Strain Fitness in Escherichia fergusonii Becca around EFB2_03248

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,398,043	+				-2.1
3,398,043	+				+1.0
3,398,043	+				-2.6
3,398,043	+				+2.1
3,398,044	-				+1.1
3,398,044	-				+2.7
3,398,108	+				+0.2
3,398,108	+				+0.7
3,398,108	+				+1.0
3,398,108	+				-0.2
3,398,108	+				-2.0
3,398,108	+				-0.7
3,398,108	+				-1.4
3,398,108	+				-1.6
3,398,108	+				+0.6
3,398,109	-				+1.7
3,398,109	-				+0.1
3,398,109	-				-2.7
3,398,109	-				-1.4
3,398,109	-				+1.0
3,398,109	-				-0.2
3,398,109	-				+1.0
3,398,109	-				-0.5
3,398,113	+				+1.7
3,398,114	-				-1.2
3,398,114	-				-0.0
3,398,114	-				+0.0
3,398,116	+				+1.5
3,398,116	+				-0.6
3,398,116	+				-2.2
3,398,116	+				+0.5
3,398,116	+				-2.7
3,398,117	-				+0.2
3,398,139	+				-3.0
3,398,151	+				-2.4
3,398,151	+				+0.2
3,398,152	-				-0.2
3,398,152	-				+0.9
3,398,152	-				-0.8
3,398,162	+				-4.0
3,398,162	+				+2.4
3,398,162	+				+0.7
3,398,163	-				-0.9
3,398,163	-				+1.2
3,398,166	+				-2.0
3,398,166	+				+0.2
3,398,167	-				+1.3
3,398,170	+				+0.3
3,398,182	+				-2.2
3,398,182	+				-0.0
3,398,195	+				-0.9
3,398,195	+				+0.1
3,398,195	+				-0.3
3,398,195	+				+2.2
3,398,196	-				+0.5
3,398,196	-				+0.7
3,398,196	-				-0.7
3,398,196	-				-3.2
3,398,196	-				-1.7
3,398,196	-				+0.4
3,398,216	+				-0.2
3,398,216	+				+0.8
3,398,217	-				+2.4
3,398,293	-		EFB2_03246	0.23	+0.3
3,398,307	+		EFB2_03246	0.27	-2.4
3,398,329	+		EFB2_03246	0.32	+0.8
3,398,329	+		EFB2_03246	0.32	+0.5
3,398,329	+		EFB2_03246	0.32	-0.3
3,398,329	+		EFB2_03246	0.32	-1.3
3,398,329	+		EFB2_03246	0.32	-0.0
3,398,329	+		EFB2_03246	0.32	+0.7
3,398,329	+		EFB2_03246	0.32	-0.9
3,398,329	+		EFB2_03246	0.32	-0.9
3,398,330	-		EFB2_03246	0.32	+0.4
3,398,330	-		EFB2_03246	0.32	-0.6
3,398,330	-		EFB2_03246	0.32	-0.5
3,398,330	-		EFB2_03246	0.32	+1.2
3,398,330	-		EFB2_03246	0.32	-1.4
3,398,330	-		EFB2_03246	0.32	-0.2
3,398,330	-		EFB2_03246	0.32	-2.2
3,398,330	-		EFB2_03246	0.32	-0.6
3,398,338	+		EFB2_03246	0.34	-0.7
3,398,339	-		EFB2_03246	0.35	+1.2
3,398,339	-		EFB2_03246	0.35	-1.2
3,398,374	+		EFB2_03246	0.43	+1.0
3,398,374	+		EFB2_03246	0.43	-0.6
3,398,374	+		EFB2_03246	0.43	+1.5
3,398,374	+		EFB2_03246	0.43	-0.3
3,398,374	+		EFB2_03246	0.43	+0.9
3,398,374	+		EFB2_03246	0.43	+2.4
3,398,374	+		EFB2_03246	0.43	+0.4
3,398,374	+		EFB2_03246	0.43	-0.2
3,398,374	+		EFB2_03246	0.43	+2.2
3,398,374	+		EFB2_03246	0.43	-0.1
3,398,374	+		EFB2_03246	0.43	+0.4
3,398,374	+		EFB2_03246	0.43	+0.9
3,398,374	+		EFB2_03246	0.43	+0.2
3,398,374	+		EFB2_03246	0.43	-1.6
3,398,374	+		EFB2_03246	0.43	-0.5
3,398,374	+		EFB2_03246	0.43	+2.6
3,398,374	+		EFB2_03246	0.43	-0.7
3,398,375	-		EFB2_03246	0.43	-0.4
3,398,375	-		EFB2_03246	0.43	-2.8
3,398,375	-		EFB2_03246	0.43	-1.5
3,398,375	-		EFB2_03246	0.43	-2.7
3,398,375	-		EFB2_03246	0.43	+1.0
3,398,375	-		EFB2_03246	0.43	+0.6
3,398,375	-		EFB2_03246	0.43	+0.8
3,398,375	-		EFB2_03246	0.43	-1.0
3,398,375	-		EFB2_03246	0.43	+0.3
3,398,375	-		EFB2_03246	0.43	+2.2
3,398,375	-		EFB2_03246	0.43	-1.3
3,398,375	-		EFB2_03246	0.43	+1.0
3,398,375	-		EFB2_03246	0.43	+0.4
3,398,375	-		EFB2_03246	0.43	-1.2
3,398,375	-		EFB2_03246	0.43	-1.3
3,398,375	-		EFB2_03246	0.43	+0.7
3,398,375	-		EFB2_03246	0.43	+0.4
3,398,375	-		EFB2_03246	0.43	+2.0
3,398,375	-		EFB2_03246	0.43	-0.4
3,398,375	-		EFB2_03246	0.43	+0.5
3,398,375	-		EFB2_03246	0.43	-0.3
3,398,375	-		EFB2_03246	0.43	-1.6
3,398,375	-		EFB2_03246	0.43	+2.4
3,398,376	+		EFB2_03246	0.44	-0.9
3,398,376	+		EFB2_03246	0.44	-0.8
3,398,376	+		EFB2_03246	0.44	-0.4
3,398,376	+		EFB2_03246	0.44	+0.6
3,398,376	+		EFB2_03246	0.44	-1.6
3,398,376	+		EFB2_03246	0.44	+0.2
3,398,376	+		EFB2_03246	0.44	+0.3
3,398,376	+		EFB2_03246	0.44	+0.4
3,398,377	-		EFB2_03246	0.44	+0.9
3,398,377	-		EFB2_03246	0.44	-1.2
3,398,377	-		EFB2_03246	0.44	+1.8
3,398,377	-		EFB2_03246	0.44	+0.9
3,398,377	-		EFB2_03246	0.44	+0.4
3,398,377	-		EFB2_03246	0.44	-1.0
3,398,377	-		EFB2_03246	0.44	+0.0
3,398,377	-		EFB2_03246	0.44	+0.2
3,398,377	-		EFB2_03246	0.44	+1.9
3,398,402	+		EFB2_03246	0.50	+1.1
3,398,402	+		EFB2_03246	0.50	-0.0
3,398,402	+		EFB2_03246	0.50	-1.7
3,398,402	+		EFB2_03246	0.50	+1.3
3,398,402	+		EFB2_03246	0.50	-1.0
3,398,403	-		EFB2_03246	0.50	+0.2
3,398,403	-		EFB2_03246	0.50	+2.0
3,398,403	-		EFB2_03246	0.50	+2.2
3,398,457	+		EFB2_03246	0.63	+0.8
3,398,457	+		EFB2_03246	0.63	-1.0
3,398,457	+		EFB2_03246	0.63	+0.5
3,398,458	-		EFB2_03246	0.64	+1.7
3,398,458	-		EFB2_03246	0.64	-0.6
3,398,506	+		EFB2_03246	0.75	+0.8
3,398,536	-		EFB2_03246	0.82	+1.9
3,398,536	-		EFB2_03246	0.82	+0.7
3,398,536	-		EFB2_03246	0.82	+0.7
3,398,548	+		EFB2_03246	0.85	-0.4
3,398,548	+		EFB2_03246	0.85	-4.0
3,398,562	+		EFB2_03246	0.89	+0.2
3,398,563	-		EFB2_03246	0.89	+0.3
3,398,620	+				+1.9
3,398,620	+				-1.5
3,398,620	+				-1.5
3,398,620	+				-2.2
3,398,621	-				+1.2
3,398,621	-				-0.3
3,398,634	+				-0.3
3,398,635	-				+3.2
3,398,635	-				-0.6
3,398,639	+				-2.7
3,398,640	-				+0.2
3,398,640	-				-1.6
3,398,655	+				-1.6
3,398,656	-				-0.2
3,398,656	-				-0.1
3,398,671	+				-0.4
3,398,672	-				-0.8
3,398,672	-				-3.0
3,398,674	+				+0.3
3,398,674	+				+0.5
3,398,674	+				+1.1
3,398,675	-				+0.1
3,398,675	-				+0.5
3,398,675	-				-1.5
3,398,675	-				+0.9
3,398,709	+				+0.2
3,398,709	+				-1.2
3,398,730	+				+1.2
3,398,730	+				+0.7
3,398,731	-				-2.0
3,398,731	-				+0.4
3,398,731	-				+0.4
3,398,731	-				-0.2
3,398,758	+				+0.5
3,398,758	+				-1.3
3,398,758	+				-0.6
3,398,758	+				-2.4
3,398,758	+				+0.6
3,398,799	+				-0.4
3,398,799	+				+1.5
3,398,799	+				-0.7
3,398,800	-				-0.3
3,398,800	-				+0.4
3,398,837	-		EFB2_03247	0.17	-0.2
3,398,896	+		EFB2_03247	0.42	+1.8
3,398,896	+		EFB2_03247	0.42	+2.5
3,398,902	+		EFB2_03247	0.44	-0.3
3,398,902	+		EFB2_03247	0.44	-0.3
3,398,902	+		EFB2_03247	0.44	-1.6
3,398,902	+		EFB2_03247	0.44	-2.4
3,398,903	-		EFB2_03247	0.45	+0.2
3,398,903	-		EFB2_03247	0.45	-1.0
3,398,903	-		EFB2_03247	0.45	+1.7
3,398,922	-		EFB2_03247	0.53	-1.7
3,398,934	+		EFB2_03247	0.58	-1.7
3,398,935	-		EFB2_03247	0.59	+0.2
3,398,983	+		EFB2_03247	0.79	-1.4
3,398,984	-		EFB2_03247	0.79	+1.6
3,398,993	-		EFB2_03247	0.83	+0.4
3,399,010	-				-0.6
3,399,017	+				+0.2
3,399,017	+				+1.3
3,399,018	-				+0.5
3,399,018	-				+0.9
3,399,031	+				-1.6
3,399,071	+		EFB2_03248	0.15	+0.3
3,399,071	+		EFB2_03248	0.15	-1.9
3,399,071	+		EFB2_03248	0.15	-0.2
3,399,072	-		EFB2_03248	0.15	+1.4
3,399,072	-		EFB2_03248	0.15	-1.3
3,399,072	-		EFB2_03248	0.15	-0.2
3,399,072	-		EFB2_03248	0.15	-1.5
3,399,072	-		EFB2_03248	0.15	+2.0
3,399,109	+		EFB2_03248	0.35	-0.1
3,399,109	+		EFB2_03248	0.35	-1.4
3,399,109	+		EFB2_03248	0.35	+0.6
3,399,109	+		EFB2_03248	0.35	-0.2
3,399,110	-		EFB2_03248	0.35	-0.3
3,399,110	-		EFB2_03248	0.35	-0.4
3,399,110	-		EFB2_03248	0.35	-1.9
3,399,110	-		EFB2_03248	0.35	-1.0
3,399,110	-		EFB2_03248	0.35	+0.0
3,399,110	-		EFB2_03248	0.35	+1.2
3,399,110	-		EFB2_03248	0.35	+0.1
3,399,110	-		EFB2_03248	0.35	-0.2
3,399,110	-		EFB2_03248	0.35	+1.0
3,399,153	+		EFB2_03248	0.58	-0.6
3,399,153	+		EFB2_03248	0.58	-1.7
3,399,153	+		EFB2_03248	0.58	-1.6
3,399,153	+		EFB2_03248	0.58	-0.3
3,399,153	+		EFB2_03248	0.58	-0.3
3,399,153	+		EFB2_03248	0.58	+1.0
3,399,153	+		EFB2_03248	0.58	+0.6
3,399,153	+		EFB2_03248	0.58	+0.8
3,399,153	+		EFB2_03248	0.58	-2.2
3,399,153	+		EFB2_03248	0.58	-0.7
3,399,153	+		EFB2_03248	0.58	+0.4
3,399,154	-		EFB2_03248	0.59	+0.3
3,399,154	-		EFB2_03248	0.59	-0.2
3,399,154	-		EFB2_03248	0.59	-3.1
3,399,154	-		EFB2_03248	0.59	-0.3
3,399,154	-		EFB2_03248	0.59	+0.3
3,399,154	-		EFB2_03248	0.59	-2.2
3,399,154	-		EFB2_03248	0.59	+0.9
3,399,154	-		EFB2_03248	0.59	+0.6
3,399,154	-		EFB2_03248	0.59	-1.7
3,399,154	-		EFB2_03248	0.59	-1.2
3,399,162	+		EFB2_03248	0.63	+0.4
3,399,162	+		EFB2_03248	0.63	-1.2
3,399,162	+		EFB2_03248	0.63	-2.6
3,399,163	-		EFB2_03248	0.63	+0.8
3,399,169	+		EFB2_03248	0.67	+1.5
3,399,170	-		EFB2_03248	0.67	-0.4
3,399,177	+		EFB2_03248	0.71	+0.2
3,399,221	+				+0.6
3,399,241	+				+2.8
3,399,241	+				+0.5
3,399,241	+				+2.0
3,399,242	-				-2.2
3,399,242	-				-2.6
3,399,298	-				-2.9
3,399,303	+				-0.2
3,399,312	-				+0.6
3,399,312	-				+2.5
3,399,342	-				-1.5
3,399,342	-				-0.6
3,399,342	-				-2.2
3,399,353	+				-2.4
3,399,354	-				+0.1
3,399,356	+				+0.6
3,399,356	+				-1.0
3,399,357	-				-0.4
3,399,385	+				+0.3
3,399,385	+				+1.0
3,399,385	+				-0.2
3,399,385	+				-1.4
3,399,385	+				-2.5
3,399,385	+				-2.2
3,399,385	+				+1.0
3,399,386	-				-1.2
3,399,386	-				+2.0
3,399,386	-				-1.2
3,399,386	-				-0.8
3,399,386	-				+2.0
3,399,386	-				+0.5
3,399,388	+				-0.2
3,399,389	-				+1.2
3,399,404	+				+1.4
3,399,404	+				-0.1
3,399,404	+				+0.1
3,399,404	+				-0.1
3,399,404	+				-0.1
3,399,404	+				-0.2
3,399,405	-				-1.2
3,399,405	-				-0.9
3,399,405	-				-0.4
3,399,405	-				+0.4
3,399,433	+				+0.2
3,399,440	+				-2.7
3,399,440	+				-2.5
3,399,440	+				+0.4
3,399,441	-				-1.4
3,399,441	-				-2.0
3,399,441	-				+0.0
3,399,441	-				+2.4
3,399,441	-				+0.4
3,399,441	-				-0.0
3,399,464	+				+1.9
3,399,465	-				-0.8
3,399,532	+				+0.3
3,399,532	+				+0.7
3,399,532	+				+1.5
3,399,533	-				-1.3
3,399,533	-				+0.7
3,399,533	-				+0.9
3,399,560	+				-0.6
3,399,560	+				+0.4
3,399,561	-				-2.1
3,399,561	-				-2.1
3,399,574	+				-0.5
3,399,575	-				-1.5
3,399,575	-				-0.4
3,399,575	-				+0.5
3,399,575	-				-1.8
3,399,581	+				+2.3
3,399,582	-				-0.2
3,399,607	-				+1.6
3,399,607	-				+0.8
3,399,644	+		EFB2_03249	0.11	+0.5
3,399,644	+		EFB2_03249	0.11	+0.2
3,399,644	+		EFB2_03249	0.11	+0.3
3,399,644	+		EFB2_03249	0.11	-0.4
3,399,644	+		EFB2_03249	0.11	-0.9
3,399,644	+		EFB2_03249	0.11	-0.1
3,399,644	+		EFB2_03249	0.11	-0.4
3,399,645	-		EFB2_03249	0.11	-1.3
3,399,645	-		EFB2_03249	0.11	+0.0
3,399,645	-		EFB2_03249	0.11	+0.4
3,399,645	-		EFB2_03249	0.11	-3.6
3,399,645	-		EFB2_03249	0.11	-0.6
3,399,645	-		EFB2_03249	0.11	+1.2
3,399,645	-		EFB2_03249	0.11	-0.0
3,399,645	-		EFB2_03249	0.11	+1.2
3,399,645	-		EFB2_03249	0.11	+0.4
3,399,645	-		EFB2_03249	0.11	+0.6
3,399,655	+		EFB2_03249	0.11	-1.0
3,399,655	+		EFB2_03249	0.11	-0.2
3,399,656	-		EFB2_03249	0.11	-0.0
3,399,656	-		EFB2_03249	0.11	-0.0
3,399,719	+		EFB2_03249	0.14	-0.8
3,399,719	+		EFB2_03249	0.14	-2.8
3,399,719	+		EFB2_03249	0.14	+0.8
3,399,720	-		EFB2_03249	0.14	-0.5
3,399,720	-		EFB2_03249	0.14	-0.4
3,399,720	-		EFB2_03249	0.14	+0.4
3,399,720	-		EFB2_03249	0.14	+0.6
3,399,720	-		EFB2_03249	0.14	-0.3
3,399,761	+		EFB2_03249	0.16	-2.1
3,399,761	+		EFB2_03249	0.16	-1.0
3,399,761	+		EFB2_03249	0.16	-2.5
3,399,761	+		EFB2_03249	0.16	-0.3
3,399,761	+		EFB2_03249	0.16	-0.9
3,399,761	+		EFB2_03249	0.16	+0.5
3,399,761	+		EFB2_03249	0.16	-1.1
3,399,761	+		EFB2_03249	0.16	+1.3
3,399,761	+		EFB2_03249	0.16	+0.5
3,399,761	+		EFB2_03249	0.16	-0.3
3,399,761	+		EFB2_03249	0.16	+1.0
3,399,761	+		EFB2_03249	0.16	-1.5
3,399,762	-		EFB2_03249	0.16	-0.8
3,399,762	-		EFB2_03249	0.16	-0.7
3,399,762	-		EFB2_03249	0.16	-0.1
3,399,762	-		EFB2_03249	0.16	+1.6
3,399,762	-		EFB2_03249	0.16	-0.8
3,399,827	+		EFB2_03249	0.18	-0.5
3,399,827	+		EFB2_03249	0.18	-0.5
3,399,827	+		EFB2_03249	0.18	+0.6
3,399,828	-		EFB2_03249	0.18	+0.0
3,399,853	+		EFB2_03249	0.19	-3.9
3,399,895	+		EFB2_03249	0.21	+0.8
3,399,895	+		EFB2_03249	0.21	+0.8
3,399,895	+		EFB2_03249	0.21	+0.1
3,399,895	+		EFB2_03249	0.21	-1.2
3,399,896	-		EFB2_03249	0.21	-0.5
3,399,896	-		EFB2_03249	0.21	-2.2
3,399,899	+		EFB2_03249	0.21	-1.8
3,399,899	+		EFB2_03249	0.21	-1.0
3,399,899	+		EFB2_03249	0.21	-0.6
3,399,900	-		EFB2_03249	0.21	-0.8
3,399,900	-		EFB2_03249	0.21	-0.0
3,399,900	-		EFB2_03249	0.21	+0.6
3,399,900	-		EFB2_03249	0.21	-2.8
3,399,900	-		EFB2_03249	0.21	-0.5
3,399,900	-		EFB2_03249	0.21	-0.2
3,399,900	-		EFB2_03249	0.21	+0.4
3,399,900	-		EFB2_03249	0.21	-0.7
3,399,900	-		EFB2_03249	0.21	+1.2
3,399,920	-		EFB2_03249	0.22	+0.0
3,399,967	+		EFB2_03249	0.24	+0.5
3,399,967	+		EFB2_03249	0.24	-0.4
3,399,967	+		EFB2_03249	0.24	+0.2
3,399,968	-		EFB2_03249	0.24	+0.4
3,399,968	-		EFB2_03249	0.24	+1.6
3,399,968	-		EFB2_03249	0.24	-0.6
3,399,968	-		EFB2_03249	0.24	-1.0
3,399,968	-		EFB2_03249	0.24	-0.4
3,400,006	+		EFB2_03249	0.26	+0.6
3,400,006	+		EFB2_03249	0.26	-1.3
3,400,006	+		EFB2_03249	0.26	-0.2
3,400,006	+		EFB2_03249	0.26	+2.2
3,400,006	+		EFB2_03249	0.26	+0.4
3,400,006	+		EFB2_03249	0.26	+1.2
3,400,006	+		EFB2_03249	0.26	+0.6
3,400,006	+		EFB2_03249	0.26	-1.5
3,400,006	+		EFB2_03249	0.26	+0.1
3,400,006	+		EFB2_03249	0.26	-1.3
3,400,006	+		EFB2_03249	0.26	+0.3
3,400,006	+		EFB2_03249	0.26	+0.5
3,400,006	+		EFB2_03249	0.26	+1.5
3,400,007	-		EFB2_03249	0.26	+0.2
3,400,007	-		EFB2_03249	0.26	-0.0
3,400,007	-		EFB2_03249	0.26	-1.0
3,400,007	-		EFB2_03249	0.26	-0.8
3,400,007	-		EFB2_03249	0.26	-0.2
3,400,007	-		EFB2_03249	0.26	-0.9
3,400,007	-		EFB2_03249	0.26	-2.5
3,400,007	-		EFB2_03249	0.26	-2.0
3,400,007	-		EFB2_03249	0.26	-0.3
3,400,007	-		EFB2_03249	0.26	-2.1
3,400,007	-		EFB2_03249	0.26	+1.8
3,400,007	-		EFB2_03249	0.26	+0.7
3,400,007	-		EFB2_03249	0.26	-0.2
3,400,007	-		EFB2_03249	0.26	-0.4
3,400,007	-		EFB2_03249	0.26	-2.6
3,400,007	-		EFB2_03249	0.26	-0.6
3,400,007	-		EFB2_03249	0.26	-1.1
3,400,007	-		EFB2_03249	0.26	+1.1
3,400,007	-		EFB2_03249	0.26	-0.5
3,400,007	-		EFB2_03249	0.26	-0.1
3,400,007	-		EFB2_03249	0.26	-0.9
3,400,007	-		EFB2_03249	0.26	-0.4
3,400,007	-		EFB2_03249	0.26	-0.2
3,400,007	-		EFB2_03249	0.26	-0.9
3,400,007	-		EFB2_03249	0.26	-0.3
3,400,007	-		EFB2_03249	0.26	-0.7
3,400,007	-		EFB2_03249	0.26	-0.7
3,400,007	-		EFB2_03249	0.26	-0.5
3,400,138	+		EFB2_03249	0.31	+0.5
3,400,157	+		EFB2_03249	0.32	+1.1
3,400,158	-		EFB2_03249	0.32	-3.2
3,400,210	+		EFB2_03249	0.34	+0.4
3,400,210	+		EFB2_03249	0.34	-2.6
3,400,211	-		EFB2_03249	0.34	-0.8
3,400,211	-		EFB2_03249	0.34	-0.0
3,400,211	-		EFB2_03249	0.34	-2.0
3,400,211	-		EFB2_03249	0.34	-0.6
3,400,211	-		EFB2_03249	0.34	-0.1
3,400,221	-		EFB2_03249	0.35	-0.3
3,400,221	-		EFB2_03249	0.35	+0.6