+		EFB2_03342	0.19	-2.5
3,499,186	+		EFB2_03342	0.19	-1.2
3,499,186	+		EFB2_03342	0.19	-0.9
3,499,186	+		EFB2_03342	0.19	+1.2
3,499,186	+		EFB2_03342	0.19	-0.8
3,499,186	+		EFB2_03342	0.19	+0.3
3,499,186	+		EFB2_03342	0.19	+1.1
3,499,186	+		EFB2_03342	0.19	-0.8
3,499,186	+		EFB2_03342	0.19	-1.4
3,499,186	+		EFB2_03342	0.19	-2.6
3,499,186	+		EFB2_03342	0.19	+0.6
3,499,186	+		EFB2_03342	0.19	+0.9
3,499,186	+		EFB2_03342	0.19	-1.0
3,499,186	+		EFB2_03342	0.19	-1.1
3,499,186	+		EFB2_03342	0.19	-1.3
3,499,187	-		EFB2_03342	0.19	+0.6
3,499,187	-		EFB2_03342	0.19	-1.5
3,499,187	-		EFB2_03342	0.19	-0.1
3,499,187	-		EFB2_03342	0.19	+0.7
3,499,187	-		EFB2_03342	0.19	+0.9
3,499,187	-		EFB2_03342	0.19	+0.6
3,499,187	-		EFB2_03342	0.19	+0.0
3,499,187	-		EFB2_03342	0.19	+2.2
3,499,187	-		EFB2_03342	0.19	+0.1
3,499,187	-		EFB2_03342	0.19	+0.3
3,499,187	-		EFB2_03342	0.19	-1.6
3,499,187	-		EFB2_03342	0.19	-3.0
3,499,187	-		EFB2_03342	0.19	+1.1
3,499,187	-		EFB2_03342	0.19	-0.7
3,499,187	-		EFB2_03342	0.19	+1.6
3,499,187	-		EFB2_03342	0.19	+0.8
3,499,187	-		EFB2_03342	0.19	-0.6
3,499,187	-		EFB2_03342	0.19	-2.5
3,499,187	-		EFB2_03342	0.19	+0.7
3,499,187	-		EFB2_03342	0.19	+1.7
3,499,187	-		EFB2_03342	0.19	-3.1
3,499,187	-		EFB2_03342	0.19	+0.6
3,499,187	-		EFB2_03342	0.19	-1.5
3,499,187	-		EFB2_03342	0.19	-0.7
3,499,187	-		EFB2_03342	0.19	-0.8
3,499,187	-		EFB2_03342	0.19	-0.1
3,499,187	-		EFB2_03342	0.19	+0.3
3,499,187	-		EFB2_03342	0.19	+0.5
3,499,187	-		EFB2_03342	0.19	-2.1
3,499,187	-		EFB2_03342	0.19	+0.6
3,499,187	-		EFB2_03342	0.19	+0.1
3,499,187	-		EFB2_03342	0.19	-0.0
3,499,187	-		EFB2_03342	0.19	+0.2
3,499,187	-		EFB2_03342	0.19	+0.6
3,499,187	-		EFB2_03342	0.19	-1.2
3,499,187	-		EFB2_03342	0.19	+0.5
3,499,187	-		EFB2_03342	0.19	+1.4
3,499,187	-		EFB2_03342	0.19	-2.5
3,499,187	-		EFB2_03342	0.19	-0.3
3,499,187	-		EFB2_03342	0.19	-2.8
3,499,187	-		EFB2_03342	0.19	+0.6
3,499,187	-		EFB2_03342	0.19	-0.5
3,499,187	-		EFB2_03342	0.19	-2.2
3,499,187	-		EFB2_03342	0.19	-1.2
3,499,187	-		EFB2_03342	0.19	-0.3
3,499,187	-		EFB2_03342	0.19	-0.6
3,499,187	-		EFB2_03342	0.19	+0.1
3,499,187	-		EFB2_03342	0.19	+0.8
3,499,187	-		EFB2_03342	0.19	-1.1
3,499,187	-		EFB2_03342	0.19	+0.1
3,499,187	-		EFB2_03342	0.19	+0.7
3,499,187	-		EFB2_03342	0.19	-2.2
3,499,187	-		EFB2_03342	0.19	-1.0
3,499,187	-		EFB2_03342	0.19	-0.8
3,499,187	-		EFB2_03342	0.19	-0.3
3,499,286	+		EFB2_03342	0.34	+1.2
3,499,287	-		EFB2_03342	0.34	-0.0
3,499,287	-		EFB2_03342	0.34	-1.8
3,499,287	-		EFB2_03342	0.34	-2.7
3,499,287	-		EFB2_03342	0.34	+0.4
3,499,287	-		EFB2_03342	0.34	+0.2
3,499,295	+		EFB2_03342	0.35	+0.9
3,499,295	+		EFB2_03342	0.35	+0.6
3,499,295	+		EFB2_03342	0.35	+0.6
3,499,295	+		EFB2_03342	0.35	-3.2
3,499,296	-		EFB2_03342	0.35	+0.3
3,499,296	-		EFB2_03342	0.35	+1.4
3,499,296	-		EFB2_03342	0.35	+0.4
3,499,296	-		EFB2_03342	0.35	-2.5
3,499,296	-		EFB2_03342	0.35	-1.0
3,499,296	-		EFB2_03342	0.35	+0.2
3,499,296	-		EFB2_03342	0.35	-2.0
3,499,296	-		EFB2_03342	0.35	-0.6
3,499,296	-		EFB2_03342	0.35	+0.7
3,499,296	-		EFB2_03342	0.35	-0.5
3,499,322	+		EFB2_03342	0.39	+1.7
3,499,322	+		EFB2_03342	0.39	-0.6
3,499,322	+		EFB2_03342	0.39	-0.6
3,499,322	+		EFB2_03342	0.39	-0.8
3,499,322	+		EFB2_03342	0.39	-1.4
3,499,322	+		EFB2_03342	0.39	+0.2
3,499,322	+		EFB2_03342	0.39	+2.1
3,499,323	-		EFB2_03342	0.39	-0.7
3,499,323	-		EFB2_03342	0.39	+0.5
3,499,323	-		EFB2_03342	0.39	+2.5
3,499,323	-		EFB2_03342	0.39	+1.8
3,499,323	-		EFB2_03342	0.39	+0.6
3,499,323	-		EFB2_03342	0.39	-1.9
3,499,323	-		EFB2_03342	0.39	+0.4
3,499,325	+		EFB2_03342	0.39	-1.2
3,499,325	+		EFB2_03342	0.39	-1.5
3,499,326	-		EFB2_03342	0.40	-0.8
3,499,326	-		EFB2_03342	0.40	-0.5
3,499,326	-		EFB2_03342	0.40	-2.7
3,499,385	+		EFB2_03342	0.48	+3.7
3,499,385	+		EFB2_03342	0.48	+0.8
3,499,385	+		EFB2_03342	0.48	-0.3
3,499,472	+		EFB2_03342	0.61	+0.6
3,499,472	+		EFB2_03342	0.61	-0.3
3,499,473	-		EFB2_03342	0.61	-2.2
3,499,501	+		EFB2_03342	0.65	+0.2
3,499,501	+		EFB2_03342	0.65	-1.7
3,499,501	+		EFB2_03342	0.65	+0.6
3,499,502	-		EFB2_03342	0.65	-1.8
3,499,502	-		EFB2_03342	0.65	+0.2
3,499,502	-		EFB2_03342	0.65	+1.8
3,499,502	-		EFB2_03342	0.65	-1.0
3,499,502	-		EFB2_03342	0.65	-0.8
3,499,502	-		EFB2_03342	0.65	-0.2
3,499,502	-		EFB2_03342	0.65	+1.6
3,499,542	+		EFB2_03342	0.71	+0.2
3,499,542	+		EFB2_03342	0.71	+0.6
3,499,542	+		EFB2_03342	0.71	+0.2
3,499,542	+		EFB2_03342	0.71	+1.2
3,499,542	+		EFB2_03342	0.71	+1.1
3,499,542	+		EFB2_03342	0.71	+1.0
3,499,543	-		EFB2_03342	0.71	+1.6
3,499,543	-		EFB2_03342	0.71	-0.5
3,499,543	-		EFB2_03342	0.71	+0.4
3,499,543	-		EFB2_03342	0.71	+0.2
3,499,543	-		EFB2_03342	0.71	-2.1
3,499,543	-		EFB2_03342	0.71	+2.9
3,499,543	-		EFB2_03342	0.71	-0.6
3,499,543	-		EFB2_03342	0.71	+0.3
3,499,543	-		EFB2_03342	0.71	+0.1
3,499,545	+		EFB2_03342	0.71	-0.4
3,499,546	-		EFB2_03342	0.71	+0.9
3,499,546	-		EFB2_03342	0.71	-1.8
3,499,546	-		EFB2_03342	0.71	-0.8
3,499,546	-		EFB2_03342	0.71	-2.1
3,499,548	+		EFB2_03342	0.72	+0.2
3,499,548	+		EFB2_03342	0.72	-2.8
3,499,548	+		EFB2_03342	0.72	+1.2
3,499,548	+		EFB2_03342	0.72	+0.0
3,499,548	+		EFB2_03342	0.72	-1.2
3,499,548	+		EFB2_03342	0.72	-0.0
3,499,548	+		EFB2_03342	0.72	-2.3
3,499,548	+		EFB2_03342	0.72	+0.4
3,499,548	+		EFB2_03342	0.72	+2.6
3,499,548	+		EFB2_03342	0.72	-0.6
3,499,548	+		EFB2_03342	0.72	-2.2
3,499,548	+		EFB2_03342	0.72	-0.4
3,499,548	+		EFB2_03342	0.72	+0.7
3,499,549	-		EFB2_03342	0.72	-1.2
3,499,549	-		EFB2_03342	0.72	-3.3
3,499,549	-		EFB2_03342	0.72	+1.5
3,499,549	-		EFB2_03342	0.72	+1.7
3,499,549	-		EFB2_03342	0.72	-2.6
3,499,549	-		EFB2_03342	0.72	-3.1
3,499,549	-		EFB2_03342	0.72	+0.1
3,499,549	-		EFB2_03342	0.72	-1.2
3,499,549	-		EFB2_03342	0.72	+0.1
3,499,549	-		EFB2_03342	0.72	-2.6
3,499,549	-		EFB2_03342	0.72	+0.2
3,499,549	-		EFB2_03342	0.72	-0.5
3,499,549	-		EFB2_03342	0.72	-1.9
3,499,549	-		EFB2_03342	0.72	+0.6
3,499,549	-		EFB2_03342	0.72	-0.2
3,499,552	+		EFB2_03342	0.72	+0.8
3,499,584	+		EFB2_03342	0.77	-0.3
3,499,584	+		EFB2_03342	0.77	+3.4
3,499,584	+		EFB2_03342	0.77	-1.9
3,499,585	-		EFB2_03342	0.77	-1.1
3,499,585	-		EFB2_03342	0.77	+2.1
3,499,585	-		EFB2_03342	0.77	+1.2
3,499,585	-		EFB2_03342	0.77	+0.3
3,499,585	-		EFB2_03342	0.77	+1.1
3,499,585	-		EFB2_03342	0.77	+0.1
3,499,585	-		EFB2_03342	0.77	+1.2
3,499,585	-		EFB2_03342	0.77	+2.0
3,499,585	-		EFB2_03342	0.77	-0.9
3,499,585	-		EFB2_03342	0.77	-2.4
3,499,593	+		EFB2_03342	0.78	-0.4
3,499,593	+		EFB2_03342	0.78	-1.7
3,499,593	+		EFB2_03342	0.78	+1.5
3,499,593	+		EFB2_03342	0.78	+2.1
3,499,593	+		EFB2_03342	0.78	-2.4
3,499,593	+		EFB2_03342	0.78	-0.2
3,499,593	+		EFB2_03342	0.78	-1.9
3,499,593	+		EFB2_03342	0.78	-0.6
3,499,594	-		EFB2_03342	0.78	-1.4
3,499,594	-		EFB2_03342	0.78	-0.4
3,499,594	-		EFB2_03342	0.78	+1.0
3,499,594	-		EFB2_03342	0.78	-0.9
3,499,594	-		EFB2_03342	0.78	+0.9
3,499,594	-		EFB2_03342	0.78	+0.4
3,499,594	-		EFB2_03342	0.78	+3.3
3,499,594	-		EFB2_03342	0.78	+0.6
3,499,632	+		EFB2_03342	0.84	-0.8
3,499,633	-		EFB2_03342	0.84	-0.1
3,499,633	-		EFB2_03342	0.84	+0.7
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