Strain Fitness in Escherichia fergusonii Becca around EFB2_02592

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,742,354	+		EFB2_02591	0.40	+1.8
2,742,354	+		EFB2_02591	0.40	+1.6
2,742,354	+		EFB2_02591	0.40	+1.4
2,742,355	-		EFB2_02591	0.40	+1.4
2,742,355	-		EFB2_02591	0.40	-1.4
2,742,355	-		EFB2_02591	0.40	-0.4
2,742,357	+		EFB2_02591	0.41	+0.5
2,742,357	+		EFB2_02591	0.41	+1.3
2,742,357	+		EFB2_02591	0.41	-1.1
2,742,357	+		EFB2_02591	0.41	+0.3
2,742,358	-		EFB2_02591	0.41	+2.4
2,742,367	+		EFB2_02591	0.42	+1.0
2,742,368	-		EFB2_02591	0.42	+0.5
2,742,391	+		EFB2_02591	0.45	-0.2
2,742,391	+		EFB2_02591	0.45	-2.5
2,742,392	-		EFB2_02591	0.45	-1.5
2,742,400	+		EFB2_02591	0.46	+1.3
2,742,401	-		EFB2_02591	0.46	+1.0
2,742,411	+		EFB2_02591	0.47	+0.6
2,742,411	+		EFB2_02591	0.47	+2.6
2,742,412	-		EFB2_02591	0.47	-1.6
2,742,438	+		EFB2_02591	0.50	+1.9
2,742,438	+		EFB2_02591	0.50	-0.8
2,742,439	-		EFB2_02591	0.51	-1.9
2,742,451	-		EFB2_02591	0.52	+0.1
2,742,542	+		EFB2_02591	0.63	-1.0
2,742,542	+		EFB2_02591	0.63	+0.6
2,742,542	+		EFB2_02591	0.63	+1.0
2,742,542	+		EFB2_02591	0.63	+1.5
2,742,542	+		EFB2_02591	0.63	-1.9
2,742,543	-		EFB2_02591	0.63	+0.6
2,742,543	-		EFB2_02591	0.63	+1.0
2,742,543	-		EFB2_02591	0.63	-1.6
2,742,543	-		EFB2_02591	0.63	+0.3
2,742,564	+		EFB2_02591	0.66	-2.4
2,742,577	+		EFB2_02591	0.68	+3.0
2,742,592	+		EFB2_02591	0.69	+0.7
2,742,592	+		EFB2_02591	0.69	+1.6
2,742,593	-		EFB2_02591	0.69	-0.2
2,742,593	-		EFB2_02591	0.69	+1.6
2,742,606	+		EFB2_02591	0.71	+2.4
2,742,606	+		EFB2_02591	0.71	-3.2
2,742,607	-		EFB2_02591	0.71	-2.2
2,742,607	-		EFB2_02591	0.71	+1.9
2,742,607	-		EFB2_02591	0.71	-2.6
2,742,613	+		EFB2_02591	0.72	-0.4
2,742,628	-		EFB2_02591	0.74	+0.8
2,742,661	+		EFB2_02591	0.78	-0.8
2,742,725	+		EFB2_02591	0.86	-1.3
2,742,726	-		EFB2_02591	0.86	+0.2
2,742,726	-		EFB2_02591	0.86	+0.4
2,742,751	+		EFB2_02591	0.89	+0.4
2,742,751	+		EFB2_02591	0.89	+0.6
2,742,752	-		EFB2_02591	0.89	+2.3
2,742,752	-		EFB2_02591	0.89	+2.4
2,742,757	+		EFB2_02591	0.90	+0.2
2,742,758	-		EFB2_02591	0.90	+0.1
2,742,773	+				-2.3
2,742,839	+				+0.1
2,742,839	+				+2.3
2,742,839	+				+0.4
2,742,840	-				-1.3
2,742,840	-				-2.0
2,742,844	+				-2.1
2,742,845	-				+1.3
2,742,846	+				-1.6
2,742,847	-				-0.6
2,742,847	-				+0.9
2,742,891	+				+2.6
2,742,892	-				-1.6
2,742,902	+				+2.9
2,742,902	+				+1.4
2,742,902	+				+1.1
2,742,902	+				+1.2
2,742,902	+				+1.0
2,742,902	+				+0.6
2,742,902	+				+0.5
2,742,902	+				+1.2
2,742,902	+				-1.1
2,742,902	+				-1.5
2,742,902	+				+0.5
2,742,902	+				+0.8
2,742,902	+				+2.0
2,742,902	+				-1.7
2,742,903	-				-0.8
2,742,903	-				-0.2
2,742,903	-				-0.1
2,742,903	-				-0.2
2,742,903	-				+4.4
2,742,903	-				+0.1
2,742,903	-				+1.4
2,742,903	-				+1.3
2,742,903	-				-2.2
2,742,903	-				+0.1
2,742,903	-				+0.7
2,742,903	-				+1.0
2,742,965	+				+0.7
2,742,970	+				+1.5
2,742,970	+				-2.1
2,742,970	+				+0.4
2,742,970	+				-1.9
2,742,970	+				+1.8
2,742,971	-				+0.8
2,742,971	-				+1.1
2,742,971	-				-1.8
2,743,024	+				+0.2
2,743,024	+				+0.7
2,743,025	-				+1.0
2,743,025	-				-0.9
2,743,028	+				-0.7
2,743,028	+				-1.3
2,743,029	-				+0.7
2,743,075	+				+0.5
2,743,075	+				+0.8
2,743,076	-				+0.7
2,743,076	-				-0.7
2,743,076	-				-0.6
2,743,087	-				-2.1
2,743,107	-				+1.6
2,743,118	+				+0.8
2,743,118	+				+1.2
2,743,118	+				+1.4
2,743,119	-				-2.3
2,743,119	-				+0.8
2,743,193	+				+1.3
2,743,193	+				+1.5
2,743,194	-				+1.5
2,743,194	-				+0.4
2,743,194	-				+1.9
2,743,199	+				-1.6
2,743,199	+				-1.3
2,743,199	+				+0.4
2,743,199	+				+0.7
2,743,200	-				+0.9
2,743,200	-				+0.6
2,743,200	-				+0.9
2,743,203	+				-1.2
2,743,203	+				-0.2
2,743,203	+				-1.9
2,743,203	+				-0.6
2,743,203	+				+0.1
2,743,203	+				-0.5
2,743,204	-				+0.7
2,743,204	-				-0.2
2,743,204	-				-0.6
2,743,204	-				-1.9
2,743,204	-				+1.8
2,743,232	+				+2.0
2,743,232	+				-0.1
2,743,236	+				+0.5
2,743,247	-				-0.1
2,743,249	+				+0.3
2,743,252	+				+0.7
2,743,268	-				-1.4
2,743,293	+				-0.4
2,743,293	+				+0.5
2,743,293	+				+1.1
2,743,293	+				+2.4
2,743,294	-				-0.8
2,743,294	-				-1.1
2,743,294	-				+0.3
2,743,294	-				-1.6
2,743,294	-				-0.4
2,743,294	-				+0.6
2,743,312	+				+0.1
2,743,313	-				+0.7
2,743,322	+				-2.5
2,743,326	+				+2.4
2,743,326	+				+1.0
2,743,326	+				+0.8
2,743,327	-				-1.3
2,743,342	-				+0.9
2,743,364	+				-0.0
2,743,364	+				+1.4
2,743,364	+				+1.5
2,743,364	+				-0.5
2,743,364	+				-0.3
2,743,364	+				-0.4
2,743,364	+				-0.2
2,743,364	+				+0.7
2,743,364	+				+0.1
2,743,364	+				+1.2
2,743,365	-				+1.0
2,743,365	-				+1.3
2,743,365	-				-0.3
2,743,453	+		EFB2_02592	0.19	-0.4
2,743,453	+		EFB2_02592	0.19	+2.0
2,743,504	+		EFB2_02592	0.29	-2.4
2,743,504	+		EFB2_02592	0.29	+0.8
2,743,504	+		EFB2_02592	0.29	+0.7
2,743,504	+		EFB2_02592	0.29	-0.6
2,743,504	+		EFB2_02592	0.29	-0.6
2,743,504	+		EFB2_02592	0.29	-0.1
2,743,504	+		EFB2_02592	0.29	+1.1
2,743,504	+		EFB2_02592	0.29	-0.4
2,743,504	+		EFB2_02592	0.29	-1.6
2,743,504	+		EFB2_02592	0.29	-1.9
2,743,504	+		EFB2_02592	0.29	-0.0
2,743,504	+		EFB2_02592	0.29	-0.8
2,743,504	+		EFB2_02592	0.29	-0.5
2,743,505	-		EFB2_02592	0.29	+1.0
2,743,505	-		EFB2_02592	0.29	+0.5
2,743,505	-		EFB2_02592	0.29	-0.8
2,743,505	-		EFB2_02592	0.29	-0.8
2,743,538	+		EFB2_02592	0.36	+0.9
2,743,538	+		EFB2_02592	0.36	+1.1
2,743,575	+		EFB2_02592	0.43	-1.1
2,743,575	+		EFB2_02592	0.43	-2.4
2,743,576	-		EFB2_02592	0.43	+1.8
2,743,576	-		EFB2_02592	0.43	-1.6
2,743,576	-		EFB2_02592	0.43	+0.4
2,743,581	+		EFB2_02592	0.44	+0.1
2,743,581	+		EFB2_02592	0.44	+1.7
2,743,581	+		EFB2_02592	0.44	+0.3
2,743,581	+		EFB2_02592	0.44	-1.1
2,743,582	-		EFB2_02592	0.44	+0.5
2,743,582	-		EFB2_02592	0.44	-2.6
2,743,667	+		EFB2_02592	0.61	-1.4
2,743,667	+		EFB2_02592	0.61	-2.3
2,743,667	+		EFB2_02592	0.61	+1.5
2,743,667	+		EFB2_02592	0.61	+0.1
2,743,667	+		EFB2_02592	0.61	-1.9
2,743,675	+		EFB2_02592	0.62	+1.2
2,743,697	+		EFB2_02592	0.66	+1.7
2,743,697	+		EFB2_02592	0.66	-0.8
2,743,697	+		EFB2_02592	0.66	+1.4
2,743,780	-		EFB2_02592	0.83	+0.5
2,743,855	+				+1.9
2,743,855	+				-0.1
2,743,905	+				-1.2
2,743,906	-				-0.4
2,743,909	+				+1.6
2,743,956	-				-1.5
2,743,956	-				-3.0
2,743,956	-				-1.1
2,743,960	-				-2.3
2,743,965	+				+1.7
2,743,965	+				-2.5
2,743,965	+				-2.6
2,743,966	-				-0.5
2,743,966	-				-0.7
2,744,004	+				-1.2
2,744,004	+				-1.8
2,744,004	+				+2.0
2,744,004	+				-2.8
2,744,004	+				+0.1
2,744,005	-				+2.3
2,744,005	-				+1.2
2,744,005	-				+0.8
2,744,005	-				-2.8
2,744,005	-				-0.4
2,744,039	+				+0.3
2,744,039	+				-1.6
2,744,046	+				-2.0
2,744,063	+				-1.2
2,744,063	+				-2.0
2,744,063	+				-0.2
2,744,063	+				-1.2
2,744,063	+				-0.9
2,744,063	+				-1.1
2,744,063	+				-1.2
2,744,063	+				-0.9
2,744,063	+				-0.4
2,744,063	+				+0.8
2,744,063	+				+2.4
2,744,064	-				+2.4
2,744,084	+				+0.1
2,744,084	+				-1.3
2,744,084	+				+0.8
2,744,084	+				+0.8
2,744,084	+				+0.8
2,744,084	+				-0.6
2,744,084	+				-1.3
2,744,086	+				-0.2
2,744,086	+				-0.6
2,744,192	+		EFB2_02593	0.17	+1.4
2,744,192	+		EFB2_02593	0.17	-0.8
2,744,195	+		EFB2_02593	0.17	+1.4
2,744,195	+		EFB2_02593	0.17	+0.1
2,744,268	+		EFB2_02593	0.27	-1.3
2,744,291	+		EFB2_02593	0.30	+0.4
2,744,291	+		EFB2_02593	0.30	-0.8
2,744,291	+		EFB2_02593	0.30	-0.4
2,744,298	+		EFB2_02593	0.31	-0.9
2,744,298	+		EFB2_02593	0.31	-1.5
2,744,300	+		EFB2_02593	0.31	+0.1
2,744,344	+		EFB2_02593	0.37	-0.6
2,744,344	+		EFB2_02593	0.37	-1.3
2,744,425	+		EFB2_02593	0.48	+0.4
2,744,425	+		EFB2_02593	0.48	-1.1
2,744,425	+		EFB2_02593	0.48	+0.1
2,744,425	+		EFB2_02593	0.48	-0.6
2,744,586	+		EFB2_02593	0.69	-1.4
2,744,586	+		EFB2_02593	0.69	-0.4
2,744,670	+		EFB2_02593	0.80	-0.2
2,744,670	+		EFB2_02593	0.80	+0.4
2,744,670	+		EFB2_02593	0.80	-1.1
2,744,670	+		EFB2_02593	0.80	-1.4
2,744,670	+		EFB2_02593	0.80	-0.6
2,744,670	+		EFB2_02593	0.80	-0.6
2,744,747	+				+0.4
2,744,747	+				-0.6
2,744,747	+				+0.1
2,744,747	+				+0.1
2,744,747	+				+0.1
2,744,747	+				-0.6
2,744,751	+				+0.8
2,744,751	+				+0.1
2,744,751	+				-0.8
2,744,751	+				-1.2
2,744,751	+				-0.2
2,744,751	+				-0.4
2,744,768	+				+1.0
2,744,768	+				-1.1
2,744,827	+				-0.4
2,744,827	+				-0.1
2,744,827	+				-1.0
2,744,835	+				-2.2
2,744,835	+				-0.7
2,744,848	+				+0.4
2,744,848	+				-1.9
2,744,848	+				-1.1
2,744,848	+				-1.3
2,744,848	+				-1.6
2,744,848	+				-2.3
2,744,848	+				+1.2