Strain Fitness in Escherichia fergusonii Becca around EFB2_02398

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,536,723	-				+2.5
2,536,795	+		EFB2_02397	0.11	-1.0
2,536,795	+		EFB2_02397	0.11	+0.2
2,536,795	+		EFB2_02397	0.11	-0.2
2,536,796	-		EFB2_02397	0.11	+0.7
2,536,864	+		EFB2_02397	0.19	-1.4
2,536,864	+		EFB2_02397	0.19	+2.5
2,536,864	+		EFB2_02397	0.19	-1.8
2,536,864	+		EFB2_02397	0.19	+0.5
2,536,864	+		EFB2_02397	0.19	+0.9
2,536,864	+		EFB2_02397	0.19	-2.0
2,536,865	-		EFB2_02397	0.19	-0.3
2,536,865	-		EFB2_02397	0.19	+1.5
2,536,865	-		EFB2_02397	0.19	+0.9
2,536,865	-		EFB2_02397	0.19	+2.1
2,536,865	-		EFB2_02397	0.19	-0.5
2,536,897	+		EFB2_02397	0.23	+0.5
2,536,897	+		EFB2_02397	0.23	-0.6
2,536,897	+		EFB2_02397	0.23	-0.8
2,536,897	+		EFB2_02397	0.23	+2.3
2,536,897	+		EFB2_02397	0.23	+0.5
2,536,897	+		EFB2_02397	0.23	+0.7
2,536,897	+		EFB2_02397	0.23	-2.3
2,536,897	+		EFB2_02397	0.23	-0.8
2,536,898	-		EFB2_02397	0.23	-1.5
2,536,898	-		EFB2_02397	0.23	+0.9
2,536,898	-		EFB2_02397	0.23	-0.1
2,536,902	-		EFB2_02397	0.23	+1.3
2,536,919	+		EFB2_02397	0.25	-1.6
2,536,919	+		EFB2_02397	0.25	-1.6
2,536,920	-		EFB2_02397	0.25	-0.7
2,536,920	-		EFB2_02397	0.25	-0.3
2,536,920	-		EFB2_02397	0.25	-2.2
2,536,991	+		EFB2_02397	0.33	-2.7
2,537,009	+		EFB2_02397	0.35	-2.3
2,537,027	+		EFB2_02397	0.37	+2.3
2,537,033	-		EFB2_02397	0.38	+1.3
2,537,068	+		EFB2_02397	0.42	-1.0
2,537,068	+		EFB2_02397	0.42	+0.4
2,537,068	+		EFB2_02397	0.42	+0.7
2,537,069	-		EFB2_02397	0.42	+2.2
2,537,198	+		EFB2_02397	0.56	-0.7
2,537,198	+		EFB2_02397	0.56	-1.2
2,537,199	-		EFB2_02397	0.56	-1.4
2,537,234	+		EFB2_02397	0.60	+0.8
2,537,245	+		EFB2_02397	0.62	+0.5
2,537,245	+		EFB2_02397	0.62	-1.0
2,537,246	-		EFB2_02397	0.62	+1.1
2,537,246	-		EFB2_02397	0.62	-0.1
2,537,246	-		EFB2_02397	0.62	+1.3
2,537,310	+		EFB2_02397	0.69	+2.7
2,537,310	+		EFB2_02397	0.69	-0.1
2,537,310	+		EFB2_02397	0.69	+2.1
2,537,310	+		EFB2_02397	0.69	-0.5
2,537,310	+		EFB2_02397	0.69	+1.7
2,537,310	+		EFB2_02397	0.69	-0.3
2,537,310	+		EFB2_02397	0.69	+1.1
2,537,310	+		EFB2_02397	0.69	+1.6
2,537,310	+		EFB2_02397	0.69	-2.4
2,537,310	+		EFB2_02397	0.69	+1.1
2,537,310	+		EFB2_02397	0.69	+0.7
2,537,311	-		EFB2_02397	0.69	-1.4
2,537,311	-		EFB2_02397	0.69	-1.9
2,537,311	-		EFB2_02397	0.69	+1.5
2,537,311	-		EFB2_02397	0.69	+1.5
2,537,311	-		EFB2_02397	0.69	-1.0
2,537,318	+		EFB2_02397	0.70	+1.0
2,537,319	-		EFB2_02397	0.70	+0.2
2,537,340	+		EFB2_02397	0.72	-1.0
2,537,340	+		EFB2_02397	0.72	+2.2
2,537,341	-		EFB2_02397	0.72	-2.6
2,537,441	+		EFB2_02397	0.83	-0.5
2,537,441	+		EFB2_02397	0.83	-0.0
2,537,441	+		EFB2_02397	0.83	+0.2
2,537,552	+				+0.5
2,537,562	-				+1.6
2,537,627	-				+0.7
2,537,639	-				-2.5
2,537,639	-				-1.3
2,537,660	+				+2.1
2,537,660	+				-0.5
2,537,678	+				-2.3
2,537,678	+				+1.5
2,537,678	+				+1.7
2,537,679	-				+0.9
2,537,683	+				-0.7
2,537,683	+				+0.2
2,537,683	+				+2.9
2,537,683	+				-2.2
2,537,683	+				-0.7
2,537,683	+				+0.5
2,537,683	+				-0.7
2,537,683	+				-1.9
2,537,690	+				-0.1
2,537,709	-				-0.5
2,537,711	-				-0.3
2,537,717	+				-0.3
2,537,717	+				-2.1
2,537,717	+				-0.3
2,537,760	+				-0.7
2,537,760	+				-2.3
2,537,860	+		EFB2_02398	0.11	-0.8
2,537,860	+		EFB2_02398	0.11	+0.9
2,537,866	+		EFB2_02398	0.12	+5.1
2,537,981	+		EFB2_02398	0.21	+1.5
2,538,103	+		EFB2_02398	0.31	+2.7
2,538,190	+		EFB2_02398	0.38	+0.4
2,538,208	+		EFB2_02398	0.40	+1.3
2,538,208	+		EFB2_02398	0.40	+2.5
2,538,208	+		EFB2_02398	0.40	-0.4
2,538,208	+		EFB2_02398	0.40	+3.5
2,538,208	+		EFB2_02398	0.40	+1.9
2,538,208	+		EFB2_02398	0.40	+0.2
2,538,208	+		EFB2_02398	0.40	-2.2
2,538,208	+		EFB2_02398	0.40	-0.5
2,538,209	-		EFB2_02398	0.40	-0.1
2,538,213	+		EFB2_02398	0.40	+4.1
2,538,213	+		EFB2_02398	0.40	+0.2
2,538,213	+		EFB2_02398	0.40	-1.5
2,538,213	+		EFB2_02398	0.40	-2.5
2,538,213	+		EFB2_02398	0.40	+0.8
2,538,213	+		EFB2_02398	0.40	-0.5
2,538,213	+		EFB2_02398	0.40	+2.1
2,538,213	+		EFB2_02398	0.40	+1.5
2,538,213	+		EFB2_02398	0.40	-0.5
2,538,213	+		EFB2_02398	0.40	-1.9
2,538,213	+		EFB2_02398	0.40	-2.0
2,538,213	+		EFB2_02398	0.40	+2.0
2,538,213	+		EFB2_02398	0.40	-0.7
2,538,213	+		EFB2_02398	0.40	-0.3
2,538,213	+		EFB2_02398	0.40	-0.5
2,538,213	+		EFB2_02398	0.40	-0.6
2,538,213	+		EFB2_02398	0.40	+2.5
2,538,214	-		EFB2_02398	0.40	-1.0
2,538,230	+		EFB2_02398	0.42	+1.1
2,538,230	+		EFB2_02398	0.42	-0.6
2,538,230	+		EFB2_02398	0.42	-0.5
2,538,231	-		EFB2_02398	0.42	-1.8
2,538,240	+		EFB2_02398	0.42	-0.1
2,538,240	+		EFB2_02398	0.42	+0.5
2,538,240	+		EFB2_02398	0.42	-2.0
2,538,293	+		EFB2_02398	0.47	+1.0
2,538,293	+		EFB2_02398	0.47	-1.0
2,538,293	+		EFB2_02398	0.47	+1.0
2,538,294	-		EFB2_02398	0.47	+2.5
2,538,295	+		EFB2_02398	0.47	-0.2
2,538,295	+		EFB2_02398	0.47	+2.1
2,538,295	+		EFB2_02398	0.47	+0.8
2,538,295	+		EFB2_02398	0.47	+0.2
2,538,295	+		EFB2_02398	0.47	+2.5
2,538,307	+		EFB2_02398	0.48	+2.8
2,538,307	+		EFB2_02398	0.48	+1.2
2,538,426	+		EFB2_02398	0.58	+1.1
2,538,426	+		EFB2_02398	0.58	+0.8
2,538,442	+		EFB2_02398	0.59	+1.3
2,538,456	+		EFB2_02398	0.60	+1.0
2,538,541	+		EFB2_02398	0.67	+0.5
2,538,541	+		EFB2_02398	0.67	-1.2
2,538,541	+		EFB2_02398	0.67	-1.8
2,538,591	+		EFB2_02398	0.71	-1.0
2,538,591	+		EFB2_02398	0.71	+2.5
2,538,591	+		EFB2_02398	0.71	+2.0
2,538,592	-		EFB2_02398	0.71	-0.5
2,538,592	-		EFB2_02398	0.71	-0.3
2,538,648	+		EFB2_02398	0.76	-1.6
2,538,667	+		EFB2_02398	0.77	+2.0
2,538,667	+		EFB2_02398	0.77	+0.2
2,538,753	+		EFB2_02398	0.84	-2.3
2,538,753	+		EFB2_02398	0.84	-1.1
2,538,757	+		EFB2_02398	0.85	-1.1
2,538,757	+		EFB2_02398	0.85	-1.9
2,538,758	-		EFB2_02398	0.85	+1.3
2,538,784	+		EFB2_02398	0.87	-2.2
2,538,784	+		EFB2_02398	0.87	-1.3
2,538,784	+		EFB2_02398	0.87	-0.1
2,538,820	+		EFB2_02398	0.90	-1.4
2,538,821	+		EFB2_02398	0.90	+0.2
2,538,821	+		EFB2_02398	0.90	+0.9
2,538,821	+		EFB2_02398	0.90	+1.7
2,538,821	+		EFB2_02398	0.90	-1.9
2,538,821	+		EFB2_02398	0.90	+0.1
2,538,821	+		EFB2_02398	0.90	+0.9
2,538,821	+		EFB2_02398	0.90	+1.0
2,538,823	+				-1.6
2,538,824	-				-1.1
2,538,824	-				+0.5
2,538,905	+				+0.2
2,538,905	+				-0.5
2,538,905	+				+1.3
2,538,905	+				-0.3
2,538,905	+				+2.5
2,538,905	+				+2.0
2,538,905	+				-1.6
2,538,905	+				+2.5
2,538,906	-				+1.6
2,538,906	-				+0.9
2,538,906	-				+0.7
2,538,906	-				+0.9
2,538,906	-				+0.7
2,538,951	+				+1.5
2,538,961	-				-1.8
2,539,000	+				+1.5
2,539,000	+				+0.9
2,539,000	+				+4.3
2,539,000	+				-0.8
2,539,000	+				-0.1
2,539,005	+				+0.2
2,539,005	+				-1.8
2,539,005	+				-1.4
2,539,005	+				+0.6
2,539,006	-				-2.2
2,539,019	+				+0.5
2,539,020	-				-2.0
2,539,023	+				-1.1
2,539,024	-				-0.3
2,539,036	+				-1.9
2,539,036	+				+1.5
2,539,038	+				-1.4
2,539,038	+				-2.3
2,539,038	+				+1.3
2,539,038	+				+0.9
2,539,038	+				+1.5
2,539,051	+				-1.9
2,539,052	-				-0.7
2,539,064	-				-0.7
2,539,064	-				+3.8
2,539,085	+				+0.2
2,539,138	+		EFB2_02399	0.10	-0.8
2,539,138	+		EFB2_02399	0.10	-3.3
2,539,138	+		EFB2_02399	0.10	+0.1
2,539,138	+		EFB2_02399	0.10	+3.1
2,539,138	+		EFB2_02399	0.10	+2.1
2,539,139	-		EFB2_02399	0.10	-1.0
2,539,139	-		EFB2_02399	0.10	+4.1
2,539,139	-		EFB2_02399	0.10	-0.3
2,539,139	-		EFB2_02399	0.10	+0.9
2,539,178	+		EFB2_02399	0.16	+0.2
2,539,178	+		EFB2_02399	0.16	+0.2
2,539,179	-		EFB2_02399	0.16	-0.3
2,539,179	-		EFB2_02399	0.16	-2.0
2,539,224	-		EFB2_02399	0.22	-2.0
2,539,226	+		EFB2_02399	0.23	+0.2
2,539,226	+		EFB2_02399	0.23	-0.7
2,539,227	-		EFB2_02399	0.23	+0.2
2,539,227	-		EFB2_02399	0.23	-0.0
2,539,272	+		EFB2_02399	0.29	-3.1
2,539,273	-		EFB2_02399	0.29	+2.5
2,539,273	-		EFB2_02399	0.29	-1.0
2,539,283	+		EFB2_02399	0.31	+1.5
2,539,283	+		EFB2_02399	0.31	-2.0
2,539,283	+		EFB2_02399	0.31	-1.4
2,539,283	+		EFB2_02399	0.31	+0.4
2,539,313	+		EFB2_02399	0.35	+0.5
2,539,313	+		EFB2_02399	0.35	+0.0
2,539,341	+		EFB2_02399	0.39	+0.6
2,539,341	+		EFB2_02399	0.39	-2.2
2,539,341	+		EFB2_02399	0.39	+0.5
2,539,341	+		EFB2_02399	0.39	-0.3
2,539,342	-		EFB2_02399	0.39	-0.3
2,539,342	-		EFB2_02399	0.39	-1.2
2,539,399	+		EFB2_02399	0.48	-2.7
2,539,399	+		EFB2_02399	0.48	-0.2
2,539,399	+		EFB2_02399	0.48	-0.8
2,539,399	+		EFB2_02399	0.48	+1.4
2,539,400	-		EFB2_02399	0.48	-0.8
2,539,400	-		EFB2_02399	0.48	+0.7
2,539,528	+		EFB2_02399	0.66	-0.8
2,539,672	-		EFB2_02399	0.87	-1.0
2,539,707	+				-0.8
2,539,707	+				+0.2
2,539,707	+				-1.0
2,539,707	+				-1.4
2,539,707	+				+0.7
2,539,707	+				-2.5
2,539,707	+				+0.9
2,539,707	+				+2.2
2,539,707	+				-1.1
2,539,707	+				+0.4
2,539,707	+				+0.1
2,539,707	+				-1.8
2,539,707	+				+0.4
2,539,708	-				-0.9
2,539,708	-				-1.3
2,539,708	-				-2.0
2,539,708	-				+0.9
2,539,708	-				+1.2
2,539,717	+				+0.4
2,539,717	+				+0.9
2,539,717	+				-0.4
2,539,717	+				-1.2
2,539,717	+				-2.6
2,539,717	+				-0.5
2,539,717	+				+0.1
2,539,717	+				+0.5
2,539,717	+				+1.4
2,539,717	+				-2.1
2,539,717	+				+1.6
2,539,718	-				-1.4
2,539,718	-				+1.5
2,539,721	+				-1.7
2,539,721	+				+2.3
2,539,721	+				+2.0
2,539,721	+				-1.4
2,539,721	+				-1.4
2,539,721	+				+0.2
2,539,721	+				-0.8
2,539,722	-				+0.2
2,539,722	-				+1.1
2,539,722	-				-1.5
2,539,722	-				-0.1
2,539,722	-				+0.1
2,539,745	-				-1.8
2,539,748	+				-1.8
2,539,748	+				-0.1
2,539,748	+				-0.6
2,539,748	+				+0.5
2,539,749	-				-2.0
2,539,749	-				-0.2
2,539,749	-				+1.7
2,539,749	-				-0.3
2,539,761	+				-0.7
2,539,761	+				-1.1
2,539,762	-				+0.2
2,539,788	+				+0.8
2,539,788	+				-1.2
2,539,789	-				-1.4
2,539,803	+				+2.5
2,539,804	-				+3.5
2,539,815	+				+0.0
2,539,815	+				-0.3
2,539,815	+				+1.8
2,539,816	-				+4.5
2,539,816	-				+1.1
2,539,816	-				+1.9
2,539,816	-				-0.0
2,539,816	-				-0.5
2,539,816	-				+2.5
2,539,816	-				+5.6
2,539,816	-				-1.1
2,539,823	-				+1.6
2,539,842	+		EFB2_02400	0.10	-0.1
2,539,842	+		EFB2_02400	0.10	-2.3
2,539,842	+		EFB2_02400	0.10	-0.5
2,539,842	+		EFB2_02400	0.10	+3.6
2,539,843	-		EFB2_02400	0.10	+1.6
2,539,843	-		EFB2_02400	0.10	+0.7
2,539,843	-		EFB2_02400	0.10	+0.9
2,539,843	-		EFB2_02400	0.10	+0.2
2,539,843	-		EFB2_02400	0.10	-2.2
2,539,843	-		EFB2_02400	0.10	-0.3
2,539,843	-		EFB2_02400	0.10	+1.3
2,539,843	-		EFB2_02400	0.10	+0.0
2,539,843	-		EFB2_02400	0.10	-0.2
2,539,859	+		EFB2_02400	0.11	-2.4
2,539,859	+		EFB2_02400	0.11	+0.2
2,539,860	-		EFB2_02400	0.11	+0.5
2,539,942	-		EFB2_02400	0.18	+0.1